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Masaki Miya

institut de recherche pour le développement (ird)

79H-index
270Paper Count
2.0WCitation Count
Published Papers 71
Publication Date
Environmental DNA Metabarcoding Reveals Hidden Fish Diversity and Strong Habitat Partitioning Across Coastal Ecosystems in the Con Dao Archipelago, Vietnam
err2026-04-26
err0
PREAI
errPham, Hung Manh; Panfili, Jacques; Hoang, Huy Duc; Simier, Monique; Miya, Masaki; Durand, Jean-Dominique
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MitoNGS: an online platform to analyze fish metabarcoding data in high resolution
err2026-03-01
err0
PREAI
errZhu, Tao; Sato, Yukuto; Fukunaga, Tsukasa; Miya, Masaki; Iwasaki, Wataru; Yoshizawa, Susumu
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μCeta: A Set of Cetacean-Specific Primers for Environmental DNA Metabarcoding With Minimal Amplification of Non-Target Vertebrates
err2025-10-06
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errOAAI
errUshio, Masayuki; Ozawa, Sachie; Oka, Shin-ichiro; Sado, Tetsuya; Kisero, Robinson O.; Porter, Lindsay; Matrai, Eszter; Miya, Masaki
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Environmental DNA reveals coastal fish biodiversity response across the Atlantic-Indian Ocean environmental transition gradient
err2025-09-11
err0
PREAI
errMathew Seymour; Molly V. Clavey; Masaki Miya; Simon Creer; Gary Carvalho; Sophie von der Heyden
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Development of universal PCR primers for the environmental DNA metabarcoding of cephalopod (Mollusca) diversity
err2025-06-01
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PREAI
errWu, Qianqian; Nakano, Tomoyuki; Ishida, So; Komai, Tomoyuki; Fujiwara, Yoshihiro; Yoshida, Takao; Kawato, Masaru; Oka, Shin-ichiro; Fujikura, Katsunori; Miya, Masaki; Minamoto, Toshifumi
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Reduced evolutionary constraint accompanies ongoing radiation in deep-sea anglerfishes
err2024-11-27
err0
PREAI
errMiller, Elizabeth Christina; Faucher, Rose; Hart, Pamela B.; Rincon-Sandoval, Melissa; Santaquiteria, Aintzane; White, William T.; Baldwin, Carole C.; Miya, Masaki; Betancur-R, Ricardo; Tornabene, Luke; Evans, Kory; Arcila, Dahiana
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Geographic distribution of micronektonic fish communities in the subtropical North Pacific: The effect of primary productivity and nitrogen fixation
err2023-09-01
err3
PREAI
errNagatomo, Yutaro; Horii, Sachiko; Hirai, Junya; Hashihama, Fuminori; Sado, Tetsuya; Fukuchi, Takehiko; Miya, Masaki; Takahashi, Kazutaka
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Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities
err2023-07-11
err9
errOAAI
errUshio, Masayuki; Sado, Testuya; Fukuchi, Takehiko; Sasano, Sachia; Masuda, Reiji; Osada, Yutaka; Miya, Masaki
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Pilot study of a comprehensive resource estimation method from environmental DNA using universal D-loop amplification primers
err2023-03-22
err0
errOAAI
errYoshitake, Kazutoshi; Yanagisawa, Kyohei; Sugimoto, Yuma; Nakamura, Hiroshi; Mizusawa, Nanami; Miya, Masaki; Hamasaki, Koji; Kobayashi, Takanori; Watabe, Shugo; Nishikiori, Kazuomi; Asakawa, Shuichi
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MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years
err2023-02-28
err41
errOAAI
errZhu, Tao; Sato, Yukuto; Sado, Tetsuya; Miya, Masaki; Iwasaki, Wataru
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The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes
err2021-09-13
err20
errOAAI
errde Santana, C. David; Parenti, Lynne R.; Dillman, Casey B.; Coddington, Jonathan A.; Bastos, Douglas A.; Baldwin, Carole C.; Zuanon, Jansen; Torrente-Vilara, Gislene; Covain, Raphael; Menezes, Naercio A.; Datovo, Alessio; Sado, T.; Miya, M.
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Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria)
err2021-05-06
err21
PREAI
errArcila, Dahiana; Hughes, Lily C.; Melendez-Vazquez, Bruce; Baldwin, Carole C.; White, William T.; Carpenter, Kent E.; Williams, Jeffrey T.; Santos, Mudjekeewis D.; Pogonoski, John J.; Miya, Masaki; Orti, Guillermo; Betancur-R, Ricardo
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Discovery of a colossal slickhead (Alepocephaliformes: Alepocephalidae): an active-swimming top predator in the deep waters of Suruga Bay, Japan
err2021-01-25
err7
errOAAI
errFujiwara, Yoshihiro; Kawato, Masaru; Poulsen, Jan Yde; Ida, Hitoshi; Chikaraishi, Yoshito; Ohkouchi, Naohiko; Oguri, Kazumasa; Gotoh, Shinpei; Ozawa, Genki; Tanaka, Sho; Miya, Masaki; Sado, Tetsuya; Kimoto, Katsunori; Toyofuku, Takashi; Tsuchida, Shinji
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Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population
err2020-05-21
err39
errOAAI
errTsuji, Satsuki; Maruyama, Atsushi; Miya, Masaki; Ushio, Masayuki; Sato, Hirotoshi; Minamoto, Toshifumi; Yamanaka, Hiroki
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A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean
err2019-09-11
err38
errOAAI
errFriedman, Matt; Feilich, Kara L.; Beckett, Hermione T.; Alfaro, Michael E.; Faircloth, Brant C.; Cerny, David; Miya, Masaki; Near, Thomas J.; Harrington, Richard C.
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New PCR primers for metabarcoding environmental DNA from freshwater eels, genus Anguilla
err2019-05-28
err20
errOAAI
errTakeuchi, Aya; Sado, Tetsuya; Gotoh, Ryo O.; Watanabe, Shun; Tsukamoto, Katsumi; Miya, Masaki
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