Not logged in Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells Thrane, Kim; Winge, Marten C. G.; Wang, Hongyu; Chen, Larry; Guo, Margaret G.; Andersson, Alma; Abalo, Xesus M.; Yang, Xue; Kim, Daniel S.; Longo, Sophia K.; Soong, Brian Y.; Meyers, Jordan M.; Reynolds, David L.; McGeever, Aaron; Demircioglu, Deniz; Hasson, Dan; Mirzazadeh, Reza; Rubin, Adam J.; Bae, Gordon H.; Karkanias, Jim; Rieger, Kerri; Lundeberg, Joakim; Ji, Andrew L. Share Save
Spatial multimodal analysis of transcriptomes and metabolomes in tissues Vicari, Marco; Mirzazadeh, Reza; Nilsson, Anna; Shariatgorji, Reza; Bjaerterot, Patrik; Larsson, Ludvig; Lee, Hower; Nilsson, Mats; Foyer, Julia; Ekvall, Markus; Czarnewski, Paulo; Zhang, Xiaoqun; Svenningsson, Per; Kaell, Lukas; Andren, Per E.; Lundeberg, Joakim Share Save
The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia Erickson, Andrew; He, Mengxiao; Berglund, Emelie; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Ludvig; Bergenstrahle, Joseph; Larsson, Ludvig; Galicia, Leire Alonso; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Doultsinos, Dimitrios; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.; Lundeberg, Joakim Share Save
Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples Mirzazadeh, Reza; Andrusivova, Zaneta; Larsson, Ludvig; Newton, Phillip T.; Galicia, Leire Alonso; Abalo, Xesus M.; Avijgan, Mahtab; Kvastad, Linda; Denadai-Souza, Alexandre; Stakenborg, Nathalie; Firsova, Alexandra B.; Shamikh, Alia; Jurek, Aleksandra; Schultz, Niklas; Nister, Monica; Samakovlis, Christos; Boeckxstaens, Guy; Lundeberg, Joakim Share Save
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung Sountoulidis, Alexandros; Marco Salas, Sergio; Braun, Emelie; Avenel, Christophe; Bergenstrahle, Joseph; Theelke, Jonas; Vicari, Marco; Czarnewski, Paulo; Liontos, Andreas; Abalo, Xesus; Andrusivova, Zaneta; Mirzazadeh, Reza; Asp, Michaela; Li, Xiaofei; Hu, Lijuan; Sariyar, Sanem; Martinez Casals, Anna; Ayoglu, Burcu; Firsova, Alexandra; Michaelsson, Jakob; Lundberg, Emma; Waehlby, Carolina; Sundstroem, Erik; Linnarsson, Sten; Lundeberg, Joakim; Nilsson, Mats; Samakovlis, Christos Share Save
The spatial landscape of clonal somatic mutations in benign and malignant tissue Erickson, Andrew; Berglund, Emelie; He, Mengxiao; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Bergenstrahle, Ludvig; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Joseph; Larsson, Ludvig; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D. Share Save
Genome-wide spatial expression profiling in formalin-fixed tissues Villacampa, Eva Gracia; Larsson, Ludvig; Mirzazadeh, Reza; Kvastad, Linda; Andersson, Alma; Mollbrink, Annelie; Kokaraki, Georgia; Monteil, Vanessa; Schultz, Niklas; Appelberg, Karin Sofia; Montserrat, Nuria; Zhang, Haibo; Penninger, Josef M.; Miesbach, Wolfgang; Mirazimi, Ali; Carlson, Joseph; Lundeberg, Joakim Share Save
A recurrent chromosomal inversion suffices for driving escape from oncogene-induced senescence via subTAD reorganization Zampetidis, Christos P.; Galanos, Panagiotis; Angelopoulou, Andriani; Zhu, Yajie; Polyzou, Aikaterini; Karamitros, Timokratis; Kotsinas, Athanassios; Lagopati, Nefeli; Mourkioti, Ioanna; Mirzazadeh, Reza; Polyzos, Alexandros; Garnerone, Silvano; Mizi, Athanasia; Gusmao, Eduardo G.; Sofiadis, Konstantinos; Gal, Zita; Larsen, Dorthe H.; Pefani, Dafni-Eleftheria; Demaria, Marco; Tsirigos, Aristotelis; Crosetto, Nicola; Maya-Mendoza, Apolinar; Papaspyropoulos, Angelos; Evangelou, Konstantinos; Bartek, Jiri; Papantonis, Argyris; Gorgoulis, Vassilis G. Share Save
Super-resolved spatial transcriptomics by deep data fusion Bergenstrahle, Ludvig; He, Bryan; Bergenstrahle, Joseph; Abalo, Xesus; Mirzazadeh, Reza; Thrane, Kim; Ji, Andrew L.; Andersson, Alma; Larsson, Ludvig; Stakenborg, Nathalie; Boeckxstaens, Guy; Khavari, Paul; Zou, James; Lundeberg, Joakim; Maaskola, Jonas Share Save
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples Zhang, Xiaolu; Garnerone, Silvano; Simonetti, Michele; Harbers, Luuk; Nicos, Marcin; Mirzazadeh, Reza; Venesio, Tiziana; Sapino, Anna; Hartman, Johan; Marchio, Caterina; Bienko, Magda; Crosetto, Nicola Share Save
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture Gelali, Eleni; Girelli, Gabriele; Matsumoto, Masahiro; Wernersson, Erik; Custodio, Joaquin; Mota, Ana; Schweitzer, Maud; Ferenc, Katalin; Li, Xinge; Mirzazadeh, Reza; Agostini, Federico; Schell, John P.; Lanner, Fredrik; Crosetto, Nicola; Bienko, Magda Share Save
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RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples Wu, Chenglin; Simonetti, Michele; Rossell, Carla; Mignardi, Marco; Mirzazadeh, Reza; Annaratone, Laura; Marchio, Caterina; Sapino, Anna; Bienko, Magda; Crosetto, Nicola; Nilsson, Mats Share Save
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks Yan, Winston X.; Mirzazadeh, Reza; Garnerone, Silvano; Scott, David; Schneider, Martin W.; Kallas, Tomasz; Custodio, Joaquin; Wernersson, Erik; Li, Yinqing; Gao, Linyi; Federova, Yana; Zetsche, Bernd; Zhang, Feng; Bienko, Magda; Crosetto, Nicola Share Save
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