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J

José C. M. Mombach

universidade federal do rio grande do sul

24H-index
98Paper Count
1.6KCitation Count
Published Papers 26
Publication Date
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MYC–SNHG7–miR-34a-5p Feedback Loop Orchestrates GSDMD-Dependent Pyroptosis in Hepatocellular Carcinoma
errInternational Journal of Molecular Sciences
IF4.9
err2026-09-23
err0
errOAAI
errHouemakou Rimaud Djidonou; Laís de Carvalho Gonçalves; Djorkaeff O. Fontinele; Daner A. Silveira; Marialva Sinigaglia; Joao Paulo M. S. Lima; José Carlos M. Mombach; Shantanu Gupta
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errSave
Modeling 3D cell sorting kinetics: Periodic vs. open boundary conditions vs. cell ratio
errPHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
IF3.1
err2026-09-01
err0
PREAI
errMombach, Jose Carlos Merino; Thomas, Gilberto L.
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errSave
Systems biology approach reveals the dynamics of cancer stem cell acquisition in ewing sarcoma: the role of let-7 and miR-145 regulatory circuits
errNetwork Modeling Analysis in Health Informatics and Bioinformatics
IF0
err2026-02-17
err0
PREAI
errSilveira, Daner A.; Gupta, Shantanu; Brunetto, Andre T.; Mombach, Jose Carlos Merino; Sinigaglia, Marialva
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errSave
DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance
errProteomes 2025, Vol. 13, Page 6
IF3.6
err2025-08-22
err0
PREAI
errShantanu Gupta; Daner A. Silveira; José Carlos M. Mombach; Ronaldo F. Hashimoto
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errSave
Targeting NSCLC drug resistance: Systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2025-05-28
err0
PREAI
errGupta, Shantanu; Silveira, Daner Acunha; Mombach, Jose Carlos; Hashimoto, Ronaldo F.
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errSave
DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance
errPROTEOMES
IF3.6
err2025-01-20
err1
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Mombach, Jose Carlos M.; Hashimoto, Ronaldo F.
errShare
errSave
Hypoxia-driven hybrid phenotypes in Ewing sarcoma: Insights from computational epithelial-mesenchymal transition modeling
errnature computational science
IF3.7
err2024-12-01
err1
PREAI
errSilveira, Daner A.; Gupta, Shantanu; Brunetto, Andre T.; Mombach, Jose Carlos Merino; Sinigaglia, Marialva
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errSave
A differentiable programming framework for spin models
errCOMPUTER PHYSICS COMMUNICATIONS
IF3.4
err2024-09-01
err0
PREAI
errFarias, Tiago S.; Schultz, Vitor V.; Mombach, Jose C. M.; Maziero, Jonas
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A dynamic Boolean network reveals that the BMI1 and MALAT1 axis is associated with drug resistance by limiting miR-145-5p in non-small cell lung cancer
errNON-CODING RNA RESEARCH
IF4.7
err2024-03-01
err9
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Piedade, Gabriel P. S.; Ostrowski, Miguel P.; Mombach, Jose Carlos M.; Hashimoto, Ronaldo F.
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errSave
The lncRNA DLX6-AS1/miR-16-5p axis regulates autophagy and apoptosis in non-small cell lung cancer: A Boolean model of cell death
errNON-CODING RNA RESEARCH
IF4.7
err2023-12-01
err6
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Mombach, Jose Carlos M.; Hashimoto, Ronaldo F.
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errSave
A logical model of Ewing sarcoma cell epithelial-to-mesenchymal transition supports the existence of hybrid cellular phenotypes
errFEBS LETTERS
IF3
err2023-08-28
err5
errOAAI
errSilveira, Daner A.; Gupta, Shantanu; Jaeger, Mariane da Cunha; de Farias, Caroline Brunetto; Mombach, Jose Carlos Merino; Sinigaglia, Marialva
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errSave
A Boolean Model of the Proliferative Role of the lncRNA XIST in Non-Small Cell Lung Cancer Cells
errBIOLOGY-BASEL
IF3.5
err2022-03-22
err6
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Hashimoto, Ronaldo E.; Mombach, Jose Carlos M.
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errSave
Towards DNA-damage induced autophagy: A Boolean model of p53-induced cell fate mechanisms
errDNA REPAIR
IF2.7
err2020-12-01
err43
PREAI
errGupta, Shantanu; Silveira, Daner A.; Mombach, Jose Carlos M.
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errSave
Systems biology approach suggests new miRNAs as phenotypic stability factors in the epithelial-mesenchymal transition
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2020-10-14
err28
errOAAI
errSilveira, Daner A.; Gupta, Shantanu; Mombach, Jose Carlos M.
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errSave
Integrative data modeling from lung and lymphatic cancer predicts functional roles for miR-34a and miR-16 in cell fate regulation
errSCIENTIFIC REPORTS
IF3.9
err2020-02-13
err16
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Barbe-Tuana, Florencia M.; Mombach, Jose Carlos M.
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errSave
ATM/miR-34a-5p axis regulates a p21-dependent senescence-apoptosis switch in non-small cell lung cancer: a Boolean model of G1/S checkpoint regulation
errFEBS LETTERS
IF3
err2019-10-10
err36
errOAAI
errGupta, Shantanu; Silveira, Daner A.; Mombach, Jose Carlos M.
errShare
errSave
Dynamics of the feedback loops required for the phenotypic stabilization in the epithelial-mesenchymal transition
errFEBS JOURNAL
IF4.2
err2019-10-01
err21
errOAAI
errSilveira, Daner A.; Mombach, Jose Carlos M.
errShare
errSave
Towards the contribution of the p38MAPK pathway to the dual role of TGFβ in cancer: A boolean model approach
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2019-01-01
err7
errOAAI
errRossato, Veronica V.; Silveira, Daner A.; Gupta, Shantanu; Mombach, Jose Carlos M.
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errSave
Network integration of multi-tumour omics data suggests novel targeting strategies
errNATURE COMMUNICATIONS
IF15.7
err2018-10-30
err29
errOAAI
errdo Valle, Italo Faria; Menichetti, Giulia; Simonetti, Giorgia; Bruno, Samantha; Zironi, Isabella; Durso, Danielle Fernandes; Mombach, Jose C. M.; Martinelli, Giovanni; Castellani, Gastone; Remondini, Daniel
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The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2016-11-01
err5
errOAAI
errFontoura, Carla A. R. S.; Castellani, Gastone; Mombach, Jose C. M.
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errSave

Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
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Giovanni Martinelli
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José Cláudio Fonseca Moreira
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G
Gastone Castellani
H-index: 49 · Papers: 407
D
Daniel Remondini
H-index: 40 · Papers: 308
G
Giorgia Simonetti
H-index: 34 · Papers: 268
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