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Pavel V. Baranov

Hospital del Mar Research Institute

47H-index
188Paper Count
7.2KCitation Count
Published Papers 88
Publication Date
Human SRD5A1 as a case of gene expression indel-resistance in triple-coding region
err2026-05-18
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errOAAI
errMartina M. Yordanova; Jack A. S. Tierney; Kyle A. Meiklejohn; Conor Slattery; Michał I. Świrski; Mirriam Baranova-Gurvich; Manon Engels; Oscar Ting; Ananth Prakash; Håkon Tjeldnes; Jonathan M. Mudge; Gary Loughran; Juan Antonio Vizcaíno; Dmitry E. Andreev; Pavel V. Baranov
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Expanding the human proteome with microproteins and peptideins
errNature
IF48.5
err2026-05-01
err0
PREAI
errDeutsch, Eric W.; Kok, Leron W.; Mudge, Jonathan M.; Valls, Cristian F.; Jungreis, Irwin; Ruiz-Orera, Jorge; Sun, Zhi; Kusebauch, Ulrike; Fierro-Monti, Ivo; Abelin, Jennifer G.; Alba, M. Mar; Aspden, Julie L.; Bandyopadhyay, Sreejan; Banerjee, Kaushik; Baranov, Pavel V.; Bazzini, Ariel A.; Bourassa, Francis; Bruford, Elspeth A.; Calviello, Lorenzo; Carr, Steven A.; Carvunis, Anne-Ruxandra; Chothani, Sonia; Clauwaert, Jim; Dean, Kellie; Faridi, Pouya; Frankish, Adam; Goodale, Amy; Green, Thomas; Hubner, Norbert; Ingolia, Nicholas T.; Kellis, Manolis; Magrane, Michele; Martin, Maria Jesus; Martinez, Thomas F.; Menschaert, Gerben; Ohler, Uwe; Orchard, Sandra; Potter, Alisa; Rackham, Owen J. L.; Rees, Matthew G.; Root, David E.; Roth, Jennifer A.; Roucou, Xavier; Sialana, Fernando J.; Slavoff, Sarah A.; Swirski, Michal I.; Tierney, Jack A. S.; Trifiro, Felix-Antoine; Valen, Eivind; Vasylieva, Valeriia; Wacholder, Aaron; Wang, Shengbo; Wang, Li; Weissman, Jonathan S.; Wu, Wei; Choudhary, Jyoti S.; Bassani-Sternberg, Michal; Vizcaino, Juan Antonio; Ternette, Nicola; Brunet, Marie A.; Moritz, Robert L.; Prensner, John R.; van Heesch, Sebastiaan
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An expanded reference catalog of translated open reading frames for biomedical research
err2026-04-13
err1
PREAI
errChothani, Sonia; Ruiz-Orera, Jorge; Tierney, Jack A. S.; Swirski, Michal, I; Tjeldnes, Hakon; Kok, Leron W.; Clauwaert, Jim; Deutsch, Eric W.; Alba, M. Mar; Aspden, Julie L.; Baranov, Pavel, V; Bazzini, Ariel Alejandro; Bruford, Elspeth A.; Brunet, Marie A.; Cardon, Tristan; Carvunis, Anne-Ruxandra; Casola, Claudio; Choudhary, Jyoti Sharma; Dean, Kellie; Faridi, Pouya; Fierro-Monti, Ivo; Fournier, Isabelle; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Jiang, Yunzhe; Kellis, Manolis; Martinez, Thomas F.; Menschaert, Gerben; Ni, Pengyu; Orchard, Sandra; Roucou, Xavier; Rozowsky, Joel; Salzet, Michel; Siragusa, Mauro; Slavoff, Sarah; Ternette, Nicola; Vizcaino, Juan Antonio; Wacholder, Aaron; Wu, Wei; Xie, Zhi; Yang, Yucheng T.; Moritz, Robert L.; Valen, Eivind; Mudge, Jonathan; van Heesch, Sebastiaan; Prensner, John R.; Rackham, Owen J. L.
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Mechanism of ribosome stalling by the AMD1 C-terminal tail arrest peptide
err2026-03-27
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errOAAI
errEmir Maldosevic; Fabio S. Boiocchi; Michal I. Swirski; Kyle A. Meiklejohn; Martina M. Yordanova; Pavel V. Baranov; Ahmad Jomaa
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Comprehensive analysis of yeast+1 ribosomal frameshifting unveils a novel stimulator supporting two distinct frameshifting mechanisms
err2025-12-11
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PREAI
errFenton, Darren A.; Bozko, Maria; Swirski, Michal, I; Loughran, Gary; Yordanova, Martina M.; Kufel, Joanna; Atkins, John F.; Baranov, Pavel, V
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Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function
err2025-10-24
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PREAI
errGary Loughran; Raffaella De Pace; Ningyu Ding; Jianchao Zhang; Irwin Jungreis; Gionmattia Carancini; Jonathan M. Mudge; Ji Wang; Manolis Kellis; John F. Atkins; Pavel V. Baranov; Andrew E. Firth; Xiaowei Li; Juan S. Bonifacino; Yousuf A. Khan
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RiboSeq.Org: an integrated suite of resources for ribosome profiling data analysis and visualization
err2024-11-14
err0
errOAAI
errTierney, Jack A. S.; Swirski, Michal, I; Tjeldnes, Hakon; Kiran, Anmol M.; Carancini, Gionmattia; Kiniry, Stephen J.; Michel, Audrey M.; Kufel, Joanna; Valen, Eivind; Baranov, Pavel, V
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Ribosome decision graphs for the representation of eukaryotic RNA translation complexity
err2024-05-07
err2
errOAAI
errTierney, Jack A. S.; Swirski, Michal; Tjeldnes, Hakon; Mudge, Jonathan M.; Kufel, Joanna; Whiffin, Nicola; Valen, Eivind; Baranov, Pavel V.
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Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection
err2024-04-02
err1
errOAAI
errO'Connor, Patrick B. F.; Mahony, Jennifer; Casey, Eoghan; Baranov, Pavel V.; van Sinderen, Douwe; Yordanova, Martina M.
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Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals (vol 15, 228, 2024)
err2024-01-03
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errOAAI
errFedorova, Alla D.; Kiniry, Stephen J.; Andreev, Dmitry E.; Mudge, Jonathan M.; Baranov, Pavel V.
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Impact of eIF2a phosphorylation on the translational landscape of mouse embryonic stem cells
err2024-01-01
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errOAAI
errAmiri, Mehdi; Kiniry, Stephen J.; Possemato, Anthony P.; Mahmood, Niaz; Basiri, Tayebeh; Dufour, Catherine R.; Tabatabaei, Negar; Deng, Qiyun; Bellucci, Michael A.; Harwalkar, Keerthana; Stokes, Matthew P.; Giguere, Vincent; Kaufman, Randal J.; Yamanaka, Yojiro; Baranov, Pavel V.; Tahmasebi, Soroush; Sonenberg, Nahum
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Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing
err2023-11-15
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errOAAI
errAntonov, Ivan V.; O'Loughlin, Sinead; Gorohovski, Alessandro N.; O'Connor, Patrick B. F.; Baranov, Pavel V.; Atkins, John F.
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Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution
err2023-05-22
err8
errOAAI
errGaydukova, Sofya A.; Moldovan, Mikhail A.; Vallesi, Adriana; Heaphy, Stephen M.; Atkins, John F.; Gelfand, Mikhail S.; V. Baranov, Pavel
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Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals
err2022-12-23
err10
errOAAI
errFedorova, Alla D.; Kiniry, Stephen J.; Andreev, Dmitry E.; Mudge, Jonathan M.; Baranov, Pavel V.
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Evolution of naturally arising SARS-CoV-2 defective interfering particles
err2022-10-27
err22
errOAAI
errGirgis, Samer; Xu, Zaikun; Oikonomopoulos, Spyros; Fedorova, Alla D.; Tchesnokov, Egor P.; Gordon, Calvin J.; Schmeing, T. Martin; Goette, Matthias; Sonenberg, Nahum; Baranov, Pavel, V; Ragoussis, Jiannis; Hobman, Tom C.; Pelletier, Jerry
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Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
err2022-10-01
err5
errOAAI
errLoughran, Gary; Fedorova, Alla D.; Khan, Yousuf A.; Atkins, John F.; Baranov, Pavel, V
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Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles
err2022-08-18
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errOAAI
errHedayioglu, Fabio; Mead, Emma J.; O'Connor, Patrick B. F.; Skiotys, Matas; Sansom, Owen J.; Mallucci, Giovanna R.; Willis, Anne E.; Baranov, Pavel, V; Smales, C. Mark; von der Haar, Tobias
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Ghrelin rapidly elevates protein synthesis in vitro by employing the rpS6K-eEF2K-eEF2 signalling axis
err2022-07-16
err1
errOAAI
errZhdanov, Alexander, V; Golubeva, Anna, V; Yordanova, Martina M.; Andreev, Dmitry E.; Ventura-Silva, Ana Paula; Schellekens, Harriet; Baranov, Pavel, V; Cryan, John F.; Papkovsky, Dmitri B.
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Standardized annotation of translated open reading frames
err2022-07-13
err95
errOAAI
errMudge, Jonathan M.; Ruiz-Orera, Jorge; Prensner, John R.; Brunet, Marie A.; Calvet, Ferriol; Jungreis, Irwin; Gonzalez, Jose Manuel; Magrane, Michele; Martinez, Thomas F.; Schulz, Jana Felicitas; Yang, Yucheng T.; Alba, M. Mar; Aspden, Julie L.; Baranov, Pavel V.; Bazzini, Ariel A.; Bruford, Elspeth; Martin, Maria Jesus; Calviello, Lorenzo; Carvunis, Anne-Ruxandra; Chen, Jin; Couso, Juan Pablo; Deutsch, Eric W.; Flicek, Paul; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Ingolia, Nicholas T.; Kellis, Manolis; Menschaert, Gerben; Moritz, Robert L.; Ohler, Uwe; Roucou, Xavier; Saghatelian, Alan; Weissman, Jonathan S.; van Heesch, Sebastiaan
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