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J

Jeffrey N. Martin

University of California, San Francisco

101H-index
584Paper Count
4.1WCitation Count
Published Papers 251
Publication Date
Persistent cytolytic CD8+ T cells recognize SARS-CoV-2 and herpesvirus epitopes in long COVID
err2026-07-29
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errTongcui Ma; Heeju Ryu; Kailin Yin; Thomas Dalhuisen; Douglas Robbins; Tyrine T. Bailey; Sean A. Thomas; Emily A. Fehrman; J. Daniel Kelly; Jeffrey N. Martin; Kara L. Lynch; Sulggi A. Lee; Steven G. Deeks; Timothy J. Henrich; Michael J. Peluso; Evan W. Newell; Nadia R. Roan
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Artificial Intelligence-Powered Signal Analysis of Loop-Mediated Isothermal Amplification (LAMP) for the Screening of Kaposi Sarcoma at the Point of Care
err2025-11-18
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errDarke Roan Hull; Juan Manuel Boza; Jason Cade Manning; Xinying Chu; Ethel Cesarman; Aggrey Semeere; Jeffrey Martin; David Erickson
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Long COVID trajectories in the prospectively followed RECOVER-Adult US cohort
err2025-11-17
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errTanayott Thaweethai; Sarah E. Donohue; Jeffrey N. Martin; Mady Hornig; Jarrod M. Mosier; Daniel J. Shinnick; Hassan Ashktorab; Ornina Atieh; Andra Blomkalns; Hassan Brim; Yu Chen; Melissa M. Cortez; Nathan B. Erdmann; Valerie Flaherman; Paul Goepfert; Jason D. Goldman; Naomi M. Hamburg; Jenny E. Han; James R. Heath; Vanessa Jacoby; Sarah E. Jolley; J. Daniel Kelly; Sara W. Kelly; C. Kim; Jerry A. Krishnan; Rebecca Letts; Emily B. Levitan; Matthew E. Modes; Grace A. McComsey; Torri D. Metz; Janet M. Mullington; Igho Ofotokun; Megumi J. Okumura; Claudia Castillo Paredes; Thomas F. Patterson; Michael J. Peluso; Rebecca Reece; Zaki A. Sherif; Hyagriv N. Simhan; Christopher Simmons; Upinder Singh; Barbara S. Taylor; Brittany D. Taylor; Joel D. Trinity; Andrea B. Troxel; Paul J. Utz; Andrew J. Vasey; Elisheva Weinberger; Zanthia Wiley; Juan Wisnivesky; Lynn M. Yee; Leora Horwitz; Andrea S. Foulkes; Bruce D. Levy
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Cellular immune signatures associated with fast versus slow clearance of infectious SARS-CoV-2
err2025-11-01
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PREAI
errZemelko, Lily; Tiburcio, Rafael; Wang, Yen Y.; Constantz, Christian M.; Borgo, Gina M.; Spitzer, Matthew H.; Anglin, Khamal; Martin, Jeffrey N.; Peluso, Michael J.; Kelly, J. Daniel; Deitchman, Amelia N.; Rutishauser, Rachel L.
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Oral Microbiome and Inferred Functions Predict Kaposi's Sarcoma Progression
err2025-10-18
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PREAI
errAdam Officer; Wen Meng; David Spellman; Jeffrey Martin; Paige M. Bracci; Mike McGrath; Yufei Huang; Shou-Jiang Gao
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'Impact of a regional damage control surgery pathway on time to surgery for neonates with severe necrotising enterocolitis. A prospective cohort study'
err2025-10-01
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errArul, G. Suren; Jones, Alison; Martin, Jeffrey; Philpott, Alex; Nash, Matt; Hughes, Andrea; Hulbert, Sarah; Tajik, Myrthe; Pachl, Max; Soccorso, Giampiero; Singh, Michael; Jester, Ingo; Patel, Hetal; Lander, Anthony; Kanthimathinathan, Hari Krishnan
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HIV-1 suppression and rare dolutegravir resistance in antiretroviral-experienced people with HIV in Liberia
err2025-05-09
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errMoses, James Soka; Pau, Alice K.; Kuriakose, Safia; Grandits, Greg; Reilly, Cavan; Sherman, Brad T.; Chang, Weizhong; Dai, Lisheng; Khan, Muhammad A.; Highbarger, Helene; Mannah, Moses; McCullough, Johnathan; Chorley, Carla; Morlu, Isaac; Dorbor, Joseph; Bongolee, Ophelia Talweh; Slewion, Rebecca; Akpa, Esther; Wilson, Barthalomew; Poole, April L.; Kopka, Stacy L.; Miller, Tracey; Nuta, Cecelia J.; Lindan, Christina; Glidden, David; Martin, Jeffrey N.; Johnson, Kumblytee L.; Dewar, Robin L.; Wachekwa, Ian; Migueles, Stephen A.
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Associations of inflammatory markers with post-acute clinical findings among survivors of Ebola virus disease with and without viral RNA shedding in the semen in Liberia: a nested case–control study
err2025-05-01
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errMosoka P Fallah; Collin Van Ryn; J Soka Moses; Moses Badio; Tamba Fayiah; Kumblytee Johnson; Dehkontee Gayedyu-Dennis; Allen O Eghrari; Sheri D Weiser; Travis C Porco; Jeffrey N Martin; Michael J Peluso; David R McIlwain; Bonnie Dighero-Kemp; Elizabeth Higgs; Lisa E Hensley; George W Rutherford; Cavan Reilly; J Daniel Kelly
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Circulating neutralizing antibodies and SARS-CoV-2 variant replication following postvaccination infections
err2025-03-10
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errGarcia-Knight, Miguel A.; Kelly, J. Daniel; Lu, Scott; Tassetto, Michel; Goldberg, Sarah A.; Zhang, Amethyst; Pineda-Ramirez, Jesus; Anglin, Khamal; Davidson, Michelle C.; Chen, Jessica Y.; Fortes-Cobby, Maya; Park, Sara; Martinez, Ana; So, Matthew; Donovan, Aidan; Viswanathan, Badri; Richardson, Eugene T.; Mcilwain, David R.; Gaudilliere, Brice; Rutishauser, Rachel L.; Chenna, Ahmed; Petropoulos, Christos; Wrin, Terri; Deeks, Steven G.; Abedi, Glen R.; Saydah, Sharon; Martin, Jeffrey N.; Hagen, Melissa Briggs; Midgley, Claire M.; Peluso, Michael J.; Andino, Raul
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Subtypes A1 and D, and recombinant HIV-1 natural polymorphisms associated with lenacapavir drug resistance in Uganda
err2025-01-30
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errOmoding, Daniel; Musinguzi, Nicholas; Boum II, Yap; Muzoora, Conrad; Kigozi, Simone; Hunt, Peter W.; Martin, Jeffrey N.; Bangsberg, David R.; Haberer, Jessica E.; Siedner, Mark J.; Mccluskey, Suzanne M.; Lee, Guinevere Q.
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Measurement of circulating viral antigens post-SARS-CoV-2 infection in a multicohort study
err2024-12-01
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PREAI
errSwank, Zoe; Borberg, Ella; Chen, Yulu; Senussi, Yasmeen; Chalise, Sujata; Manickas-Hill, Zachary; Yu, Xu G.; Li, Jonathan Z.; Alter, Galit; Henrich, Timothy J.; Kelly, J. Daniel; Hoh, Rebecca; Goldberg, Sarah A.; Deeks, Steven G.; Martin, Jeffrey N.; Peluso, Michael J.; Talla, Aarthi; Li, Xiaojun; Skene, Peter; Bumol, Thomas F.; Torgerson, Troy R.; Czartoski, Julie L.; Mcelrath, M. Juliana; Karlson, Elizabeth W.; Walt, David R.
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Prevalence, Patterns, and Predictors of SARS-CoV-2 RNA and Culturable Virus in Tears of a Case-Ascertained Household Cohort
err2024-09-01
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errSo, Matthew; Goldberg, Sarah A.; Lu, Scott; Garcia-Knight, Miguel; Davidson, Michelle C.; Tassetto, Michel; Murray, Victoria Wong; Anglin, Khamal; Pineda-Ramirez, Jesus; Chen, Jessica Y.; Rugart, Paulina R.; Richardson, Eugene T.; Briggs-Hagen, Melissa; Midgley, Claire M.; Andino, Raul; Seitzman, Gerami D.; Gonzales, John; Peluso, Michael J.; Martin, Jeffrey N.; Kelly, John Daniel
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Early biological markers of post-acute sequelae of SARS-CoV-2 infection
err2024-08-29
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errLu, Scott; Peluso, Michael J.; Glidden, David V.; Davidson, Michelle C.; Lugtu, Kara; Pineda-Ramirez, Jesus; Tassetto, Michel; Garcia-Knight, Miguel; Zhang, Amethyst; Goldberg, Sarah A.; Chen, Jessica Y.; Fortes-Cobby, Maya; Park, Sara; Martinez, Ana; So, Matthew; Donovan, Aidan; Viswanathan, Badri; Hoh, Rebecca; Donohue, Kevin; McIlwain, David R.; Gaudiliere, Brice; Anglin, Khamal; Yee, Brandon C.; Chenna, Ahmed; Winslow, John W.; Petropoulos, Christos J.; Deeks, Steven G.; Briggs-Hagen, Melissa; Andino, Raul; Midgley, Claire M.; Martin, Jeffrey N.; Saydah, Sharon; Kelly, J. Daniel
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Tissue-based T cell activation and viral RNA persist for up to 2 years after SARS-CoV-2 infection
err2024-07-03
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errPeluso, Michael J.; Ryder, Dylan; Flavell, Robert R.; Wang, Yingbing; Levi, Jelena; LaFranchi, Brian H.; Deveau, Tyler-Marie; Buck, Amanda M.; Munter, Sadie E.; Asare, Kofi A.; Aslam, Maya; Koch, Walter; Szabo, Gyula; Hoh, Rebecca; Deswal, Monika; Rodriguez, Antonio E.; Buitrago, Melissa; Tai, Viva; Shrestha, Uttam; Lu, Scott; Goldberg, Sarah A.; Dalhuisen, Thomas; Vasquez, Joshua J.; Durstenfeld, Matthew S.; Hsue, Priscilla Y.; Kelly, J. Daniel; Kumar, Nitasha; Martin, Jeffrey N.; Gambhir, Aruna; Somsouk, Ma; Seo, Youngho; Deeks, Steven G.; Laszik, Zoltan G.; VanBrocklin, Henry F.; Henrich, Timothy J.
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Plasma-based antigen persistence in the post-acute phase of COVID-19
err2024-06-01
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errPeluso, Michael J.; Swank, Zoe N.; Goldberg, Sarah A.; Lu, Scott; Dalhuisen, Thomas; Borberg, Ella; Senussi, Yasmeen; Luna, Michael A.; Song, Celina Chang; Clark, Alexus; Zamora, Andhy; Lew, Megan; Viswanathan, Badri; Huang, Beatrice; Anglin, Khamal; Hoh, Rebecca; Hsue, Priscila Y.; Durstenfeld, Matthew S.; Spinelli, Matthew A.; Glidden, David, V; Henrich, Timothy J.; Kelly, J. Daniel; Deeks, Steven G.; Walt, David R.; Martin, Jeffrey N.
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High-parameter phenotypic characterization reveals a subset of human Th17 cells that preferentially produce IL-17 against M. tuberculosis antigen
err2024-04-18
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errOgongo, Paul; Tran, Anthony; Marzan, Florence; Gingrich, David; Krone, Melissa; Aweeka, Francesca; Lindestam Arlehamn, Cecilia S.; Martin, Jeffrey N.; Deeks, Steven G.; Hunt, Peter W.; Ernst, Joel D.
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Long COVID manifests with T cell dysregulation, inflammation and an uncoordinated adaptive immune response to SARS-CoV-2
err2024-01-11
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errYin, Kailin; Peluso, Michael J.; Luo, Xiaoyu; Thomas, Reuben; Shin, Min-Gyoung; Neidleman, Jason; Andrew, Alicer; Young, Kyrlia C.; Ma, Tongcui; Hoh, Rebecca; Anglin, Khamal; Huang, Beatrice; Argueta, Urania; Lopez, Monica; Valdivieso, Daisy; Asare, Kofi; Deveau, Tyler-Marie; Munter, Sadie E.; Ibrahim, Rania; Staendker, Ludger; Lu, Scott; Goldberg, Sarah A.; Lee, Sulggi A.; Lynch, Kara L.; Kelly, J. Daniel; Martin, Jeffrey N.; Muench, Jan; Deeks, Steven G.; Henrich, Timothy J.; Roan, Nadia R.
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Wilms' tumor 1 (WT1) antigen is overexpressed in Kaposi Sarcoma and is regulated by KSHV vFLIP
err2024-01-08
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errMorales, Ayana E.; Gumenick, Ruby; Genovese, Caitlyn M.; Jang, Yun Yeong; Ouedraogo, Ariene; Ibanez de Garayo, Maite; Pannellini, Tania; Patel, Sanjay; Bott, Matthew E.; Alvarez, Julio; Mun, Sung Soo; Totonchy, Jennifer; Gautam, Archana; Delgado de la Mora, Jesus; Chang, Stephanie; Wirth, Dagmar; Horenstein, Marcelo; Dao, Tao; Scheinberg, David A.; Rubinstein, Paul G.; Semeere, Aggrey; Martin, Jeffrey; Godfrey, Catherine C.; Moser, Carlee B.; Matining, Roy M.; Campbell, Thomas B.; Borok, Margaret Z.; Krown, Susan E.; Cesarman, Ethel
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A cohort-based study of host gene expression: tumor suppressor and innate immune/inflammatory pathways associated with the HIV reservoir size
err2023-11-29
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errDwivedi, Ashok K.; Gornalusse, German G.; Siegel, David A.; Barbehenn, Alton; Thanh, Cassandra; Hoh, Rebecca; Hobbs, Kristen S.; Pan, Tony; Gibson, Erica A.; Martin, Jeffrey; Hecht, Frederick; Pilcher, Christopher; Milush, Jeffrey; Busch, Michael P.; Stone, Mars; Huang, Meei-Li; Reppetti, Julieta; Vo, Phuong M.; Levy, Claire N.; Roychoudhury, Pavitra; Jerome, Keith R.; Hladik, Florian; Henrich, Timothy J.; Deeks, Steven G.; Lee, Sulggi A.
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The breadth of the neutralizing antibody response to original SARS-CoV-2 infection is linked to the presence of Long COVID symptoms
err2023-11-21
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errBuck, Amanda M.; Deitchman, Amelia N.; Takahashi, Saki; Lu, Scott; Goldberg, Sarah A.; Bodansky, Aaron; Kung, Andrew; Hoh, Rebecca; Williams, Meghann C.; Kerbleski, Marian; Maison, David P.; Deveau, Tyler-Marie; Munter, Sadie E.; Lombardo, James; Wrin, Terri; Petropoulos, Christos J.; Durstenfeld, Matthew S.; Hsue, Priscilla Y.; Kelly, J. Daniel; Greenhouse, Bryan; Martin, Jeffrey N.; Deeks, Steven G.; Peluso, Michael J.; Henrich, Timothy J.
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