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J

Jacob Beal

international gene synthesis consortium

39H-index
297Paper Count
5.9KCitation Count
Published Papers 59
Publication Date
The limits of sequence-based biosecurity screening tools in the age of AI-assisted protein design
err2026-07-26
err0
errOAAI
errBJ Bruce J. Wittmann; NE Nicole E. Wheeler † ‡; ST Steven T. Murphy ‡; TM Tom Mitchell ‡; BR Brittany Rife Magalis ‡; BT Bryan T. Gemler ‡; KF Kevin Flyangolts ‡; JD James Diggans ‡; AC Adam Clore ‡; JB Jacob Beal ‡; CB Craig Bartling ‡; TA Tessa Alexanian ‡; EH Eric Horvitz
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Beyond sequence similarity: toward function-based screening of nucleic acid synthesis
err2026-05-14
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errOAAI
errGR Gary R. Abel Jr; TA Tessa Alexanian; CB Craig Bartling; JB Jacob Beal; SC Samuel Curtis; KF Kevin Flyangolts; LF Leonard Foner; SP Samuel P. Forry; GD Gene D. Godbold; EH Eric Horvitz; BH Bin Hu; CM Corey M. Hudson; CJ Caitlin Jagla; RL Rassin Lababidi; SL Sheng Lin-Gibson; BR Brittany Rife Magalis; JP Jaspreet Pannu; SR Sebastian Rivera; DR David Ross; BJ Bruce J. Wittmann; JD James Diggans
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Inter-tool Analysis of a NIST Dataset for Assessing Baseline Nucleic Acid Sequence Screening
err2025-12-01
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PREAI
errLaird, Tyler S.; Flyangolts, Kevin; Bartling, Craig; Gemler, Bryan T.; Beal, Jacob; Mitchell, Tom; Murphy, Steven T.; Berlips, Jens; Foner, Leonard; Doughty, Ryan; Quintana, Felix; Nute, Michael; Treangen, Todd J.; Godbold, Gene; Ternus, Krista; Alexanian, Tessa; Wheeler, Nicole; Forry, Samuel P.
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Strengthening nucleic acid biosecurity screening against generative protein design tools
errScience
IF45.8
err2025-10-02
err0
PREAI
errBruce J. Wittmann; Tessa Alexanian; Craig Bartling; Jacob Beal; Adam Clore; James Diggans; Kevin Flyangolts; Bryan T. Gemler; Tom Mitchell; Steven T. Murphy; Nicole E. Wheeler; Eric Horvitz
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Development of CRISPRi Orthogonal Repression Systems in Plant Cells Using Synthetic Variants of the Figwort Mosaic Virus 34S Promoter with Two Identical sgRNA Binding Sites
err2025-07-11
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PREAI
errMohammad Majdi; Nancy J. Wahl; Li Li; Gabriella King; Helen Scott; Jacob Beal; Scott C. Lenaghan; Alessandro Occhialini
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Standardized Representation of Parts and Assembly for Build Planning
err2023-11-13
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PREAI
errBeal, Jacob; Selvarajah, Vinoo; Chambonnier, Gael; Haddock, Traci; Vignoni, Alejandro; Vidal, Gonzalo; Roehner, Nicholas
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Studying pathogens degrades BLAST-based pathogen identification
err2023-04-03
err8
errOAAI
errBeal, Jacob; Clore, Adam; Manthey, Jeff
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Excel-SBOL Converter: Creating SBOL from Excel Templates and Vice Versa
err2023-01-03
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errOAAI
errMante, Jeanet; Abam, Julian; Samineni, Sai P.; Potzsch, Isabel M.; Beal, Jacob; Myers, Chris J.
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Near-optimal knowledge-free resilient leader election
err2022-12-01
err3
errOAAI
errMo, Yuanqiu; Audrito, Giorgio; Dasgupta, Soura; Beal, Jacob
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Building the Plant SynBio Toolbox through Combinatorial Analysis of DNA Regulatory Elements
err2022-07-28
err9
errOAAI
errPfotenhauer, Alexander C.; Occhialini, Alessandro; Nguyen, Mary-Anne; Scott, Helen; Dice, Lezlee T.; Harbison, Stacee A.; Li, Li; Reuter, D. Nikki; Schimel, Tayler M.; Stewart, C. Neal, Jr.; Beal, Jacob; Lenaghan, Scott C.
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pySBOL3: SBOL3 for Python Programmers
err2022-06-29
err2
PREAI
errMitchell, Tom; Beal, Jacob; Bartley, Bryan
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Simulation-Based Engineering of Time-Delayed Safety Switches for Safer Gene Therapies
err2022-04-12
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PREAI
errScott, Helen; Sun, Dashan; Beal, Jacob; Kiani, Samira
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Meeting Measurement Precision Requirements for Effective Engineering of Genetic Regulatory Networks
err2022-02-14
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errOAAI
errBeal, Jacob; Teague, Brian; Sexton, John T.; Castillo-Hair, Sebastian; DeLateur, Nicholas A.; Samineni, Meher; Tabor, Jeffrey J.; Weiss, Ron
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Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis
err2022-01-31
err5
PREAI
errBryce, Daniel; Goldman, Robert P.; DeHaven, Matthew; Beal, Jacob; Bartley, Bryan; Nguyen, Tramy T.; Walczak, Nicholas; Weston, Mark; Zheng, George; Nowak, Josh; Lee, Peter; Stubbs, Joe; Gaffney, Niall; Vaughn, Matthew W.; Myers, Chris John; Moseley, Robert C.; Haase, Steven; Deckard, Anastasia; Cummins, Bree; Leiby, Nick
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Intent Parser: A Tool for Codification and Sharing of Experimental Design
err2021-12-09
err3
PREAI
errNguyen, Tramy; Walczak, Nicholas; Sumorok, Daniel; Weston, Mark; Beal, Jacob
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Synthetic Biology Curation Tools (SYNBICT)
err2021-11-10
err4
PREAI
errRoehner, Nicholas; Mante, Jeanet; Myers, Chris J.; Beal, Jacob
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Curation Principles Derived from the Analysis of the SBOL iGEM Data Set
err2021-09-21
err5
errOAAI
errMante, Jeanet; Roehner, Nicholas; Keating, Kevin; McLaughlin, James Alastair; Young, Eric; Beal, Jacob; Myers, Chris J.
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Quantitative characterization of recombinase-based digitizer circuits enables predictable amplification of biological signals
err2021-07-15
err8
errOAAI
errKiwimagi, Katherine A.; Letendre, Justin H.; Weinberg, Benjamin H.; Wang, Junmin; Chen, Mingzhe; Watanabe, Leandro; Myers, Chris J.; Beal, Jacob; Wong, Wilson W.; Weiss, Ron
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