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Dmitry Lyumkis

the salk institute for biological studies

31H-index
140Paper Count
7.3KCitation Count
Published Papers 47
Publication Date
Temporal Evolution of Drug Resistance to HIV Integrase Inhibitors
errViruses
IF3.5
err2026-05-08
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errOAAI
errIndrani Choudhuri; Jocelyn G. Olvera; Avik Biswas; Allan Haldane; Ronald M. Levy; Dmitry Lyumkis
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Using phage display for rational engineering of a higher-affinity humanized 3’ phosphohistidine-specific antibody
err2025-11-27
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errOAAI
errGregory D. Martyn; Rajasree Kalagiri; Gianluca Veggiani; Robyn L. Stanfield; Indrani Choudhuri; Margaux Sala; Jill Meisenhelder; Chao Chen; Avik Biswas; Ronald M. Levy; Dmitry Lyumkis; Ian A. Wilson; Tony Hunter; Sachdev S. Sidhu
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The Structural Basis of RORγt Binding to Chromatin
err2025-11-01
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PREAI
errStrutzenberg, Timothy; Mann, Matthew; Li, Xiandu; Shin, Hyejeong; Kelsey, Jordan; Aiyer, Sriram; Yu, Jingting; Griffin, Patrick R.; Zheng, Ye; Lyumkis, Dmitry
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Oligomeric HIV-1 integrase structures reveal functional plasticity for intasome assembly and RNA binding
err2025-10-24
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errOAAI
errTao Jing; Zelin Shan; Tung Dinh; Avik Biswas; Sooin Jang; Juliet Greenwood; Min Li; Zeyuan Zhang; Gennavieve Gray; Hye Jeong Shin; Bo Zhou; Dario Passos; Timothy S. Strutzenberg; Sriram Aiyer; Leonardo Andrade; Yuxuan Zhang; Zhen Li; Robert Craigie; Alan N. Engelman; Mamuka Kvaratskhelia; Dmitry Lyumkis
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Phase-separated NDF−FACT condensates facilitate transcription elongation on chromatin
err2025-09-30
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errOAAI
errZiwei Li; Francesca Burgos-Bravo; Kevin Xu; Chen Li; Kelvin Y. Kwan; Alexander B. Tong; Zelin Shan; Huan Wang; Motoki Takaku; Joey Li; Zheng Shi; Dmitry Lyumkis; Carlos Bustamante; Jia Fei
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Two-metal ion mechanism of DNA cleavage by activated fi lamentous SgrAI
err2024-08-01
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errOAAI
errShan, Zelin; Rivero-Gamez, Andres; Lyumkis, Dmitry; Horton, Nancy C.
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Assembly of the bacterial ribosome with circularly permuted rRNA
err2024-07-22
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errOAAI
errDong, Xiyu; Sheng, Kai; Gebert, Luca F. R.; Aiyer, Sriram; Macrae, Ian J.; Lyumkis, Dmitry; Williamson, James R.
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Overcoming resolution attenuation during tilted cryo-EM data collection
err2024-01-09
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errOAAI
errAiyer, Sriram; Baldwin, Philip R.; Tan, Shi Min; Shan, Zelin; Oh, Juntaek; Mehrani, Atousa; Bowman, Marianne E.; Louie, Gordon; Passos, Dario Oliveira; Dordevic-Marquardt, Selena; Mietzsch, Mario; Hull, Joshua A.; Hoshika, Shuichi; Barad, Benjamin A.; Grotjahn, Danielle A.; Mckenna, Robert; Agbandje-McKenna, Mavis; Benner, Steven A.; Noel, Joseph A. P.; Wang, Dong; Tan, Yong Zi; Lyumkis, Dmitry
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A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase
err2023-12-12
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errOAAI
errOh, Juntaek; Shan, Zelin; Hoshika, Shuichi; Xu, Jun; Chong, Jenny; Benner, Steven A.; Lyumkis, Dmitry; Wang, Dong
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Structural basis of branching during RNA splicing
err2023-12-06
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errOAAI
errHaack, Daniel B.; Rudolfs, Boris; Zhang, Cheng; Lyumkis, Dmitry; Toor, Navtej
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Assembly landscape for the bacterial large ribosomal subunit
err2023-08-26
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errOAAI
errSheng, Kai; Li, Ning; Rabuck-Gibbons, Jessica N.; Dong, Xiyu; Lyumkis, Dmitry; Williamson, James R.
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Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants
err2023-07-21
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errOAAI
errLi, Min; Passos, Dario Oliveira; Shan, Zelin; Smith, Steven J.; Sun, Qinfang; Biswas, Avik; Choudhuri, Indrani; Strutzenberg, Timothy S.; Haldane, Allan; Deng, Nanjie; Li, Zhaoyang; Zhao, Xue Zhi; Briganti, Lorenzo; Kvaratskhelia, Mamuka; Burke Jr, Terrence R. R.; Levy, Ronald M.; Hughes, Stephen H.; Craigie, Robert; Lyumkis, Dmitry
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Near-physiological in vitro assembly of 50S ribosomes involves parallel pathways
err2023-03-02
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errOAAI
errDong, Xiyu; Doerfel, Lili K.; Sheng, Kai; Rabuck-Gibbons, Jessica N.; Popova, Anna M.; Lyumkis, Dmitry; Williamson, James R.
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B-to-A transition in target DNA during retroviral integration
err2022-08-10
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errOAAI
errJozwik, Ilona K.; Li, Wen; Zhang, Da-Wei; Wong, Doris; Grawenhoff, Julia; Ballandras-Colas, Allison; Aiyer, Sriram; Cherepanov, Peter; Engelman, Alan N.; Lyumkis, Dmitry
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Cryo-EM structure of the HIV-1 Pol polyprotein provides insights into virion maturation
err2022-07-08
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errOAAI
errHarrison, Jerry Joe E. K.; Passos, Dario Oliveira; Bruhn, Jessica F.; Bauman, Joseph D.; Tuberty, Lynda; DeStefano, Jeffrey J.; Ruiz, Francesc Xavier; Lyumkis, Dmitry; Arnold, Eddy
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Mechanism of Activation of SgrAI via Enzyme Filamentation and Mechanism of DNA Sequence Specificity Expansion
err2022-05-13
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PREAI
errHorton, Nancy; Ghadirian, Niloofar; Shan, Zelin; Lyumkis, Dmitry
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