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J

José N. Onuchic

rice university

104H-index
613Paper Count
4.5WCitation Count
Published Papers 255
Publication Date
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Quantum simulation of charge and exciton transfer in multi-mode models using engineered reservoirs
errNature Communications
IF15.7
err2025-12-05
err0
errOAAI
errVisal So; Midhuna Duraisamy Suganthi; Mingjian Zhu; Abhishek Menon; George Tomaras; Roman Zhuravel; Han Pu; Peter G. Wolynes; José N. Onuchic; Guido Pagano
errShare
errSave
Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenome
errPLOS COMPUTATIONAL BIOLOGY
IF3.6
err2025-12-01
err0
PREAI
errDodero-Rojas, Esteban; Mendieta, Angel; Fehlis, Yao; Mayala, Nicholas; Contessoto, Vinicius G.; Onuchic, Jose N.
errShare
errSave
Sequence-based calculation of local energetic frustration in proteins
errSTRUCTURAL DYNAMICS-US
IF2.3
err2025-11-01
err0
errOAAI
errKuhn, Adam M.; Contessoto, Vinicius G.; Onuchic, Jose N.; Phillips, George N.
errShare
errSave
Mapping the energy landscape of a fold-switching protein MAD2
errProtein Science
IF5.2
err2025-10-11
err0
PREAI
errAnder F. Pereira; Vinícius G. Contessoto; Leandro Martínez; José N. Onuchic
errShare
errSave
Critical Role of Mg2+ Ions in RNA Folding Transitions: Anchoring the A-Minor Twist in the SAM-II Riboswitch
errJOURNAL OF PHYSICAL CHEMISTRY B
IF2.9
err2025-09-01
err0
errOAAI
errViegas, Rafael G.; Sinha, Anushree; Mainan, Avijit; Sanbonmatsu, Karissa Y.; Onuchic, Jose N.; Roy, Susmita; Leite, Vitor B. P.
errShare
errSave
Conformational ligand-directed targeting of calcium-dependent receptors in acute trauma
errMed
IF11.8
err2025-07-02
err0
errOAAI
errRenata Pasqualini; Christopher Markosian; Daniela I. Staquicini; Andrey S. Dobroff; Esteban Dodero-Rojas; Paul C. Whitford; E. Magda Barbu; Julianna K. Bronk; Marina Cardó-Vila; Dawn R. Christianson; Emmanuel Dias-Neto; Wouter H.P. Driessen; Liliana Guzman-Rojas; Serena Marchiò; Diana N. Nunes; Francislon S. de Oliveira; Michael G. Ozawa; Bettina Proneth; Roberto Rangel; Tracey L. Smith; Glauco R. Souza; Fernanda I. Staquicini; Fenny H.F. Tang; Wallace B. Baze; João C. Setubal; John W. Burns; Michael A. Dubick; Juri G. Gelovani; Andriy I. Batchinsky; Jon E. Mogford; Charles E. Wade; John B. Holcomb; Stephen K. Burley; José N. Onuchic; Wadih Arap
errShare
errSave
Simulating biomolecules for physiological timescales
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2025-06-01
err0
PREAI
errWhitford, Paul C.; Onuchic, Jose N.
errShare
errSave
Computational modeling of cancer cell metabolism along the catabolic-anabolic axes
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2025-05-10
err0
errOAAI
errVillela-Castrejon, Javier; Levine, Herbert; Kaipparettu, Benny A.; Onuchic, Jose N.; George, Jason T.; Jia, Dongya
errShare
errSave
The synergy between compartmentalization and motorization in chromatin architecture
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2025-03-21
err0
PREAI
errOliveira, Ronaldo J.; Oliveira Junior, Antonio B.; Contessoto, Vinicius G.; Onuchic, Jose N.
errShare
errSave
Energy landscape analysis of the development of the chromosome structure across the cell cycle
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-03-20
err0
errOAAI
errContessoto, Vinicius G.; Oliveira, Antonio B.; Brahmachari, Sumitabha; Wolynes, Peter G.; Di Pierro, Michele; Onuchic, Jose N.
errShare
errSave
Evolving concepts of the protein universe
errISCIENCE
IF4.1
err2025-02-01
err0
errOAAI
errKulkarni, Prakash; Porter, Lauren; Chou, Tsui-Fen; Chong, Shasha; Chiti, Fabrizio; Schafer, Joseph W.; Mohanty, Atish; Ramisetty, Sravani; Onuchic, Jose N.; Tuite, Mick; Weninger, Keith R.; Koonin, Eugene, V; Salgia, Ravi
errShare
errSave
Trapped-ion quantum simulation of electron transfer models with tunable dissipation
errSCIENCE ADVANCES
IF12.5
err2024-12-20
err0
errOAAI
errSo, Visal; Suganthi, Midhuna Duraisamy; Menon, Abhishek; Zhu, Mingjian; Zhuravel, Roman; Pu, Han; Wolynes, Peter G.; Onuchic, Jose N.; Pagano, Guido
errShare
errSave
Designing proteins: Mimicking natural protein sequence heterogeneity
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2024-11-15
err0
PREAI
errLequerica-Mateos, Marcos; Martin, Jonathan; Onuchic, Jose N.; Morcos, Faruck; Coluzza, Ivan
errShare
errSave
Germline BARD1 variants predispose to mesothelioma by impairing DNA repair and calcium signaling
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-07-11
err1
errOAAI
errNovelli, Flavia; Yoshikawa, Yoshie; Vitto, Veronica Angela Maria; Modesti, Lorenzo; Minaai, Michael; Pastorino, Sandra; Emi, Mitsuru; Kim, Jin-Hee; Kricek, Franz; Bai, Fang; Onuchic, Jose N.; Bononi, Angela; Suarez, Joelle S.; Tanji, Mika; Favaron, Cristina; Zolondick, Alicia A.; Xu, Ronghui; Takanishi, Yasutaka; Wang, Zhanwei; Sakamoto, Greg; Gaudino, Giovanni; Grzymski, Joseph; Grosso, Federica; Schrump, David S.; Pass, Harvey I.; Atanesyan, Lilit; Smout, Jan; Savola, Suvi; Sarin, Kavita Y.; Abolhassani, Hassan; Hammarstrom, Lennart; Pan-Hammarstrom, Qiang; Giorgi, Carlotta; Pinton, Paolo; Yang, Haining; Carbone, Michele
errShare
errSave
Nucleosomes play a dual role in regulating transcription dynamics
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-07-05
err0
errOAAI
errBrahmachari, Sumitabha; Tripathi, Shubham; Onuchic, Jose N.; Levine, Herbert
errShare
errSave
Machine learning in biological physics: From biomolecular prediction to design
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-06-24
err3
errOAAI
errMartin, Jonathan; Mateos, Marcos Lequerica; Onuchic, Jose N.; Coluzza, Ivan; Morcos, Faruck
errShare
errSave
CISD3/MiNT is required for complex I function, mitochondrial integrity, and skeletal muscle maintenance
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-05-23
err3
errOAAI
errNechushtai, Rachel; Rowland, Linda; Karmi, Ola; Marjault, Henri- Baptiste; Nguyen, Thi Thao; Mittal, Shubham; Ahmed, Raheel S.; Grant, Deana; Manrique-Acevedo, Camila; Morcos, Faruck; Onuchic, Jose N.; Mittler, Ron
errShare
errSave
Magnesium ions mitigate metastable states in the regulatory landscape of mRNA elements
errRNA
IF5
err2024-05-22
err0
errOAAI
errDing, Erdong; Chaudhury, Susmit Narayan; Prajapati, Jigneshkumar Dahyabhai; Onuchic, Jose N.; Sanbonmatsu, Karissa Y.
errShare
errSave
RACER-m leverages structural features for sparse T cell specificity prediction
errSCIENCE ADVANCES
IF12.5
err2024-05-17
err3
errOAAI
errWang, Ailun; Lin, Xingcheng; Chau, Kevin Ng; Onuchic, Jose N.; Levine, Herbert; George, Jason T.
errShare
errSave
A phenotypic model for cancer metabolism
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errVillela-Castrejon, Javier; George, Jason T.; Jia, Dongya; Levine, Herbert; Onuchic, Jose N.; Kaipparettu, Benny Abraham
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
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Lewis C. Cantley
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Carlo M. Croce
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Chris Sander
H-index: 191 · Papers: 849
T
Tak W. Mak
H-index: 181 · Papers: 1.6K
J
Jeffrey I. Gordon
H-index: 170 · Papers: 607
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