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Nick Dee

Allen Institute for Brain Science

45H-index
103Paper Count
2.9WCitation Count
Published Papers 11
Publication Date
Connecting single-cell transcriptomes to projectomes in the mouse visual cortex
errNature
IF48.5
err2026-07-01
err0
errOAAI
errStaci A. Sorensen; Nathan W. Gouwens; Yun Wang; Matt Mallory; Agata Budzillo; Rachel Dalley; Brian R. Lee; Olga Gliko; Hsien-chi Kuo; Xiuli Kuang; Rusty Mann; Leila Ahmadinia; Lauren Alfiler; Fahimeh Baftizadeh; Katherine S. Baker; Sarah Bannick; Darren Bertagnolli; Kris Bickley; Phil Bohn; Jasmine Bomben; Chris Bowman; Gabriella Boyer; Krissy Brouner; Dillan Brown; Alex Cahoon; Natalie Chen; Chao Chen; Kai Chen; Maggie Chvilicek; Forrest Collman; Tanya L. Daigle; Tim Dawes; Rebecca de Frates; Nick Dee; Maxwell DePartee; Tom Egdorf; Laila El-Hifnawi; Rachel Enstrom; Luke Esposito; Colin Farrell; Rohan Gala; Clare Gamlin; Amanda Gary; Andrew Glomb; Olena Gerasymchuk; Jeff Goldy; Hong Gu; Kristen Hadley; Mike Hawrylycz; Alex Henry; Dijon Hill; Karla E. Hirokawa; Zili Huang; Katelyn Johnson; Zoe Juneau; Sara Kebede; Lisa Kim; Lauren Kruse; Changkyu Lee; Arielle L. Leon; Phil Lesnar; Quinn Lheureux; Anan Li; Yaoyao Li; Elizabeth Liang; Katie Link; Michelle Maxwell; Medea McGraw; Delissa A. McMillen; Alice Mukora; Lindsay Ng; Thomas Ochoa; Aaron Oldre; Daniel Park; Christina Alice Pom; Zoran Popovich; Lydia Potekhina; Ram Rajanbabu; Shea Ransford; Melissa R. Reding; Augustin Ruiz; David Sandman; Martin Schroedter; Josh Sevigny; Lyudmila Shulga; La’Akea Siverts; Cliff R. Slaughterbeck; Kimberly A. Smith; Michelle Stoecklin; Josef Sulc; Susan M. Sunkin; Michael Tieu; Jonathan T. Ting; Jessica Trinh; Ramel Velasco; Sara Vargas; Dave Vumbaco; Miranda Walker; Micheal Wang; Adrian Wanner; Jack Waters; Mirah Wells; Grace Williams; Julia A. Wilson; Wei Xiong; Ed S. Lein; Jim Berg; Brian E. Kalmbach; Shenqin Yao; Hui Gong; Qingming Luo; Quanxin Wang; Lydia Ng; Uygar Sümbül; Zizhen Yao; Tim Jarsky; Bosiljka Tasic; Hongkui Zeng
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Transcriptomic and spatial organization of telencephalic GABAergic neurons
errNature
IF48.5
err2025-11-05
err0
errOAAI
errCindy T. J. van Velthoven; Yuan Gao; Michael Kunst; Changkyu Lee; Delissa McMillen; Anish Bhaswanth Chakka; Tamara Casper; Michael Clark; Rushil Chakrabarty; Scott Daniel; Tim Dolbeare; Rebecca Ferrer; Jessica Gloe; Jeff Goldy; Junitta Guzman; Carliana Halterman; Windy Ho; Mike J. Huang; Katelyn James; Rachel McCue; Beagan Nguy; Trangthanh Cardenas; Kara Ronellenfitch; Emma D. Thomas; Amy Torkelson; Chelsea M. Pagan; Lauren Kruse; Nick Dee; Lydia Ng; Jack Waters; Kimberly A. Smith; Bosiljka Tasic; Zizhen Yao; Hongkui Zeng
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Continuous cell-type diversification in mouse visual cortex development
errNature
IF48.5
err2025-11-05
err0
errOAAI
errYuan Gao; Cindy T. J. van Velthoven; Changkyu Lee; Emma D. Thomas; Rémi Mathieu; Angela P. Ayala; Stuard Barta; Darren Bertagnolli; Jazmin Campos; Trangthanh Cardenas; Daniel Carey; Tamara Casper; Anish Bhaswanth Chakka; Rushil Chakrabarty; Megan Chiang; Lindsey Ching; Michael Clark; Marie J. Desierto; Rebecca Ferrer; Jessica Gloe; Jeff Goldy; Nathan Guilford; Junitta Guzman; Carliana R. Halterman; Samantha D. Hastings; Daniel Hirschstein; Windy Ho; Katelyn James; Zoe Juneau; Naomi Martin; Rachel McCue; Emma Meyerdierks; Amanda C. Mitchell; Josh S. Nagra; Beagan Nguy; Thuc Nghi Nguyen; Paul Olsen; Alana A. Oyama; Nick Pena; Jacob Quon; Qingzhong Ren; Augustin Ruiz; Nadiya V. Shapovalova; Josef Sulc; Amy Torkelson; Alex Tran; Herman Tung; Nasmil Valera Cuevas; Justin Wang; Jeanelle Ariza; Delissa A. M. McMillen; Jack Waters; Michael Kunst; Kara Ronellenfitch; Boaz Levi; Michael J. Hawrylycz; Chelsea Pagan; Nick Dee; Kimberly A. Smith; Bosiljka Tasic; Zizhen Yao; Hongkui Zeng
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Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex
err2023-05-30
err13
errOAAI
errKim, Mean-Hwan; Radaelli, Cristina; Thomsen, Elliot R.; Monet, Deja; Chartrand, Thomas; Jorstad, Nikolas L.; Mahoney, Joseph T.; Taormina, Michael J.; Long, Brian; Baker, Katherine; Bakken, Trygve E.; Campagnola, Luke; Casper, Tamara; Clark, Michael; Dee, Nick; D'Orazi, Florence; Gamlin, Clare; Kalmbach, Brian E.; Kebede, Sara; Lee, Brian R.; Ng, Lindsay; Trinh, Jessica; Cobbs, Charles; Gwinn, Ryder P.; Keene, C. Dirk; Ko, Andrew L.; Ojemann, Jeffrey G.; Silbergeld, Daniel L.; Sorensen, Staci A.; Berg, Jim; Smith, Kimberly A.; Nicovich, Philip R.; Jarsky, Tim; Zeng, Hongkui; Ting, Jonathan T.; Levi, Boaz P.; Lein, Ed
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Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
err2021-09-02
err40
errOAAI
errBakken, Trygve E.; van Velthoven, Cindy T. J.; Menon, Vilas; Hodge, Rebecca D.; Yao, Zizhen; Thuc Nghi Nguyen; Graybuck, Lucas T.; Horwitz, Gregory D.; Bertagnolli, Darren; Goldy, Jeff; Yanny, Anna Marie; Garren, Emma; Parry, Sheana; Casper, Tamara; Shehata, Soraya, I; Barkan, Eliza R.; Szafer, Aaron; Levi, Boaz P.; Dee, Nick; Smith, Kimberly A.; Sunkin, Susan M.; Bernard, Amy; Phillips, John; Hawrylycz, Michael J.; Koch, Christof; Murphy, Gabe J.; Lein, Ed; Zeng, Hongkui; Tasic, Bosiljka
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Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons
errNEURON
IF15
err2021-09-01
err50
errOAAI
errKalmbach, Brian E.; Hodge, Rebecca D.; Jorstad, Nikolas L.; Owen, Scott; de Frates, Rebecca; Yanny, Anna Marie; Dalley, Rachel; Mallory, Matt; Graybuck, Lucas T.; Radaelli, Cristina; Keene, C. Dirk; Gwinn, Ryder P.; Silbergeld, Daniel L.; Cobbs, Charles; Ojemann, Jeffrey G.; Ko, Andrew L.; Patel, Anoop P.; Ellenbogen, Richard G.; Bakken, Trygve E.; Daigle, Tanya L.; Dee, Nick; Lee, Brian R.; McGraw, Medea; Nicovich, Philip R.; Smith, Kimberly; Sorensen, Staci A.; Tasic, Bosiljka; Zeng, Hongkui; Koch, Christof; Lein, Ed S.; Ting, Jonathan T.
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Enhancer viruses for combinatorial cell-subclass-specific labeling
errNEURON
IF15
err2021-05-01
err82
errOAAI
errGraybuck, Lucas T.; Daigle, Tanya L.; Sedeno-Cortes, Adriana E.; Walker, Miranda; Kalmbach, Brian; Lenz, Garreck H.; Morin, Elyse; Thuc Nghi Nguyen; Garren, Emma; Bendrick, Jacqueline L.; Kim, Tae Kyung; Zhou, Thomas; Mortrud, Marty; Yao, Shenqin; Siverts, La' Akea; Larsen, Rachael; Gore, Bryan B.; Szelenyi, Eric R.; Trader, Cameron; Balaram, Pooja; van Velthoven, Cindy T. J.; Chiang, Megan; Mich, John K.; Dee, Nick; Goldy, Jeff; Cetin, Ali H.; Smith, Kimberly; Way, Sharon W.; Esposito, Luke; Yao, Zizhen; Gradinaru, Viviana; Sunkin, Susan M.; Lein, Ed; Levi, Boaz P.; Ting, Jonathan T.; Zeng, Hongkui; Tasic, Bosiljka
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Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex
err2021-03-01
err90
errOAAI
errMich, John K.; Graybuck, Lucas T.; Hess, Erik E.; Mahoney, Joseph T.; Kojima, Yoshiko; Ding, Yi; Somasundaram, Saroja; Miller, Jeremy A.; Kalmbach, Brian E.; Radaelli, Cristina; Gore, Bryan B.; Weed, Natalie; Omstead, Victoria; Bishaw, Yemeserach; Shapovalova, Nadiya, V; Martinez, Refugio A.; Fong, Olivia; Yao, Shenqin; Mortrud, Marty; Chong, Peter; Loftus, Luke; Bertagnolli, Darren; Goldy, Jeff; Casper, Tamara; Dee, Nick; Opitz-Araya, Ximena; Cetin, Ali; Smith, Kimberly A.; Gwinn, Ryder P.; Cobbs, Charles; Ko, Andrew L.; Ojemann, Jeffrey G.; Keene, C. Dirk; Silbergeld, Daniel L.; Sunkin, Susan M.; Gradinaru, Viviana; Horwitz, Gregory D.; Zeng, Hongkui; Tasic, Bosiljka; Lein, Ed S.; Ting, Jonathan T.; Levi, Boaz P.
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Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network
errNEURON
IF15
err2021-02-01
err72
errOAAI
errWhitesell, Jennifer D.; Liska, Adam; Coletta, Ludovico; Hirokawa, Karla E.; Bohn, Phillip; Williford, Ali; Groblewski, Peter A.; Graddis, Nile; Kuan, Leonard; Knox, Joseph E.; Ho, Anh; Wakeman, Wayne; Nicovich, Philip R.; Nguyen, Thuc Nghi; van Velthoven, Cindy T. J.; Garren, Emma; Fong, Olivia; Naeemi, Maitham; Henry, Alex M.; Dee, Nick; Smith, Kimberly A.; Levi, Boaz; Feng, David; Ng, Lydia; Tasic, Bosiljka; Zeng, Hongkui; Mihalas, Stefan; Gozzi, Alessandro; Harris, Julie A.
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Neuropathological and transcriptomic characteristics of the aged brain
err2017-11-09
err105
errOAAI
errMiller, Jeremy A.; Guillozet-Bongaarts, Angela; Gibbons, Laura E.; Postupna, Nadia; Renz, Anne; Beller, Allison E.; Sunkin, Susan M.; Ng, Lydia; Rose, Shannon E.; Smith, Kimberly A.; Szafer, Aaron; Barber, Chris; Bertagnolli, Darren; Bickley, Kristopher; Brouner, Krissy; Caldejon, Shiella; Chapin, Mike; Chua, Mindy L.; Coleman, Natalie M.; Cudaback, Eiron; Cuhaciyan, Christine; Dalley, Rachel A.; Dee, Nick; Desta, Tsega; Dolbeare, Tim A.; Dotson, Nadezhda I.; Fisher, Michael; Gaudreault, Nathalie; Gee, Garrett; Gilbert, Terri L.; Goldy, Jeff; Griffin, Fiona; Habel, Caroline; Haradon, Zeb; Hejazinia, Nika; Hellstern, Leanne L.; Horvath, Steve; Howard, Kim; Howard, Robert; Johal, Justin; Jorstad, Nikolas L.; Josephsen, Samuel R.; Kuan, Chihchau L.; Lai, Florence; Lee, Eric; Lee, Felix; Lemon, Tracy; Li, Xianwu; Marshall, Desiree A.; Melchor, Jose; Mukherjee, Shubhabrata; Nyhus, Julie; Pendergraft, Julie; Potekhina, Lydia; Rha, Elizabeth Y.; Rice, Samantha; Rosen, David; Sapru, Abharika; Schantz, Aimee; Shen, Elaine; Sherfield, Emily; Shi, Shu; Sodt, Andy J.; Thatra, Nivretta; Tieu, Michael; Wilson, Angela M.; Montine, Thomas J.; Larson, Eric B.; Bernard, Amy; Crane, Paul K.; Ellenbogen, Richard G.; Keene, C. Dirk; Lein, Ed
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A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain
errNEURON
IF15
err2014-07-01
err245
errOAAI
errThompson, Carol L.; Ng, Lydia; Menon, Vilas; Martinez, Salvador; Lee, Chang-Kyu; Glattfelder, Katie; Sunkin, Susan M.; Henry, Alex; Lau, Christopher; Dang, Chinh; Garcia-Lopez, Raquel; Martinez-Ferre, Almudena; Pombero, Ana; Rubenstein, John L. R.; Wakeman, Wayne B.; Hohmann, John; Dee, Nick; Sodt, Andrew J.; Young, Rob; Smith, Kimberly; Thuc-Nghi Nguyen; Kidney, Jolene; Kuan, Leonard; Jeromin, Andreas; Kaykas, Ajamete; Miller, Jeremy; Page, Damon; Orta, Geri; Bernard, Amy; Riley, Zackery; Smith, Simon; Wohnoutka, Paul; Hawrylycz, Michael J.; Puelles, Luis; Jones, Allan R.
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