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Ling-Dong Shi

University of California

17H-index
46Paper Count
965Citation Count
Published Papers 26
Publication Date
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Jumbo circular extrachromosomal elements of methane-oxidizing archaea with variably extensive metabolic and defense gene repertoires
errNature Communications
IF15.7
err2026-06-23
err0
errOAAI
errLing-Dong Shi; Bethany C. Kolody; Shuai Wang; Luis E. Valentin-Alvarado; Shufei Lei; Rohan Sachdeva; Jillian F. Banfield
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errSave
Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling
errNature Communications
IF15.7
err2026-01-26
err0
errOAAI
errLing-Dong Shi; Maria Florencia Ercoli; Junhyeong Kim; Artur Teixeira de Araujo Junior; Katerina Estera-Molina; Subah Soni; Tracy Satomi Weitz; Alexandra M. Shigenaga; Ilija Dukovski; Rohan Sachdeva; Halbay Turumtay; Katherine B. Louie; Benjamin P. Bowen; Suzanne M. Kosina; Henrik V. Scheller; Jennifer Pett-Ridge; Daniel Segrè; Trent R. Northen; Pamela C. Ronald; Jillian F. Banfield
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Convergent evolution of viral-like Borg archaeal extrachromosomal elements and giant eukaryotic viruses
errNature Communications
IF15.7
err2025-11-27
err0
errOAAI
errJillian F. Banfield; Luis E. Valentin-Alvarado; Ling-Dong Shi; Colin Michael Robinson; Rebecca S. Bamert; Fasseli Coulibaly; Zachary K. Barth; Frank O. Aylward; Marie C. Schoelmerich; Shufei Lei; Rohan Sachdeva; Gavin J. Knott
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errSave
Achieving efficient autotrophic nitrogen removal in anaerobic membrane bioreactor plus membrane aerated biofilm reactor by regulating nutrient ratios
errBIORESOURCE TECHNOLOGY
IF9
err2025-01-01
err0
PREAI
errHan, Yu-Lin; Shi, Ling-Dong; Zhao, He-Ping
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Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements
errGENOME RESEARCH
IF5.5
err2024-10-15
err1
errOAAI
errValentin-Alvarado, Luis E.; Shi, Ling-Dong; Appler, Kathryn E.; Crits-Christoph, Alexander; De Anda, Valerie; Adler, Benjamin A.; Cui, Michael L.; Ly, Lynn; Leao, Pedro; Roberts, Richard J.; Sachdeva, Rohan; Baker, Brett J.; Savage, David F.; Banfield, Jillian F.
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Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires
errNATURE COMMUNICATIONS
IF15.7
err2024-06-26
err0
errOAAI
errSchoelmerich, Marie C.; Ly, Lynn; West-Roberts, Jacob; Shi, Ling-Dong; Shen, Cong; Malvankar, Nikhil S.; Taib, Najwa; Gribaldo, Simonetta; Woodcroft, Ben J.; Schadt, Christopher W.; Al-Shayeb, Basem; Dai, Xiaoguang; Mozsary, Christopher; Hickey, Scott; He, Christine; Beaulaurier, John; Juul, Sissel; Sachdeva, Rohan; Banfield, Jillian F.
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Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species
errISME JOURNAL
IF10
err2023-08-12
err11
errOAAI
errPeng, Yongyi; Lu, Zijian; Pan, Donald; Shi, Ling-Dong; Zhao, Zhao; Liu, Qing; Zhang, Chuwen; Jia, Kuntong; Li, Jiwei; Hubert, Casey R. J.; Dong, Xiyang
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Unexpected genetic and microbial diversity for arsenic cycling in deep sea cold seep sediments
errNPJ BIOFILMS AND MICROBIOMES
IF9.2
err2023-03-29
err13
errOAAI
errZhang, Chuwen; Liu, Xinyue; Shi, Ling-Dong; Li, Jiwei; Xiao, Xi; Shao, Zongze; Dong, Xiyang
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errSave
pH-Dependent Hydrogenotrophic Denitratation Based on Self- Alkalization
errENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
err2022-11-21
err13
PREAI
errShi, Ling-Dong; Gao, Tian-Yu; Wei, Xiao-Wen; Shapleigh, James P.; Zhao, He-Ping
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errSave
Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments
errNATURE COMMUNICATIONS
IF15.7
err2022-08-19
err48
errOAAI
errDong, Xiyang; Zhang, Chuwen; Peng, Yongyi; Zhang, Hong-Xi; Shi, Ling-Dong; Wei, Guangshan; Hubert, Casey R. J.; Wang, Yong; Greening, Chris
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errSave
Coupled Aerobic Methane Oxidation and Arsenate Reduction Contributes to Soil-Arsenic Mobilization in Agricultural Fields
errENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
err2022-08-03
err17
PREAI
errShi, Ling-Dong; Zhou, Yu-Jie; Tang, Xian-Jin; Kappler, Andreas; Chistoserdova, Ludmila; Zhu, Li-Zhong; Zhao, He -Ping
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Highly Efficient Reductive Detoxification of Sulfamethoxazole by Palladium Nanoparticles Deposited on H2-Transfer Membranes
errACS ES&T WATER
IF4.3
err2022-05-17
err3
PREAI
errXu, Qu-Jin; Shi, Ling-Dong; Zhao, He-Ping
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errSave
A mixed blessing of viruses in wastewater treatment plants
errWATER RESEARCH
IF12.4
err2022-05-01
err37
errOAAI
errShi, Ling-Dong; Dong, Xiyang; Liu, Zongbao; Yang, Yuchun; Lin, Jih-Gaw; Li, Meng; Gu, Ji-Dong; Zhu, Li-Zhong; Zhao, He-Ping
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errSave
Biotic shortcut deselenization coupled to abiotic sulfide oxidation enabled pollutants co-removal and products recovery
errWATER RESEARCH
IF12.4
err2021-10-01
err0
PREAI
errShi, Ling-Dong; Ji, Han-Rui; Jin, Rui; Chen, Yan-Bo; Gao, Tian-Yu; Ma, Fang; Zhao, He-Ping
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errSave
The evolution of bacterial community structure and function in microalgal-bacterial consortia with inorganic nitrogen fluctuations in piggery digestate
errJOURNAL OF CLEANER PRODUCTION
IF10
err2021-09-01
err7
PREAI
errWang, Min; Shi, Ling-Dong; Wang, Yan; Hu, Sha-Qi; Tao, Xing-Ming; Tian, Guang-Ming
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errSave
Methane-dependent selenate reduction by a bacterial consortium
errISME JOURNAL
IF10
err2021-06-28
err30
errOAAI
errShi, Ling-Dong; Lv, Pan-Long; McIlroy, Simon J.; Wang, Zhen; Dong, Xiao-Li; Kouris, Angela; Lai, Chun-Yu; Tyson, Gene W.; Strous, Marc; Zhao, He-Ping
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Will a Non-antibiotic Metalloid Enhance the Spread of Antibiotic Resistance Genes: The Selenate Story
errENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
err2020-12-28
err43
PREAI
errShi, Ling-Dong; Xu, Qiu-Jin; Liu, Jie-Yi; Han, Zi-Xian; Zhu, Yong-Guan; Zhao, He-Ping
errShare
errSave
Coupled anaerobic methane oxidation and reductive arsenic mobilization in wetland soils
errNATURE GEOSCIENCE
IF16.1
err2020-11-23
err107
errOAAI
errShi, Ling-Dong; Guo, Ting; Lv, Pan-Long; Niu, Zi-Fan; Zhou, Yu-Jie; Tang, Xian-Jin; Zheng, Ping; Zhu, Li-Zhong; Zhu, Yong-Guan; Kappler, Andreas; Zhao, He-Ping
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A mixed consortium of methanotrophic archaea and bacteria boosts methane -dependent selenate reduction
errSCIENCE OF THE TOTAL ENVIRONMENT
IF8
err2020-08-01
err24
PREAI
errShi, Ling-Dong; Lv, Pan-Long; Wang, Min; Lai, Chun-Yu; Zhao, He-Ping
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errSave
Characteristics and performances of microalgal-bacterial consortia in a mixture of raw piggery digestate and anoxic aerated effluent
errBIORESOURCE TECHNOLOGY
IF9
err2020-08-01
err27
PREAI
errWang, Min; Shi, Ling-Dong; Lin, Dan-Xi; Qiu, Dong-Sheng; Chen, Jing-Pan; Tao, Xing-Ming; Tian, Guang-Ming
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
Y
Yong‐Guan Zhu
H-index: 159 · Papers: 1.6K
J
Jillian F. Banfield
H-index: 154 · Papers: 935
刘青 cover
刘青 (Qing Liu)
H-index: 106 · Papers: 3.2K
P
Pamela C. Ronald
H-index: 95 · Papers: 396
A
Andreas Kappler
H-index: 92 · Papers: 661
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