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Krzysztof Fidelis

University of California System

50H-index
133Paper Count
9.9KCitation Count
Published Papers 58
Publication Date
Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI
err2025-11-03
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errOAAI
errAndriy Kryshtafovych; Torsten Schwede; Maya Topf; Krzysztof Fidelis; John Moult
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Protein Target Highlights in CASP16: Insights From the Structure Providers
err2025-10-01
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errAlexander, Leila T.; Follonier, Oceane M.; Kryshtafovych, Andriy; Abesamis, Kim; Bibi-Triki, Sabrina; Box, Henry G.; Breyton, Cecile; Bringel, Francoise; Carrique, Loic; d'Acapito, Alessio; Dong, Gang; Dubois, Rebecca; Fass, Deborah; Fiesco, Juliana Martinez; Fox, Daniel R.; Grimes, Jonathan M.; Grinter, Rhys; Jenkins, Matthew; Kamyshinsky, Roman; Keown, Jeremy R.; Lackner, Gerald; Lammers, Michael; Liu, Shiheng; Lovering, Andrew L.; Malinauskas, Tomas; Masquida, Benoit; Palm, Gottfried J.; Siebold, Christian; Su, Tiantian; Zhang, Ping; Zhou, Z. Hong; Fidelis, Krzysztof; Topf, Maya; Moult, John; Schwede, Torsten
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Updates to the CASP Infrastructure in 2024
err2025-09-01
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errAndriy Kryshtafovych; Maciej Milostan; Marc F. Lensink; Sameer Velankar; Alexandre M. J. J. Bonvin; John Moult; Krzysztof Fidelis
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Critical assessment of methods of protein structure prediction (CASP)-Round XV
err2023-11-02
err31
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errKryshtafovych, Andriy; Schwede, Torsten; Topf, Maya; Fidelis, Krzysztof; Moult, John
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Protein target highlights in CASP15: Analysis of models by structure providers
err2023-07-26
err12
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errAlexander, Leila T.; Durairaj, Janani; Kryshtafovych, Andriy; Abriata, Luciano A.; Bayo, Yusupha; Bhabha, Gira; Breyton, Cecile; Caulton, Simon G.; Chen, James; Degroux, Seraphine; Ekiert, Damian C.; Erlandsen, Benedikte S.; Freddolino, Peter L.; Gilzer, Dominic; Greening, Chris; Grimes, Jonathan M.; Grinter, Rhys; Gurusaran, Manickam; Hartmann, Marcus D.; Hitchman, Charlie J.; Keown, Jeremy R.; Kropp, Ashleigh; Kursula, Petri; Lovering, Andrew L.; Lemaitre, Bruno; Lia, Andrea; Liu, Shiheng; Logotheti, Maria; Lu, Shuze; Markusson, Sigurbjorn; Miller, Mitchell D.; Minasov, George; Niemann, Hartmut H.; Opazo, Felipe; Phillips Jr, George N. N.; Davies, Owen R.; Rommelaere, Samuel; Rosas-Lemus, Monica; Roversi, Pietro; Satchell, Karla; Smith, Nathan; Wilson, Mark A.; Wu, Kuan-Lin; Xia, Xian; Xiao, Han; Zhang, Wenhua; Zhou, Z. Hong; Fidelis, Krzysztof; Topf, Maya; Moult, John; Schwede, Torsten
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New prediction categories in CASP15
err2023-06-12
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errKryshtafovych, Andriy; Antczak, Maciej; Szachniuk, Marta; Zok, Tomasz; Kretsch, Rachael C.; Rangan, Ramya; Pham, Phillip; Das, Rhiju; Robin, Xavier; Studer, Gabriel; Durairaj, Janani; Eberhardt, Jerome; Sweeney, Aaron; Topf, Maya; Schwede, Torsten; Fidelis, Krzysztof; Moult, John
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Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin
err2023-04-25
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errWydorski, Pawel M. M.; Osipiuk, Jerzy; Lanham, Benjamin T. T.; Tesar, Christine; Endres, Michael; Engle, Elizabeth; Jedrzejczak, Robert; Mullapudi, Vishruth; Michalska, Karolina; Fidelis, Krzysztof; Fushman, David; Joachimiak, Andrzej; Joachimiak, Lukasz A. A.
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Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2
err2021-10-19
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errHuang, Yuanpeng Janet; Zhang, Ning; Bersch, Beate; Fidelis, Krzysztof; Inouye, Masayori; Ishida, Yojiro; Kryshtafovych, Andriy; Kobayashi, Naohiro; Kuroda, Yutaka; Liu, Gaohua; LiWang, Andy; Swapna, G. V. T.; Wu, Nan; Yamazaki, Toshio; Montelione, Gaetano T.
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Target highlights in CASP14: Analysis of models by structure providers
err2021-10-10
err26
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errAlexander, Leila T.; Lepore, Rosalba; Kryshtafovych, Andriy; Adamopoulos, Athanassios; Alahuhta, Markus; Arvin, Ann M.; Bomble, Yannick J.; Bottcher, Bettina; Breyton, Cecile; Chiarini, Valerio; Chinnam, Naga Babu; Chiu, Wah; Fidelis, Krzysztof; Grinter, Rhys; Gupta, Gagan D.; Hartmann, Marcus D.; Hayes, Christopher S.; Heidebrecht, Tatjana; Ilari, Andrea; Joachimiak, Andrzej; Kim, Youngchang; Linares, Romain; Lovering, Andrew L.; Lunin, Vladimir V.; Lupas, Andrei N.; Makbul, Cihan; Michalska, Karolina; Moult, John; Mukherjee, Prasun K.; Nutt, William Sam; Oliver, Stefan L.; Perrakis, Anastassis; Stols, Lucy; Tainer, John A.; Topf, Maya; Tsutakawa, Susan E.; Valdivia-Delgado, Mauricio; Schwede, Torsten
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Critical assessment of methods of protein structure prediction (CASP)-Round XIV
err2021-10-07
err293
errOAAI
errKryshtafovych, Andriy; Schwede, Torsten; Topf, Maya; Fidelis, Krzysztof; Moult, John
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Modeling SARS-CoV-2 proteins in the CASP-commons experiment
err2021-10-05
err14
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errKryshtafovych, Andriy; Moult, John; Billings, Wendy M.; Della Corte, Dennis; Fidelis, Krzysztof; Kwon, Sohee; Olechnoyic, Kliment; Seok, Chaok; Venclovas, Ceslovas; Won, Jonghun
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Assessment of chemical-crosslink-assisted protein structure modeling in CASP13 (vol 87, pg 1283, 2019)
err2020-01-03
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errFajardo, J. Eduardo; Shrestha, Rojan; Gil, Nelson; Belsom, Adam; Crivelli, Silvia N.; Czaplewski, Cezary; Fidelis, Krzysztof; Grudinin, Sergei; Karasikov, Mikhail; Karczynska, Agnieszka S.; Kryshtafovych, Andriy; Leitner, Alexander; Liwo, Adam; Lubecka, Emilia A.; Monastyrskyy, Bohdan; Pages, Guillaume; Rappsilber, Juri; Sieradzan, Adam K.; Sikorska, Celina; Trabjerg, Esben; Fiser, Andras
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Protein structure prediction assisted with sparse NMR data in CASP13
err2019-11-11
err19
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errSala, Davide; Huang, Yuanpeng Janet; Cole, Casey A.; Snyder, David A.; Liu, Gaohua; Ishida, Yojiro; Swapna, G. V. T.; Brock, Kelly P.; Sander, Chris; Fidelis, Krzysztof; Kryshtafovych, Andriy; Inouye, Masayori; Tejero, Roberto; Valafar, Homayoun; Rosato, Antonio; Montelione, Gaetano T.
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Assessing the accuracy of contact predictions in CASP13
err2019-10-24
err58
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errShrestha, Rojan; Fajardo, Eduardo; Gil, Nelson; Fidelis, Krzysztof; Kryshtafovych, Andriy; Monastyrskyy, Bohdan; Fiser, Andras
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Critical assessment of methods of protein structure prediction (CASP)-Round XIII
err2019-10-23
err352
errOAAI
errKryshtafovych, Andriy; Schwede, Torsten; Topf, Maya; Fidelis, Krzysztof; Moult, John
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Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences
err2019-10-16
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errHura, Greg L.; Hodge, Curtis D.; Rosenberg, Daniel; Guzenko, Dmytro; Duarte, Jose M.; Monastyrskyy, Bohdan; Grudinin, Sergei; Kryshtafovych, Andriy; Tainer, John A.; Fidelis, Krzysztof; Tsutakawa, Susan E.
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Assessment of chemical-crosslink-assisted protein structure modeling in CASP13
err2019-10-07
err22
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errFajardo, J. Eduardo; Shrestha, Rojan; Gil, Nelson; Belsom, Adam; Crivelli, Silvia N.; Czaplewski, Cezary; Fidelis, Krzysztof; Grudinin, Sergei; Karasikov, Mikhail; Karczynska, Agnieszka S.; Kryshtafovych, Andriy; Leitner, Alexander; Liwo, Adam; Lubecka, Emilia A.; Monastyrskyy, Bohdan; Pages, Guillaume; Rappsilber, Juri; Sieradzan, Adam K.; Sikorska, Celina; Trabjerg, Esben; Fiser, Andras
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Target highlights in CASP13: Experimental target structures through the eyes of their authors
err2019-09-09
err11
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errLepore, Rosalba; Kryshtafovych, Andriy; Alahuhta, Markus; Veraszto, Harshul A.; Bomble, Yannick J.; Bufton, Joshua C.; Bullock, Alex N.; Caba, Cody; Cao, Hongnan; Davies, Owen R.; Desfosses, Ambroise; Dunne, Matthew; Fidelis, Krzysztof; Goulding, Celia W.; Gurusaran, Manickam; Gutsche, Irina; Harding, Christopher J.; Hartmann, Marcus D.; Hayes, Christopher S.; Joachimiak, Andrzej; Leiman, Petr G.; Loppnau, Peter; Lovering, Andrew L.; Lunin, Vladimir V.; Michalska, Karolina; Mir-Sanchis, Ignacio; Mitra, Alok; Moult, John; Phillips, George N., Jr.; Pinkas, Daniel M.; Rice, Phoebe A.; Tong, Yufeng; Topf, Maya; Walton, Jonathan D.; Schwede, Torsten
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Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy
err2018-02-07
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errOgorzalek, Tadeusz L.; Hura, Greg L.; Belsom, Adam; Burnett, Kathryn H.; Kryshtafovych, Andriy; Tainer, John A.; Rappsilber, Juri; Tsutakawa, Susan E.; Fidelis, Krzysztof
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Critical assessment of methods of protein structure prediction (CASP)Round XII
err2017-12-15
err258
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errMoult, John; Fidelis, Krzysztof; Kryshtafovych, Andriy; Schwede, Torsten; Tramontano, Anna
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