Not logged inEpihiper-A high performance computational modeling framework to support epidemic science
Chen, Jiangzhuo; Hoops, Stefan; Mortveit, Henning S.; Lewis, Bryan L.; Machi, Dustin; Bhattacharya, Parantapa; Venkatramanan, Srinivasan; Wilson, Mandy L.; Barrett, Chris L.; Marathe, Madhav, V .png)
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SaveWastewater-based epidemiology for COVID-19 surveillance and beyond: A surveyChen, Chen; Wang, Yunfan; Kaur, Gursharn; Adiga, Aniruddha; Espinoza, Baltazar; Venkatramanan, Srinivasan; Warren, Andrew; Lewis, Bryan; Crow, Justin; Singh, Rekha; Lorentz, Alexandra; Toney, Denise; Marathe, Madhav Share Save Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spreadBhattacharya, Parantapa; Machi, Dustin; Chen, Jiangzhuo; Hoops, Stefan; Lewis, Bryan; Mortveit, Henning; Venkatramanan, Srinivasan; Wilson, Mandy L.; Marathe, Achla; Porebski, Przemyslaw; Klahn, Brian; Outten, Joseph; Vullikanti, Anil; Xie, Dawen; Adiga, Abhijin; Brown, Shawn; Barrett, Christopher; Marathe, Madhav Share Save Share Save Title evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizationsMathis, Sarabeth M.; Webber, Alexander E.; Leon, Tomas M.; Murray, Erin L.; Sun, Monica; White, Lauren A.; Brooks, Logan C.; Green, Alden; Hu, Addison J.; Rosenfeld, Roni; Shemetov, Dmitry; Tibshirani, Ryan J.; McDonald, Daniel J.; Kandula, Sasikiran; Pei, Sen; Yaari, Rami; Yamana, Teresa K.; Shaman, Jeffrey; Agarwal, Pulak; Balusu, Srikar; Gururajan, Gautham; Kamarthi, Harshavardhan; Prakash, B. Aditya; Raman, Rishi; Zhao, Zhiyuan; Rodriguez, Alexander; Meiyappan, Akilan; Omar, Shalina; Baccam, Prasith; Gurung, Heidi L.; Suchoski, Brad T.; Stage, Steve A.; Ajelli, Marco; Kummer, Allisandra G.; Litvinova, Maria; Ventura, Paulo C.; Wadsworth, Spencer; Niemi, Jarad; Carcelen, Erica; Hill, Alison L.; Loo, Sara L.; McKee, Clifton D.; Sato, Koji; Smith, Claire; Truelove, Shaun; Jung, Sung-mok; Lemaitre, Joseph C.; Lessler, Justin; McAndrew, Thomas; Ye, Wenxuan; Bosse, Nikos; Hlavacek, William S.; Lin, Yen Ting; Mallela, Abhishek; Gibson, Graham C.; Chen, Ye; Lamm, Shelby M.; Lee, Jaechoul; Posner, Richard G.; Perofsky, Amanda C.; Viboud, Cecile; Clemente, Leonardo; Lu, Fred; Meyer, Austin G.; Santillana, Mauricio; Chinazzi, Matteo; Davis, Jessica T.; Mu, Kunpeng; Pastore y Piontti, Ana; Vespignani, Alessandro; Xiong, Xinyue; Ben-Nun, Michal; Riley, Pete; Turtle, James; Hulme-Lowe, Chis; Jessa, Shakeel; Nagraj, V. P.; Turner, Stephen D.; Williams, Desiree; Basu, Avranil; Drake, John M.; Fox, Spencer J.; Suez, Ehsan; Cojocaru, Monica G.; Thommes, Edward W.; Cramer, Estee Y.; Gerding, Aaron; Stark, Ariane; Ray, Evan L.; Reich, Nicholas G.; Shandross, Li; Wattanachit, Nutcha; Wang, Yijin; Zorn, Martha W.; Al Aawar, Majd; Srivastava, Ajitesh; Meyers, Lauren A.; Adiga, Aniruddha; Hurt, Benjamin; Kaur, Gursharn; Lewis, Bryan L.; Marathe, Madhav; Venkatramanan, Srinivasan; Butler, Patrick; Farabow, Andrew; Ramakrishnan, Naren; Muralidhar, Nikhil; Reed, Carrie; Biggerstaff, Matthew; Borchering, Rebecca K. Share Save Scenario design for infectious disease projections: Integrating concepts from decision analysis and experimental designRunge, Michael C.; Shea, Katriona; Howerton, Emily; Yan, Katie; Hochheiser, Harry; Rosenstrom, Erik; Probert, William J. M.; Borchering, Rebecca; Marathe, Madhav V.; Lewis, Bryan; Venkatramanan, Srinivasan; Truelove, Shaun; Lessler, Justin; Viboud, Cecile Share Save Data-driven mechanistic framework with stratified immunity and effective transmissibility for COVID-19 scenario projectionsPorebski, Przemyslaw; Venkatramanan, Srinivasan; Adiga, Aniruddha; Klahn, Brian; Hurt, Benjamin; Wilson, Mandy L.; Chen, Jiangzhuo; Vullikanti, Anil; Marathe, Madhav; Lewis, Bryan Share Save An agent-based framework to study forced migration: A case study of UkraineMehrab, Zakaria; Stundal, Logan; Venkatramanan, Srinivasan; Swarup, Samarth; Lewis, Bryan; Mortveit, Henning S.; Barrett, Christopher L.; Pandey, Abhishek; Wells, Chad R.; Galvani, Alison P.; Singer, Burton H.; Leblang, David; Colwell, Rita R.; Marathe, Madhav, V Share Save Coupled models of genomic surveillance and evolving pandemics with applications for timely public health interventionsEspinoza, Baltazar; Adiga, Aniruddha; Venkatramanan, Srinivasan; Warren, Andrew Scott; Chen, Jiangzhuo; Lewis, Bryan Leroy; Vullikanti, Anil; Swarup, Samarth; Moon, Sifat; Barrett, Christopher Louis; Athreya, Siva; Sundaresan, Rajesh; Chandru, Vijay; Laxminarayan, Ramanan; Schaffer, Benjamin; Poor, H. Vincent; Levin, Simon A.; Marathe, Madhav, V Share Save Multimodeling approach to evaluating the efficacy of layering pharmaceutical and nonpharmaceutical interventions for influenza pandemicsV. Prasad, Pragati; Steele, Molly K.; Reed, Carrie; Meyers, Lauren Ancel; Du, Zhanwei; Pasco, Remy; Alfaro-Murillo, Jorge A.; Lewis, Bryan; Venkatramanan, Srinivasan; Schlitt, James; Chen, Jiangzhuo; Orr, Mark; Wilson, Mandy L.; Eubank, Stephen; Wang, Lijing; Chinazzi, Matteo; Piontti, Ana Pastore Y.; Davis, Jessica T.; Halloran, M. Elizabeth; Longini, Ira; Vespignani, Alessandro; Pei, Sen; Galanti, Marta; Kandula, Sasikiran; Shaman, Jeffrey; Haw, David J.; Arinaminpathy, Nimalan; Biggerstaff, Matthew Share Save Predictive performance of multi-model ensemble forecasts of COVID-19 across European nationsSherratt, Katharine; Gruson, Hugo; Grah, Rok; Johnson, Helen; Niehus, Rene; Prasse, Bastian; Sandmann, Frank; Deuschel, Jannik; Wolffram, Daniel; Abbott, Sam; Ullrich, Alexander; Gibson, Graham; Ray, Evan L.; Reich, Nicholas G.; Sheldon, Daniel; Wang, Yijin; Wattanachit, Nutcha; Wang, Lijing; Trnka, Jan; Obozinski, Guillaume; Sun, Tao; Thanou, Dorina; Pottier, Loic; Krymova, Ekaterina; Meinke, Jan H.; Barbarossa, Maria Vittoria; Leithauser, Neele; Mohring, Jan; Schneider, Johanna; Wlazlo, Jaroslaw; Fuhrmann, Jan; Lange, Berit; Rodiah, Isti; Baccam, Prasith; Gurung, Heidi; Stage, Steven; Suchoski, Bradley; Budzinski, Jozef; Walraven, Robert; Villanueva, Inmaculada; Tucek, Vit; Smid, Martin; Zajicek, Milan; Perez Alvarez, Cesar; Reina, Borja; Bosse, Nikos I.; Meakin, Sophie R.; Castro, Lauren; Fairchild, Geoffrey; Michaud, Isaac; Osthus, Dave; Alaimo Di Loro, Pierfrancesco; Maruotti, Antonello; Eclerova, Veronika; Kraus, Andrea; Kraus, David; Pribylova, Lenka; Dimitris, Bertsimas; Li, Michael Lingzhi; Saksham, Soni; Dehning, Jonas; Mohr, Sebastian; Priesemann, Viola; Redlarski, Grzegorz; Bejar, Benjamin; Ardenghi, Giovanni; Parolini, Nicola; Ziarelli, Giovanni; Bock, Wolfgang; Heyder, Stefan; Hotz, Thomas; Singh, David E.; Guzman-Merino, Miguel; Aznarte, Jose L.; Morina, David; Alonso, Sergio; Alvarez, Enric; Lopez, Daniel; Prats, Clara; Burgard, Jan Pablo; Rodloff, Arne; Zimmermann, Tom; Kuhlmann, Alexander; Zibert, Janez; Pennoni, Fulvia; Divino, Fabio; Catala, Marti; Lovison, Gianfranco; Giudici, Paolo; Tarantino, Barbara; Bartolucci, Francesco; Jona Lasinio, Giovanna; Mingione, Marco; Farcomeni, Alessio; Srivastava, Ajitesh; Montero-Manso, Pablo; Adiga, Aniruddha; Hurt, Benjamin; Lewis, Bryan; Marathe, Madhav; Porebski, Przemyslaw; Venkatramanan, Srinivasan; Bartczuk, Rafal P.; Dreger, Filip; Gambin, Anna; Gogolewski, Krzysztof; Gruziel-Slomka, Magdalena; Krupa, Bartosz; Moszynski, Antoni; Niedzielewski, Karol; Nowosielski, Jedrzej; Radwan, Maciej; Rakowski, Franciszek; Semeniuk, Marcin; Szczurek, Ewa; Zielinski, Jakub; Kisielewski, Jan; Pabjan, Barbara; Holger, Kirsten; Kheifetz, Yuri; Scholz, Markus; Przemyslaw, Biecek; Bodych, Marcin; Filinski, Maciej; Idzikowski, Radoslaw; Krueger, Tyll; Ozanski, Tomasz; Bracher, Johannes; Funk, Sebastian Share Save Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: A multi-model studyBorchering, Rebecca K.; Mullany, Luke C.; Howerton, Emily; Chinazzi, Matteo; Smith, Claire P.; Qin, Michelle; Reich, Nicholas G.; Contamin, Lucie; Levander, John; Kerr, Jessica; Espino, J.; Hochheiser, Harry; Lovett, Kaitlin; Kinsey, Matt; Tallaksen, Kate; Wilson, Shelby; Shin, Lauren; Lemaitre, Joseph C.; Hulse, Juan Dent; Kaminsky, Joshua; Lee, Elizabeth C.; Hill, Alison L.; Davis, Jessica T.; Mu, Kunpeng; Xiong, Xinyue; Piontti, Ana Pastore Y.; Vespignani, Alessandro; Srivastava, Ajitesh; Porebski, Przemyslaw; Venkatramanan, Srini; Adiga, Aniruddha; Lewis, Bryan; Klahn, Brian; Outten, Joseph; Hurt, Benjamin; Chen, Jiangzhuo; Mortveit, Henning; Wilson, Amanda; Marathe, Madhav; Hoops, Stefan; Bhattacharya, Parantapa; Machi, Dustin; Chen, Shi; Paul, Rajib; Janies, Daniel; Thill, Jean-Claude; Galanti, Marta; Yamana, Teresa; Pei, Sen; Shaman, Jeffrey; Espana, Guido; Cavany, Sean; Moore, Sean; Perkins, Alex; Healy, Jessica M.; Slayton, Rachel B.; Johansson, Michael A.; Biggerstaff, Matthew; Shea, Katriona; Truelove, Shaun A.; Runge, Michael C.; Viboud, Cecile; Lessler, Justin Share Save Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision supportBhattacharya, Parantapa; Chen, Jiangzhuo; Hoops, Stefan; Machi, Dustin; Lewis, Bryan; Venkatramanan, Srinivasan; Wilson, Mandy L.; Klahn, Brian; Adiga, Aniruddha; Hurt, Benjamin; Outten, Joseph; Adiga, Abhijin; Warren, Andrew; Baek, Young Yun; Porebski, Przemyslaw; Marathe, Achla; Xie, Dawen; Swarup, Samarth; Vullikanti, Anil; Mortveit, Henning; Eubank, Stephen; Barrett, Christopher L.; Marathe, Madhav Share Save Share Save Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccinationTruelove, Shaun; Smith, Claire P.; Qin, Michelle; Mullany, Luke C.; Borchering, Rebecca K.; Lessler, Justin; Shea, Katriona; Howerton, Emily; Contamin, Lucie; Levander, John; Kerr, Jessica; Hochheiser, Harry; Kinsey, Matt; Tallaksen, Kate; Wilson, Shelby; Shin, Lauren; Rainwater-Lovett, Kaitlin; Lemairtre, Joseph C.; Dent, Juan; Kaminsky, Joshua; Lee, Elizabeth C.; Perez-Saez, Javier; Hill, Alison; Karlen, Dean; Chinazzi, Matteo; Davis, Jessica T.; Mu, Kunpeng; Xiong, Xinyue; Piontti, Ana Pastore Y.; Vespignani, Alessandro; Srivastava, Ajitesh; Porebski, Przemyslaw; Venkatramanan, Srinivasan; Adiga, Aniruddha; Lewis, Bryan; Klahn, Brian; Outten, Joseph; Orr, Mark; Harrison, Galen; Hurt, Benjamin; Chen, Jiangzhuo; Vullikanti, Anil; Marathe, Madhav; Hoops, Stefan; Bhattacharya, Parantapa; Machi, Dustin; Chen, Shi; Paul, Rajib; Janies, Daniel; Thill, Jean-Claude; Galanti, Marta; Yamana, Teresa K.; Pei, Sen; Shaman, Jeffrey L.; Healy, Jessica M.; Slayton, Rachel B.; Biggerstaff, Matthew; Johansson, Michael A.; Runge, Michael C.; Viboud, Cecile Share Save Share Save Epidemiological and economic impact of COVID-19 in the USChen, Jiangzhuo; Vullikanti, Anil; Santos, Joost; Venkatramanan, Srinivasan; Hoops, Stefan; Mortveit, Henning; Lewis, Bryan; You, Wen; Eubank, Stephen; Marathe, Madhav; Barrett, Chris; Marathe, Achla Share Save Forecasting influenza activity using machine-learned mobility mapVenkatramanan, Srinivasan; Sadilek, Adam; Fadikar, Arindam; Barrett, Christopher L.; Biggerstaff, Matthew; Chen, Jiangzhuo; Dotiwalla, Xerxes; Eastham, Paul; Gipson, Bryant; Higdon, Dave; Kucuktunc, Onur; Lieber, Allison; Lewis, Bryan L.; Reynolds, Zane; Vullikanti, Anil K.; Wang, Lijing; Marathe, Madhav Share Save Medical costs of keeping the US economy open during COVID-19Chen, Jiangzhuo; Vullikanti, Anil; Hoops, Stefan; Mortveit, Henning; Lewis, Bryan; Venkatramanan, Srinivasan; You, Wen; Eubank, Stephen; Marathe, Madhav; Barrett, Chris; Marathe, Achla Share Save Share Save 
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