logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
T

Timothy S. Carpenter

lawrence livermore national laboratory

24H-index
95Paper Count
2.3KCitation Count
Published Papers 50
Publication Date
logo
Free Energy and Flexibility Analysis of Autoinhibited Human BRAF
errJournal of Chemical Information and Modeling
IF5.3
err2026-04-21
err0
errOAAI
errJeremy O. B. Tempkin; Fikret Aydin; Sebnem Essiz; Yue Yang; Timothy S. Carpenter; David E. Durrant; Deborah K. Morrison; Helgi I. Ingólfsson; Frederick H. Streitz; Dwight V. Nissely; Felice C. Lightstone; Xiaohua Zhang
errShare
errSave
KRAS4a and KRAS4b show distinct lipid-dependent regulation of RAS-RAF membrane dynamics
errJournal of Biological Chemistry
IF3.9
err2026-02-04
err0
errOAAI
errKonstantia Georgouli; Jeremy O.B. Tempkin; Liam G. Stanton; Tomas Oppelstrup; Rebika Shrestha; Timothy S. Carpenter; Fikret Aydin; Xiaohua Zhang; Harsh Bhatia; Yue Yang; Que N. Van; Pedro Andrade Bonilla; Gulcin Gulten; Debanjan Goswami; Francesco Di Natale; Joseph R. Chavez; Joseph Y. Moon; Gautham Dharuman; Nicolas W. Hengartner; Dhirendra K. Simanshu
errShare
errSave
Integrating Ultra-Coarse-Grained Protein Models into Accessible Workflows for Multiscale Molecular Dynamics
errACS Omega
IF4.3
err2025-10-22
err0
errOAAI
errBryce Tu Chi; Stephanie Fulcar; Jonathan Ipe; Olivia Schleifer; Rohan Subramanian; Claire Vlases; Naim Matasci; Konstantia Georgouli; Loïc Pottier; Tim Hsu; Timothy S. Carpenter; Dwight V. Nissley; Felice C. Lightstone; Frederick H. Streitz; Helgi I. Ingólfsson; Fikret Aydin
errShare
errSave
Dynamics and lipid membrane coupling of the RAS-RAF complex revealed via multiscale simulations
errBiophysical Journal
IF3.1
err2025-08-22
err0
errOAAI
errTimothy S. Carpenter; Fikret Aydin; Chris Neale; Que N. Van; Xiaohua Zhang; Harsh Bhatia; Jason W. Sidabras; Peter H. Frank; Konstantia Georgouli; Jeremy O.B. Tempkin; Violeta Burns Casamayor; Gulcin Gulten; Rebika Shrestha; Debanjan Goswami; Francesco Di Natale; Joseph R. Chavez; Adam Moody; Joseph Y. Moon; Tomas Oppelstrup; James N. Glosli; Gautham Dharuman; Sergio Wong; Shusen Liu; Nicolas W. Hengartner; Cesar A. López; Kien Nguyen; Christopher B. Stanley; Liam G. Stanton; Lara Patel; Tyler Reddy; Thomas J. Turbyville; Brian Van Essen; Peer-Timo Bremer; Felice C. Lightstone; Andrew G. Stephen; Sandrasegaram Gnanakaran; Frank McCormick; Dwight V. Nissley; Frederick H. Streitz; Helgi I. Ingólfsson
errShare
errSave
Enhanced Exploration of Protein Conformational Space through Integration of Ultra-Coarse-Grained Models to Multiscale Workflows
errJOURNAL OF PHYSICAL CHEMISTRY B
IF2.9
err2025-05-08
err0
errOAAI
errAydin, Fikret; Georgouli, Konstantia; Pottier, Loic; Oppelstrup, Tomas; Carpenter, Timothy S.; Tempkin, Jeremy O. B.; Bremer, Peer-Timo; Nissley, Dwight V.; Streitz, Frederick H.; Lightstone, Felice C.; Ingolfsson, Helgi I.
errShare
errSave
Highly tail-asymmetric lipids interdigitate and cause bidirectional ordering
errJOURNAL OF LIPID RESEARCH
IF4.1
err2025-05-01
err0
errOAAI
errOzturk, Tugba N.; Ferron, Thomas J.; He, Wei; Schwarz, Benjamin; Weiss, Thomas M.; Fischer, Nicholas O.; Rasley, Amy; Carpenter, Timothy S.; Bosio, Catharine M.; Ingolfsson, Helgi I.
errShare
errSave
Anisotropic interactions for continuum modeling of protein-membrane systems
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2024-12-31
err0
errOAAI
errOppelstrup, T.; Stanton, L. G.; Tempkin, J. O. B.; Ozturk, T. N.; Ingolfsson, H. I.; Carpenter, T. S.
errShare
errSave
Generating Protein Structures for Pathway Discovery Using Deep Learning
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-10-10
err0
errOAAI
errGeorgouli, Konstantia; Stephany, Robert R.; Tempkin, Jeremy O. B.; Santiago, Claudio; Aydin, Fikret; Heimann, Mark A.; Pottier, Loic; Zhang, Xiaohua; Carpenter, Timothy S.; Hsu, Tim; Nissley, Dwight V.; Streitz, Frederick H.; Lightstone, Felice C.; Ingolfsson, Helgi I.; Bremer, Peer-Timo
errShare
errSave
Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane (vol 7, 242 , 2024)
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-04-11
err0
errOAAI
errShrestha, Rebika; Carpenter, Timothy S.; Van, Que N.; Agamasu, Constance; Tonelli, Marco; Aydin, Fikret; Chen, De; Gulten, Gulcin; Glosli, James N.; Lopez, Cesar A.; Oppelstrup, Tomas; Neale, Chris; Gnanakaran, Sandrasegaram; Gillette, William K.; Ingolfsson, Helgi I.; Lightstone, Felice C.; Stephen, Andrew G.; Streitz, Frederick H.; Nissley, Dwight V.; Turbyville, Thomas J.
errShare
errSave
Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-02-28
err8
errOAAI
errShrestha, Rebika; Carpenter, Timothy S.; Van, Que N.; Agamasu, Constance; Tonelli, Marco; Aydin, Fikret; Chen, De; Gulten, Gulcin; Glosli, James N.; Lopez, Cesar A.; Oppelstrup, Tomas; Neale, Chris; Gnanakaran, Sandrasegaram; Gillette, William K.; Ingolfsson, Helgi I.; Lightstone, Felice C.; Stephen, Andrew G.; Streitz, Frederick H.; Nissley, Dwight V.; Turbyville, Thomas J.
errShare
errSave
Advances in Computational Approaches for Estimating Passive Permeability in Drug Discovery
errMEMBRANES
IF3.6
err2023-10-25
err2
errOAAI
errBernardi, Austen; Bennett, W. F. Drew; He, Stewart; Jones, Derek; Kirshner, Dan; Bennion, Brian J.; Carpenter, Timothy S.
errShare
errSave
Martini 3 Coarse-Grained Force Field for Cholesterol
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-10-05
err26
errOAAI
errBorges-Araujo, Luis; Borges-Araujo, Ana C.; Ozturk, Tugba Nur; Ramirez-Echemendia, Daniel P.; Fabian, Balazs; Carpenter, Timothy S.; Thallmair, Sebastian; Barnoud, Jonathan; Ingolfsson, Helgi I.; Hummer, Gerhard; Tieleman, D. Peter; Marrink, Siewert J.; Souza, Paulo C. T.; Melo, Manuel N.
errShare
errSave
The confluence of machine learning and multiscale simulations
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2023-06-01
err8
errOAAI
errBhatia, Harsh; Aydin, Fikret; Carpenter, Timothy S.; Lightstone, Felice C.; Bremer, Peer-Timo; Ingolfsson, Helgi I.; V. Nissley, Dwight; Streitz, Frederick H.
errShare
errSave
Dynamics and lipid interactions of the RAS-RBD-CRD protein complex
errMOLECULAR CANCER RESEARCH
IF4.7
err2023-05-01
err0
PREAI
errLightstone, Felice C.; Carpenter, Timothy S.
errShare
errSave
Machine Learning-Driven Multiscale Modeling: Bridging the Scales with a Next-Generation Simulation Infrastructure
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-04-19
err18
errOAAI
errIngolfsson, Helgi I.; Bhatia, Harsh; Aydin, Fikret; Oppelstrup, Tomas; Lopez, Cesar A.; Stanton, Liam G.; Carpenter, Timothy S.; Wong, Sergio; Di Natale, Francesco; Zhang, Xiaohua; Moon, Joseph Y.; Stanley, Christopher B.; Chavez, Joseph R.; Nguyen, Kien; Dharuman, Gautham; Burns, Violetta; Shrestha, Rebika; Goswami, Debanjan; Gulten, Gulcin; Van, Que N.; Ramanathan, Arvind; Van Essen, Brian; Hengartner, Nicolas W.; Stephen, Andrew G.; Turbyville, Thomas; Bremer, Peer-Timo; Gnanakaran, S.; Glosli, James N.; Lightstone, Felice C.; Nissley, Dwight V.; Streitz, Frederick H.
errShare
errSave
Dynamic density functional theory of multicomponent cellular membranes
errPHYSICAL REVIEW RESEARCH
IF4.2
err2023-02-06
err5
errOAAI
errStanton, L. G.; Oppelstrup, T.; Carpenter, T. S.; Ingolfsson, H. I.; Surh, M. P.; Lightstone, F. C.; Glosli, J. N.
errShare
errSave
Exploring CRD mobility during RAS/RAF engagement at the membrane
errBIOPHYSICAL JOURNAL
IF3.1
err2022-10-01
err16
errOAAI
errNguyen, Kien; Lopez, Cesar A.; Neale, Chris; Van, Que N.; Carpenter, Timothy S.; Di Natale, Francesco; Travers, Timothy; Tran, Timothy H.; Chan, Albert H.; Bhatia, Harsh; Frank, Peter H.; Tonelli, Marco; Zhang, Xiaohua; Gulten, Gulcin; Reddy, Tyler; Burns, Violetta; Oppelstrup, Tomas; Hengartner, Nick; Simanshu, Dhirendra K.; Bremer, Peer-Timo; Chen, De; Glosli, James N.; Shrestha, Rebika; Turbyville, Thomas; Streitz, Frederick H.; Nissley, Dwight V.; Ingolfsson, Helgi I.; Stephen, Andrew G.; Lightstone, Felice C.; Gnanakaran, Sandrasegaram
errShare
errSave
Asynchronous Reciprocal Coupling of Martini 2.2 Coarse-Grained and CHARMM36 All-Atom Simulations in an Automated Multiscale Framework
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2022-07-22
err8
errOAAI
errLopez, Cesar A.; Zhang, Xiaohua; Aydin, Fikret; Shrestha, Rebika; Van, Que N.; Stanley, Christopher B.; Carpenter, Timothy S.; Nguyen, Kien; Patel, Lara A.; Chen, De; Burns, Violetta; Hengartner, Nicolas W.; Reddy, Tyler J. E.; Bhatia, Harsh; Di Natale, Francesco; Tran, Timothy H.; Chan, Albert H.; Simanshu, Dhirendra K.; V. Nissley, Dwight; Streitz, Frederick H.; Stephen, Andrew G.; Turbyville, Thomas J.; Lightstone, Felice C.; Gnanakaran, Sandrasegaram; Ingolfsson, Helgi I.; Neale, Chris
errShare
errSave
Biophysical Characterization of Membrane Proteins Embedded in Nanodiscs Using Fluorescence Correlation Spectroscopy
errMEMBRANES
IF3.6
err2022-03-31
err3
errOAAI
errLaurence, Matthew J.; Carpenter, Timothy S.; Laurence, Ted A.; Coleman, Matthew A.; Shelby, Megan; Liu, Chao
errShare
errSave
Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-01-04
err52
errOAAI
errIngolfsson, Helgi I.; Neale, Chris; Carpenter, Timothy S.; Shrestha, Rebika; Lopez, Cesar A.; Tran, Timothy H.; Oppelstrup, Tomas; Bhatia, Harsh; Stanton, Liam G.; Zhang, Xiaohua; Sundram, Shiv; Di Natale, Francesco; Agarwal, Animesh; Dharuman, Gautham; Schumacher, Sara I. L. Kokkila; Turbyville, Thomas; Gulten, Gulcin; Van, Que N.; Goswami, Debanjan; Jean-Francois, Frantz; Agamasu, Constance; Chen, De; Hettige, Jeevapani J.; Travers, Timothy; Sarkar, Sumantra; Surh, Michael P.; Yang, Yue; Moody, Adam; Liu, Shusen; Van Essen, Brian C.; Voter, Arthur F.; Ramanathan, Arvind; Hengartner, Nicolas W.; Simanshu, Dhirendra K.; Stephen, Andrew G.; Bremer, Peer-Timo; Gnanakaran, S.; Glosli, James N.; Lightstone, Felice C.; McCormick, Frank; Nissley, Dwight, V; Streitz, Frederick H.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
F
Frank McCormick
H-index: 130 · Papers: 786
B
Bruce D. Hammock
H-index: 124 · Papers: 1.9K
‪
‪Siewert J. Marrink
H-index: 111 · Papers: 737
G
Gerhard Hummer
H-index: 110 · Papers: 730
M
Mark S.P. Sansom
H-index: 105 · Papers: 962
View more