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F

Frederick H. Streitz

lawrence livermore national laboratory

28H-index
110Paper Count
4.1KCitation Count
Published Papers 17
Publication Date
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Free Energy and Flexibility Analysis of Autoinhibited Human BRAF
errJournal of Chemical Information and Modeling
IF5.3
err2026-04-21
err0
errOAAI
errJeremy O. B. Tempkin; Fikret Aydin; Sebnem Essiz; Yue Yang; Timothy S. Carpenter; David E. Durrant; Deborah K. Morrison; Helgi I. Ingólfsson; Frederick H. Streitz; Dwight V. Nissely; Felice C. Lightstone; Xiaohua Zhang
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Integrating Ultra-Coarse-Grained Protein Models into Accessible Workflows for Multiscale Molecular Dynamics
errACS Omega
IF4.3
err2025-10-22
err0
errOAAI
errBryce Tu Chi; Stephanie Fulcar; Jonathan Ipe; Olivia Schleifer; Rohan Subramanian; Claire Vlases; Naim Matasci; Konstantia Georgouli; Loïc Pottier; Tim Hsu; Timothy S. Carpenter; Dwight V. Nissley; Felice C. Lightstone; Frederick H. Streitz; Helgi I. Ingólfsson; Fikret Aydin
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Dynamics and lipid membrane coupling of the RAS-RAF complex revealed via multiscale simulations
errBiophysical Journal
IF3.1
err2025-08-22
err0
errOAAI
errTimothy S. Carpenter; Fikret Aydin; Chris Neale; Que N. Van; Xiaohua Zhang; Harsh Bhatia; Jason W. Sidabras; Peter H. Frank; Konstantia Georgouli; Jeremy O.B. Tempkin; Violeta Burns Casamayor; Gulcin Gulten; Rebika Shrestha; Debanjan Goswami; Francesco Di Natale; Joseph R. Chavez; Adam Moody; Joseph Y. Moon; Tomas Oppelstrup; James N. Glosli; Gautham Dharuman; Sergio Wong; Shusen Liu; Nicolas W. Hengartner; Cesar A. López; Kien Nguyen; Christopher B. Stanley; Liam G. Stanton; Lara Patel; Tyler Reddy; Thomas J. Turbyville; Brian Van Essen; Peer-Timo Bremer; Felice C. Lightstone; Andrew G. Stephen; Sandrasegaram Gnanakaran; Frank McCormick; Dwight V. Nissley; Frederick H. Streitz; Helgi I. Ingólfsson
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Enhanced Exploration of Protein Conformational Space through Integration of Ultra-Coarse-Grained Models to Multiscale Workflows
errJOURNAL OF PHYSICAL CHEMISTRY B
IF2.9
err2025-05-08
err0
errOAAI
errAydin, Fikret; Georgouli, Konstantia; Pottier, Loic; Oppelstrup, Tomas; Carpenter, Timothy S.; Tempkin, Jeremy O. B.; Bremer, Peer-Timo; Nissley, Dwight V.; Streitz, Frederick H.; Lightstone, Felice C.; Ingolfsson, Helgi I.
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Generating Protein Structures for Pathway Discovery Using Deep Learning
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-10-10
err0
errOAAI
errGeorgouli, Konstantia; Stephany, Robert R.; Tempkin, Jeremy O. B.; Santiago, Claudio; Aydin, Fikret; Heimann, Mark A.; Pottier, Loic; Zhang, Xiaohua; Carpenter, Timothy S.; Hsu, Tim; Nissley, Dwight V.; Streitz, Frederick H.; Lightstone, Felice C.; Ingolfsson, Helgi I.; Bremer, Peer-Timo
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Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane (vol 7, 242 , 2024)
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-04-11
err0
errOAAI
errShrestha, Rebika; Carpenter, Timothy S.; Van, Que N.; Agamasu, Constance; Tonelli, Marco; Aydin, Fikret; Chen, De; Gulten, Gulcin; Glosli, James N.; Lopez, Cesar A.; Oppelstrup, Tomas; Neale, Chris; Gnanakaran, Sandrasegaram; Gillette, William K.; Ingolfsson, Helgi I.; Lightstone, Felice C.; Stephen, Andrew G.; Streitz, Frederick H.; Nissley, Dwight V.; Turbyville, Thomas J.
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Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-02-28
err8
errOAAI
errShrestha, Rebika; Carpenter, Timothy S.; Van, Que N.; Agamasu, Constance; Tonelli, Marco; Aydin, Fikret; Chen, De; Gulten, Gulcin; Glosli, James N.; Lopez, Cesar A.; Oppelstrup, Tomas; Neale, Chris; Gnanakaran, Sandrasegaram; Gillette, William K.; Ingolfsson, Helgi I.; Lightstone, Felice C.; Stephen, Andrew G.; Streitz, Frederick H.; Nissley, Dwight V.; Turbyville, Thomas J.
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The confluence of machine learning and multiscale simulations
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2023-06-01
err8
errOAAI
errBhatia, Harsh; Aydin, Fikret; Carpenter, Timothy S.; Lightstone, Felice C.; Bremer, Peer-Timo; Ingolfsson, Helgi I.; V. Nissley, Dwight; Streitz, Frederick H.
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Machine Learning-Driven Multiscale Modeling: Bridging the Scales with a Next-Generation Simulation Infrastructure
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-04-19
err18
errOAAI
errIngolfsson, Helgi I.; Bhatia, Harsh; Aydin, Fikret; Oppelstrup, Tomas; Lopez, Cesar A.; Stanton, Liam G.; Carpenter, Timothy S.; Wong, Sergio; Di Natale, Francesco; Zhang, Xiaohua; Moon, Joseph Y.; Stanley, Christopher B.; Chavez, Joseph R.; Nguyen, Kien; Dharuman, Gautham; Burns, Violetta; Shrestha, Rebika; Goswami, Debanjan; Gulten, Gulcin; Van, Que N.; Ramanathan, Arvind; Van Essen, Brian; Hengartner, Nicolas W.; Stephen, Andrew G.; Turbyville, Thomas; Bremer, Peer-Timo; Gnanakaran, S.; Glosli, James N.; Lightstone, Felice C.; Nissley, Dwight V.; Streitz, Frederick H.
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Exploring CRD mobility during RAS/RAF engagement at the membrane
errBIOPHYSICAL JOURNAL
IF3.1
err2022-10-01
err16
errOAAI
errNguyen, Kien; Lopez, Cesar A.; Neale, Chris; Van, Que N.; Carpenter, Timothy S.; Di Natale, Francesco; Travers, Timothy; Tran, Timothy H.; Chan, Albert H.; Bhatia, Harsh; Frank, Peter H.; Tonelli, Marco; Zhang, Xiaohua; Gulten, Gulcin; Reddy, Tyler; Burns, Violetta; Oppelstrup, Tomas; Hengartner, Nick; Simanshu, Dhirendra K.; Bremer, Peer-Timo; Chen, De; Glosli, James N.; Shrestha, Rebika; Turbyville, Thomas; Streitz, Frederick H.; Nissley, Dwight V.; Ingolfsson, Helgi I.; Stephen, Andrew G.; Lightstone, Felice C.; Gnanakaran, Sandrasegaram
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Asynchronous Reciprocal Coupling of Martini 2.2 Coarse-Grained and CHARMM36 All-Atom Simulations in an Automated Multiscale Framework
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2022-07-22
err8
errOAAI
errLopez, Cesar A.; Zhang, Xiaohua; Aydin, Fikret; Shrestha, Rebika; Van, Que N.; Stanley, Christopher B.; Carpenter, Timothy S.; Nguyen, Kien; Patel, Lara A.; Chen, De; Burns, Violetta; Hengartner, Nicolas W.; Reddy, Tyler J. E.; Bhatia, Harsh; Di Natale, Francesco; Tran, Timothy H.; Chan, Albert H.; Simanshu, Dhirendra K.; V. Nissley, Dwight; Streitz, Frederick H.; Stephen, Andrew G.; Turbyville, Thomas J.; Lightstone, Felice C.; Gnanakaran, Sandrasegaram; Ingolfsson, Helgi I.; Neale, Chris
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Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-01-04
err52
errOAAI
errIngolfsson, Helgi I.; Neale, Chris; Carpenter, Timothy S.; Shrestha, Rebika; Lopez, Cesar A.; Tran, Timothy H.; Oppelstrup, Tomas; Bhatia, Harsh; Stanton, Liam G.; Zhang, Xiaohua; Sundram, Shiv; Di Natale, Francesco; Agarwal, Animesh; Dharuman, Gautham; Schumacher, Sara I. L. Kokkila; Turbyville, Thomas; Gulten, Gulcin; Van, Que N.; Goswami, Debanjan; Jean-Francois, Frantz; Agamasu, Constance; Chen, De; Hettige, Jeevapani J.; Travers, Timothy; Sarkar, Sumantra; Surh, Michael P.; Yang, Yue; Moody, Adam; Liu, Shusen; Van Essen, Brian C.; Voter, Arthur F.; Ramanathan, Arvind; Hengartner, Nicolas W.; Simanshu, Dhirendra K.; Stephen, Andrew G.; Bremer, Peer-Timo; Gnanakaran, S.; Glosli, James N.; Lightstone, Felice C.; McCormick, Frank; Nissley, Dwight, V; Streitz, Frederick H.
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ddcMD: A fully GPU-accelerated molecular dynamics program for the Martini force field
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-07-23
err20
errOAAI
errZhang, Xiaohua; Sundram, Shiv; Oppelstrup, Tomas; Kokkila-Schumacher, Sara I. L.; Carpenter, Timothy S.; Ingolfsson, Helgi I.; Streitz, Frederick H.; Lightstone, Felice C.; Glosli, James N.
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Bluegene/L applications:: Parallelism on a massive scale
errINTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS
IF2.5
err2008-02-01
err2
errOAAI
errDe Supinski, Bronis R.; Schulz, Martin; Bulatov, Vasily V.; Cabot, William; Chan, Bor; Cook, Andrew W.; Draegerl, Erik W.; Glosli, James N.; Greenough, Jeffrey A.; Henderson, Keith; Kubota, Alison; Louis, Steve; Miller, Brian J.; Patel, Mehul V.; Spelce, Thomas E.; Streitz, Frederick H.; Williams, Peter L.; Yates, Robert K.; Yoo, Andy; Almasi, George; Bhanot, Gyan; Gara, Alan; Gunnels, John A.; Gupta, Manish; Moreira, Jose; Sexton, James; Walkup, Bob; Archer, Charles; Gygi, Francois; Germann, Timothy C.; Kadau, Kai; Lomdahl, Peter S.; Rendleman, Charles; Welcome, Michael L.; McLendon, William; Hendrickson, Bruce; Franchetti, Franz; Kraig, Stefan; Lorenz, Juergen; Ueberhuber, Christoph W.; Chow, Edmond; Catalyuerek, Uemit
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Calculation of optical absorption in Al across the solid-to-liquid transition
errPHYSICAL REVIEW B
IF3.7
err2005-02-03
err11
PREAI
errBenedict, LX; Klepeis, JE; Streitz, FH
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Energetics of aluminum vacancies in gamma alumina
errPHYSICAL REVIEW B
IF3.7
err1999-07-01
err72
PREAI
errStreitz, FH; Mintmire, JW
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Molecular dynamics simulations of elastic response and tensile failure of alumina
errLANGMUIR
IF3.9
err1996-09-18
err18
PREAI
errStreitz, FH; Mintmire, JW
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Research Directions

No research directions
Co-authors
Cooperation Journals
F
Frank McCormick
H-index: 130 · Papers: 787
D
De Chen
H-index: 86 · Papers: 668
D
Deborah K. Morrison
H-index: 66 · Papers: 236
F
François Gygi
H-index: 60 · Papers: 330
T
Timothy C. Germann
H-index: 57 · Papers: 446
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