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Narutoshi Kamiya

university of hyogo

29H-index
148Paper Count
2.6KCitation Count
Published Papers 44
Publication Date
Elucidating Ligand Charge Effects in MR1 Cell-Surface Translocation Using Molecular Simulations
err2026-02-10
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PREAI
errToshiki Fujii; Mitsugu Araki; Shigeyuki Matsumoto; Biao Ma; Takao Otsuka; Gert-Jan Bekker; Narutoshi Kamiya; Hiroaki Ohno; Shinsuke Inuki; Yasushi Okuno
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Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity
err2024-11-01
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PREAI
errNumoto, Nobutaka; Kondo, Fumiya; Bekker, Gert-Jan; Liao, Zengwei; Yamashita, Mitsuaki; Iida, Akira; Ito, Nobutoshi; Kamiya, Narutoshi; Oda, Masayuki
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Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase
err2024-10-12
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errOAAI
errAraki, Mitsugu; Ekimoto, Toru; Takemura, Kazuhiro; Matsumoto, Shigeyuki; Tamura, Yunoshin; Kokubo, Hironori; Bekker, Gert-Jan; Yamane, Tsutomu; Isaka, Yuta; Sagae, Yukari; Kamiya, Narutoshi; Ikeguchi, Mitsunori; Okuno, Yasushi
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Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
err2024-05-16
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PREAI
errBekker, Gert-Jan; Oshima, Kanji; Araki, Mitsugu; Okuno, Yasushi; Kamiya, Narutoshi
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Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations
err2024-01-10
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errOAAI
errBekker, Gert-Jan; Fukunishi, Yoshifumi; Higo, Junichi; Kamiya, Narutoshi
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Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model
err2023-12-26
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PREAI
errKanada, Ryo; Tokuhisa, Atsushi; Nagasaka, Yusuke; Okuno, Shingo; Amemiya, Koichiro; Chiba, Shuntaro; Bekker, Gert-Jan; Kamiya, Narutoshi; Kato, Koichiro; Okuno, Yasushi
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Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
err2023-03-30
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errOAAI
errBekker, Gert-Jan; Araki, Mitsugu; Oshima, Kanji; Okuno, Yasushi; Kamiya, Narutoshi
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Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule
err2022-08-13
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errOAAI
errHigo, Junichi; Kasahara, Kota; Bekker, Gert-Jan; Ma, Benson; Sakuraba, Shun; Iida, Shinji; Kamiya, Narutoshi; Fukuda, Ikuo; Kono, Hidetoshi; Fukunishi, Yoshifumi; Nakamura, Haruki
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Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics
err2021-05-14
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errOAAI
errAraki, Mitsugu; Matsumoto, Shigeyuki; Bekker, Gert-Jan; Isaka, Yuta; Sagae, Yukari; Kamiya, Narutoshi; Okuno, Yasushi
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Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nose-Hoover Equation
err2021-04-09
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PREAI
errMoritsugu, Kei; Takeuchi, Koh; Kamiya, Narutoshi; Higo, Junichi; Yasumatsu, Isao; Fukunishi, Yoshifumi; Fukuda, Ikuo
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Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities
err2021-03-17
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errOAAI
errHayami, Tomonori; Kamiya, Narutoshi; Kasahara, Kota; Kawabata, Takeshi; Kurita, Jun-ichi; Fukunishi, Yoshifumi; Nishimura, Yoshifumi; Nakamura, Haruki; Higo, Junichi
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Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
err2021-03-03
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errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Fukunishi, Yoshifumi; Kamiya, Narutoshi
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Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability
err2020-12-24
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PREAI
errEmori, Miho; Numoto, Nobutaka; Senga, Akane; Bekker, Gert-Jan; Kamiya, Narutoshi; Kobayashi, Yuma; Ito, Nobutoshi; Kawai, Fusako; Oda, Masayuki
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Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling
err2020-09-10
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errOAAI
errHigo, Junichi; Kawabata, Takeshi; Kusaka, Ayumi; Kasahara, Kota; Kamiya, Narutoshi; Fukuda, Ikuo; Mori, Kentaro; Hata, Yutaka; Fukunishi, Yoshifumi; Nakamura, Haruki
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Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns
err2020-05-29
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errOAAI
errTokuhisa, Atsushi; Kanada, Ryo; Chiba, Shuntaro; Terayama, Kei; Isaka, Yuta; Ma, Biao; Kamiya, Narutoshi; Okuno, Yasushi
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Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations
err2020-01-29
err31
errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Kamiya, Narutoshi
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Thermal Stability of Single-Domain-Antibodies Estimated by MD Simulations
err2019-02-01
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errOAAI
errKamiya, Narutoshi; Ma, Benson; Bekker, Gert-Jan
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