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Fergal J. Martin
european molecular biology laboratory (embl)
42H-index
130Paper Count
3.5WCitation Count
Published Papers 39
Publication Date
- Publication Date
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High-quality mouse reference genomes reveal the structural complexity of the murine protein-coding landscape.png)
2025-12-01
0
OAAI
Mohab Helmy; Jin U. Li; Xinyu F. Yan; Rachel K. Meade; Elizabeth Anderson; Patrick B. Chen; Anne M. Czechanski; Tomás Di Domenico; Jonathan Flint; Erik Garrison; Marco T.P. Gontijo; Andrea Guarracino; Leanne Haggerty; Edith Heard; Kerstin Howe; Narendra Meena; Fergal J. Martin; Eric A. Miska; Isabell Rall; Navin B. Ramakrishna
2025-12-010OAAIMohab Helmy; Jin U. Li; Xinyu F. Yan; Rachel K. Meade; Elizabeth Anderson; Patrick B. Chen; Anne M. Czechanski; Tomás Di Domenico; Jonathan Flint; Erik Garrison; Marco T.P. Gontijo; Andrea Guarracino; Leanne Haggerty; Edith Heard; Kerstin Howe; Narendra Meena; Fergal J. Martin; Eric A. Miska; Isabell Rall; Navin B. Ramakrishna.png){kind=icon}
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SaveInsights into natural neocentromere evolution from a cattle T2T X chromosome.png)
Nature Communications2025-11-280OAAIPaulene S. Pineda; Callum MacPhillamy; Yan Ren; Tong Chen; Luan Zhong; David L. Adelson; Carey Dessaix; Jose Perez-Silva; Leanne Haggerty; Fergal J. Martin; Cynthia D. K. Bottema; Wayne S. Pitchford; Benjamin D. Rosen; Timothy P. L. Smith; Wai Y. Low
Nature CommunicationsIF15.7
2025-11-280OAAIPaulene S. Pineda; Callum MacPhillamy; Yan Ren; Tong Chen; Luan Zhong; David L. Adelson; Carey Dessaix; Jose Perez-Silva; Leanne Haggerty; Fergal J. Martin; Cynthia D. K. Bottema; Wayne S. Pitchford; Benjamin D. Rosen; Timothy P. L. Smith; Wai Y. LowShareSaveEnsembl 2026NUCLEIC ACIDS RESEARCH2025-11-013OAAIYates, Andrew D.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Branco Lins, Paulo R.; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen, I; Carbajo Martinez, Manuel; Carpenter, Jack; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Dickson, Suzanna; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fairbrother-Browne, Aine; Falola, Oluwadamilare; Fatima, Reham; Gonzalez Martinez, Jose; Gurbich, Tatiana; Hall, Holly; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Lazar, Anna; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela A.; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Nakib Hossain, Syed; Perez-Silva, Jose G.; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Suner, Marie-Marthe; Surapaneni, Likhitha; Tierney, Jack A. S.; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Allen, Jamie M.; Alvarez-Jarreta, Jorge; Cheema, Jitender; Batista da Rocha, Jorge; De silva, Nishadi H.; Tricomi, Francesca Floriana; Giorgetti, Stefano; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Willhoft, Natalie L.; Winterbottom, Andrea; Flint, Bethany R.; Frankish, Adam; Haggerty, Leanne; Hunt, Sarah E.; Clark, Emily L.; Dyer, Sarah C.; Freeberg, Mallory A.; Martin, Fergal J.; Finn, Robert D.
NUCLEIC ACIDS RESEARCHIF13.1
2025-11-013OAAIYates, Andrew D.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Branco Lins, Paulo R.; Brooks, Lucy; Budhanuru Ramaraju, Shashank; Campbell, Lahcen, I; Carbajo Martinez, Manuel; Carpenter, Jack; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Dickson, Suzanna; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fairbrother-Browne, Aine; Falola, Oluwadamilare; Fatima, Reham; Gonzalez Martinez, Jose; Gurbich, Tatiana; Hall, Holly; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaikala, Vinay; Lazar, Anna; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela A.; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Nakib Hossain, Syed; Perez-Silva, Jose G.; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Suner, Marie-Marthe; Surapaneni, Likhitha; Tierney, Jack A. S.; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Allen, Jamie M.; Alvarez-Jarreta, Jorge; Cheema, Jitender; Batista da Rocha, Jorge; De silva, Nishadi H.; Tricomi, Francesca Floriana; Giorgetti, Stefano; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Willhoft, Natalie L.; Winterbottom, Andrea; Flint, Bethany R.; Frankish, Adam; Haggerty, Leanne; Hunt, Sarah E.; Clark, Emily L.; Dyer, Sarah C.; Freeberg, Mallory A.; Martin, Fergal J.; Finn, Robert D.ShareSaveThe Genome Sequence of the Hemlock Woolly Adelgid, Adelges tsugae Annand 19242025-10-010Brunet, Bryan M. T.; Dial, Dustin T.; Burke, Gaelen R.; von Dohlen, Carol D.; Douglas Freitas, Julia; Sanderson, Haley; Chida, Afiya R.; Jones, Samantha J.; Martin, Fergal J.; Haggerty, Leanne; Scherer, Stephen W.; Ragoussis, Ioannis; Jones, Steven J. M.; Foottit, Robert G.; Havill, Nathan P.
2025-10-010PREAI
Brunet, Bryan M. T.; Dial, Dustin T.; Burke, Gaelen R.; von Dohlen, Carol D.; Douglas Freitas, Julia; Sanderson, Haley; Chida, Afiya R.; Jones, Samantha J.; Martin, Fergal J.; Haggerty, Leanne; Scherer, Stephen W.; Ragoussis, Ioannis; Jones, Steven J. M.; Foottit, Robert G.; Havill, Nathan P.ShareSaveEnsembl 2025NUCLEIC ACIDS RESEARCH2024-12-041OAAIDyer, Sarah C.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Beracochea, Martin; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Denni, Sukanya; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Falola, Oluwadamilare; Fatima, Reham; Genez, Thiago; Martinez, Jose Gonzalez; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela Alejandra; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Perez-Silva, Jose G.; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Tsang, Ian; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Cheema, Jitender; da Rocha, Jorge Batista; De Silva, Nishadi H.; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Finn, Robert D.; Freeberg, Mallory A.; Harrison, Peter W.; Martin, Fergal J.; Yates, Andrew D.
NUCLEIC ACIDS RESEARCHIF13.1
2024-12-041OAAIDyer, Sarah C.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Barrera-Enriquez, Vianey Paola; Becker, Arne; Bennett, Ruth; Beracochea, Martin; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Cortes, Lucas A.; Davidson, Claire; Denni, Sukanya; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Falola, Oluwadamilare; Fatima, Reham; Genez, Thiago; Martinez, Jose Gonzalez; Gurbich, Tatiana; Hardy, Matthew; Hollis, Zoe; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Lemos, Diana; Lodha, Disha; Mathlouthi, Nourhen; Merino, Gabriela Alejandra; Merritt, Ryan; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Perez-Silva, Jose G.; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Tsang, Ian; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Cheema, Jitender; da Rocha, Jorge Batista; De Silva, Nishadi H.; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Finn, Robert D.; Freeberg, Mallory A.; Harrison, Peter W.; Martin, Fergal J.; Yates, Andrew D.ShareSaveContinent-wide genomic analysis of the African buffalo (Syncerus caffer)2024-06-290OAAITalenti, Andrea; Wilkinson, Toby; Cook, Elizabeth A.; Hemmink, Johanneke D.; Paxton, Edith; Mutinda, Matthew; Ngulu, Stephen D.; Jayaraman, Siddharth; Bishop, Richard P.; Obara, Isaiah; Hourlier, Thibaut; Garcia Giron, Carlos; Martin, Fergal J.; Labuschagne, Michel; Atimnedi, Patrick; Nanteza, Anne; Keyyu, Julius D.; Mramba, Furaha; Caron, Alexandre; Cornelis, Daniel; Chardonnet, Philippe; Fyumagwa, Robert; Lembo, Tiziana; Auty, Harriet K.; Michaux, Johan; Smitz, Nathalie; Toye, Philip; Robert, Christelle; Prendergast, James G. D.; Morrison, Liam J.
2024-06-290OAAITalenti, Andrea; Wilkinson, Toby; Cook, Elizabeth A.; Hemmink, Johanneke D.; Paxton, Edith; Mutinda, Matthew; Ngulu, Stephen D.; Jayaraman, Siddharth; Bishop, Richard P.; Obara, Isaiah; Hourlier, Thibaut; Garcia Giron, Carlos; Martin, Fergal J.; Labuschagne, Michel; Atimnedi, Patrick; Nanteza, Anne; Keyyu, Julius D.; Mramba, Furaha; Caron, Alexandre; Cornelis, Daniel; Chardonnet, Philippe; Fyumagwa, Robert; Lembo, Tiziana; Auty, Harriet K.; Michaux, Johan; Smitz, Nathalie; Toye, Philip; Robert, Christelle; Prendergast, James G. D.; Morrison, Liam J.ShareSaveA revamped rat reference genome improves the discovery of genetic diversity in laboratory rats2024-04-014OAAIde Jong, Tristan V.; Pan, Yanchao; Rastas, Pasi; Munro, Daniel; Tutaj, Monika; Akil, Huda; Benner, Chris; Chen, Denghui; Chitre, Apurva S.; Chow, William; Colonna, Vincenza; Dalgard, Clifton L.; Demos, Wendy M.; Doris, Peter A.; Garrison, Erik; Geurts, Aron M.; Gunturkun, Hakan M.; Guryev, Victor; Hourlier, Thibaut; Howe, Kerstin; Huang, Jun; Kalbfleisch, Ted; Kim, Panjun; Li, Ling; Mahaffey, Spencer; Martin, Fergal J.; Mohammadi, Pejman; Ozel, Ayse Bilge; Polesskaya, Oksana; Pravenec, Michal; Prins, Pjotr; Sebat, Jonathan; Smith, Jennifer R.; Woods, Leah C. Solberg; Tabakoff, Boris; Tracey, Alan; Uliano-Silva, Marcela; Villani, Flavia; Wang, Hongyang; Sharp, Burt M.; Telese, Francesca; Jiang, Zhihua; Saba, Laura; Wang, Xusheng; Murphy, Terence D.; Palmer, Abraham A.; Kwitek, Anne E.; Dwinell, Melinda R.; Williams, Robert W.; Li, Jun Z.; Chen, Hao
2024-04-014OAAIde Jong, Tristan V.; Pan, Yanchao; Rastas, Pasi; Munro, Daniel; Tutaj, Monika; Akil, Huda; Benner, Chris; Chen, Denghui; Chitre, Apurva S.; Chow, William; Colonna, Vincenza; Dalgard, Clifton L.; Demos, Wendy M.; Doris, Peter A.; Garrison, Erik; Geurts, Aron M.; Gunturkun, Hakan M.; Guryev, Victor; Hourlier, Thibaut; Howe, Kerstin; Huang, Jun; Kalbfleisch, Ted; Kim, Panjun; Li, Ling; Mahaffey, Spencer; Martin, Fergal J.; Mohammadi, Pejman; Ozel, Ayse Bilge; Polesskaya, Oksana; Pravenec, Michal; Prins, Pjotr; Sebat, Jonathan; Smith, Jennifer R.; Woods, Leah C. Solberg; Tabakoff, Boris; Tracey, Alan; Uliano-Silva, Marcela; Villani, Flavia; Wang, Hongyang; Sharp, Burt M.; Telese, Francesca; Jiang, Zhihua; Saba, Laura; Wang, Xusheng; Murphy, Terence D.; Palmer, Abraham A.; Kwitek, Anne E.; Dwinell, Melinda R.; Williams, Robert W.; Li, Jun Z.; Chen, HaoShareSaveHagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences2024-01-1218OAAIYu, Daqi; Ren, Yandong; Uesaka, Masahiro; Beavan, Alan J. S.; Muffato, Matthieu; Shen, Jieyu; Li, Yongxin; Sato, Iori; Wan, Wenting; Clark, James W.; Keating, Joseph N.; Carlisle, Emily M.; Dearden, Richard P.; Giles, Sam; Randle, Emma; Sansom, Robert S.; Feuda, Roberto; Fleming, James F.; Sugahara, Fumiaki; Cummins, Carla; Patricio, Mateus; Akanni, Wasiu; D'Aniello, Salvatore; Bertolucci, Cristiano; Irie, Naoki; Alev, Cantas; Sheng, Guojun; de Mendoza, Alex; Maeso, Ignacio; Irimia, Manuel; Fromm, Bastian; Peterson, Kevin J.; Das, Sabyasachi; Hirano, Masayuki; Rast, Jonathan P.; Cooper, Max D.; Paps, Jordi; Pisani, Davide; Kuratani, Shigeru; Martin, Fergal J.; Wang, Wen; Donoghue, Philip C. J.; Zhang, Yong E.; Pascual-Anaya, Juan
2024-01-1218OAAIYu, Daqi; Ren, Yandong; Uesaka, Masahiro; Beavan, Alan J. S.; Muffato, Matthieu; Shen, Jieyu; Li, Yongxin; Sato, Iori; Wan, Wenting; Clark, James W.; Keating, Joseph N.; Carlisle, Emily M.; Dearden, Richard P.; Giles, Sam; Randle, Emma; Sansom, Robert S.; Feuda, Roberto; Fleming, James F.; Sugahara, Fumiaki; Cummins, Carla; Patricio, Mateus; Akanni, Wasiu; D'Aniello, Salvatore; Bertolucci, Cristiano; Irie, Naoki; Alev, Cantas; Sheng, Guojun; de Mendoza, Alex; Maeso, Ignacio; Irimia, Manuel; Fromm, Bastian; Peterson, Kevin J.; Das, Sabyasachi; Hirano, Masayuki; Rast, Jonathan P.; Cooper, Max D.; Paps, Jordi; Pisani, Davide; Kuratani, Shigeru; Martin, Fergal J.; Wang, Wen; Donoghue, Philip C. J.; Zhang, Yong E.; Pascual-Anaya, JuanShareSaveEnsembl 2024NUCLEIC ACIDS RESEARCH2023-11-1183OAAIHarrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D.
NUCLEIC ACIDS RESEARCHIF13.1
2023-11-1183OAAIHarrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D.ShareSaveComparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectorsBMC GENOMICS2023-07-1911OAAICampbell, Lahcen I.; Nwezeobi, Joachim; van Brunschot, Sharon L.; Kaweesi, Tadeo; Seal, Susan E.; Swamy, Rekha A. R.; Namuddu, Annet; Maslen, Gareth L.; Mugerwa, Habibu; Armean, Irina M.; Haggerty, Leanne; Martin, Fergal J.; Malka, Osnat; Santos-Garcia, Diego; Juravel, Ksenia; Morin, Shai; Stephens, Michael E.; Muhindira, Paul Visendi; Kersey, Paul J.; Maruthi, M. N.; Omongo, Christopher A.; Navas-Castillo, Jesus; Fiallo-Olive, Elvira; Mohammed, Ibrahim Umar; Wang, Hua-Ling; Onyeka, Joseph; Alicai, Titus; Colvin, John
BMC GENOMICSIF3.7
2023-07-1911OAAICampbell, Lahcen I.; Nwezeobi, Joachim; van Brunschot, Sharon L.; Kaweesi, Tadeo; Seal, Susan E.; Swamy, Rekha A. R.; Namuddu, Annet; Maslen, Gareth L.; Mugerwa, Habibu; Armean, Irina M.; Haggerty, Leanne; Martin, Fergal J.; Malka, Osnat; Santos-Garcia, Diego; Juravel, Ksenia; Morin, Shai; Stephens, Michael E.; Muhindira, Paul Visendi; Kersey, Paul J.; Maruthi, M. N.; Omongo, Christopher A.; Navas-Castillo, Jesus; Fiallo-Olive, Elvira; Mohammed, Ibrahim Umar; Wang, Hua-Ling; Onyeka, Joseph; Alicai, Titus; Colvin, JohnShareSavePangenome graph construction from genome alignments with Minigraph-CactusNATURE BIOTECHNOLOGY2023-05-1049
OAAIHickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.
NATURE BIOTECHNOLOGYIF41.7
2023-05-1049OAAIHickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.ShareSaveThe swan genome and transcriptome, it is not all black and whiteGENOME BIOLOGY2023-01-239OAAIKarawita, Anjana C.; Cheng, Yuanyuan; Chew, Keng Yih; Challagulla, Arjun; Kraus, Robert; Mueller, Ralf C.; Tong, Marcus Z. W.; Hulme, Katina D.; Bielefeldt-Ohmann, Helle; Steele, Lauren E.; Wu, Melanie; Sng, Julian; Noye, Ellesandra; Bruxner, Timothy J.; Au, Gough G.; Lowther, Suzanne; Blommaert, Julie; Suh, Alexander; McCauley, Alexander J.; Kaur, Parwinder; Dudchenko, Olga; Aiden, Erez; Fedrigo, Olivier; Formenti, Giulio; Mountcastle, Jacquelyn; Chow, William; Martin, Fergal J.; Ogeh, Denye N.; Thiaud-Nissen, Francoise; Howe, Kerstin; Tracey, Alan; Smith, Jacqueline; Kuo, Richard I.; Renfree, Marilyn B.; Kimura, Takashi; Sakoda, Yoshihiro; McDougall, Mathew; Spencer, Hamish G.; Pyne, Michael; Tolf, Conny; Waldenstroem, Jonas; Jarvis, Erich D.; Baker, Michelle L.; Burt, David W.; Short, Kirsty R.
GENOME BIOLOGYIF9.4
2023-01-239OAAIKarawita, Anjana C.; Cheng, Yuanyuan; Chew, Keng Yih; Challagulla, Arjun; Kraus, Robert; Mueller, Ralf C.; Tong, Marcus Z. W.; Hulme, Katina D.; Bielefeldt-Ohmann, Helle; Steele, Lauren E.; Wu, Melanie; Sng, Julian; Noye, Ellesandra; Bruxner, Timothy J.; Au, Gough G.; Lowther, Suzanne; Blommaert, Julie; Suh, Alexander; McCauley, Alexander J.; Kaur, Parwinder; Dudchenko, Olga; Aiden, Erez; Fedrigo, Olivier; Formenti, Giulio; Mountcastle, Jacquelyn; Chow, William; Martin, Fergal J.; Ogeh, Denye N.; Thiaud-Nissen, Francoise; Howe, Kerstin; Tracey, Alan; Smith, Jacqueline; Kuo, Richard I.; Renfree, Marilyn B.; Kimura, Takashi; Sakoda, Yoshihiro; McDougall, Mathew; Spencer, Hamish G.; Pyne, Michael; Tolf, Conny; Waldenstroem, Jonas; Jarvis, Erich D.; Baker, Michelle L.; Burt, David W.; Short, Kirsty R.ShareSaveGENCODE: reference annotation for the human and mouse genomes in 2023NUCLEIC ACIDS RESEARCH2022-11-2489OAAIFrankish, Adam; Carbonell-Sala, Silvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E.; Mudge, Jonathan M.; Sisu, Cristina; Wright, James C.; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdan-Velez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; Dursun, Cagatay; Fatima, Reham; Giorgetti, Stefano; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Hardy, Matthew; Harrison, Peter W.; Hourlier, Thibaut; Hollis, Zoe; Hunt, Toby; James, Benjamin; Jiang, Yunzhe; Johnson, Rory; Kay, Mike; Lagarde, Julien; Martin, Fergal J.; Gomez, Laura Martinez; Nair, Surag; Ni, Pengyu; Pozo, Fernando; Ramalingam, Vivek; Ruffier, Magali; Schmitt, Bianca M.; Schreiber, Jacob M.; Steed, Emily; Suner, Marie-Marthe; Sumathipala, Dulika; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wass, Elizabeth; Yang, Yucheng T.; Yates, Andrew; Zafrulla, Zahoor; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Kundaje, Anshul; Paten, Benedict; Tress, Michael L.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2022-11-2489OAAIFrankish, Adam; Carbonell-Sala, Silvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E.; Mudge, Jonathan M.; Sisu, Cristina; Wright, James C.; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdan-Velez, Daniel; Cunningham, Fiona; Davidson, Claire; Donaldson, Sarah; Dursun, Cagatay; Fatima, Reham; Giorgetti, Stefano; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Hardy, Matthew; Harrison, Peter W.; Hourlier, Thibaut; Hollis, Zoe; Hunt, Toby; James, Benjamin; Jiang, Yunzhe; Johnson, Rory; Kay, Mike; Lagarde, Julien; Martin, Fergal J.; Gomez, Laura Martinez; Nair, Surag; Ni, Pengyu; Pozo, Fernando; Ramalingam, Vivek; Ruffier, Magali; Schmitt, Bianca M.; Schreiber, Jacob M.; Steed, Emily; Suner, Marie-Marthe; Sumathipala, Dulika; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Wass, Elizabeth; Yang, Yucheng T.; Yates, Andrew; Zafrulla, Zahoor; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Kundaje, Anshul; Paten, Benedict; Tress, Michael L.; Flicek, PaulShareSaveEnsembl 2023NUCLEIC ACIDS RESEARCH2022-11-01378OAAIMartin, Fergal J.; Amode, M. Ridwan; Aneja, Alisha; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Bignell, Alexandra; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Charkhchi, Mehrnaz; Cockburn, Alexander; Fiorretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Guijarro, Cristi; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Marques-Coelho, Diego; Marugan, Jose Carlos; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraiva-Agostinho, Nuno; Schuilenburg, Helen; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Stark, William; Steed, Emily; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Szpak, Michal; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Tate, John; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Ruffier, Magali; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Howe, Kevin L.; Harrison, Peter W.; Yates, Andrew D.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2022-11-01378OAAIMartin, Fergal J.; Amode, M. Ridwan; Aneja, Alisha; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Bignell, Alexandra; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Charkhchi, Mehrnaz; Cockburn, Alexander; Fiorretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Guijarro, Cristi; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Marques-Coelho, Diego; Marugan, Jose Carlos; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraiva-Agostinho, Nuno; Schuilenburg, Helen; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Stark, William; Steed, Emily; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Szpak, Michal; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Tate, John; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Ruffier, Magali; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Howe, Kevin L.; Harrison, Peter W.; Yates, Andrew D.; Flicek, PaulShareSaveGaur genome reveals expansion of sperm odorant receptors in domesticated cattleBMC GENOMICS2022-05-046OAAILow, Wai Yee; Rosen, Benjamin D.; Ren, Yan; Bickhart, Derek M.; To, Thu-Hien; Martin, Fergal J.; Billis, Konstantinos; Sonstegard, Tad S.; Sullivan, Shawn T.; Hiendleder, Stefan; Williams, John L.; Heaton, Michael P.; Smith, Timothy P. L.
BMC GENOMICSIF3.7
2022-05-046OAAILow, Wai Yee; Rosen, Benjamin D.; Ren, Yan; Bickhart, Derek M.; To, Thu-Hien; Martin, Fergal J.; Billis, Konstantinos; Sonstegard, Tad S.; Sullivan, Shawn T.; Hiendleder, Stefan; Williams, John L.; Heaton, Michael P.; Smith, Timothy P. L.ShareSaveEnsembl 2022NUCLEIC ACIDS RESEARCH2021-11-171.1KOAAICunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2021-11-171.1KOAAICunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, PaulShareSaveThree chromosome-level duck genome assemblies provide insights into genomic variation during domesticationNATURE COMMUNICATIONS2021-10-1141OAAIZhu, Feng; Yin, Zhong-Tao; Wang, Zheng; Smith, Jacqueline; Zhang, Fan; Martin, Fergal; Ogeh, Denye; Hincke, Maxwell; Lin, Fang-Bing; Burt, David W.; Zhou, Zheng-Kui; Hou, Shui-Sheng; Zhao, Qiang-Sen; Li, Xiao-Qin; Ding, Si-Ran; Li, Guan-Sheng; Yang, Fang-Xi; Hao, Jing-Pin; Zhang, Ziding; Lu, Li-Zhi; Yang, Ning; Hou, Zhuo-Cheng
NATURE COMMUNICATIONSIF15.7
2021-10-1141OAAIZhu, Feng; Yin, Zhong-Tao; Wang, Zheng; Smith, Jacqueline; Zhang, Fan; Martin, Fergal; Ogeh, Denye; Hincke, Maxwell; Lin, Fang-Bing; Burt, David W.; Zhou, Zheng-Kui; Hou, Shui-Sheng; Zhao, Qiang-Sen; Li, Xiao-Qin; Ding, Si-Ran; Li, Guan-Sheng; Yang, Fang-Xi; Hao, Jing-Pin; Zhang, Ziding; Lu, Li-Zhi; Yang, Ning; Hou, Zhuo-ChengShareSaveThe Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 dataNUCLEIC ACIDS RESEARCH2021-10-118OAAIDe Silva, Nishadi H.; Bhai, Jyothish; Chakiachvili, Marc; Contreras-Moreira, Bruno; Cummins, Carla; Frankish, Adam; Gall, Astrid; Genez, Thiago; Howe, Kevin L.; Hunt, Sarah E.; Martin, Fergal J.; Moore, Benjamin; Ogeh, Denye; Parker, Anne; Parton, Andrew; Ruffier, Magali; Sakthivel, Manoj Pandian; Sheppard, Dan; Tate, John; Thormann, Anja; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Zerbino, Daniel R.; Finn, Robert D.; Flicek, Paul; Yates, Andrew D.
NUCLEIC ACIDS RESEARCHIF13.1
2021-10-118OAAIDe Silva, Nishadi H.; Bhai, Jyothish; Chakiachvili, Marc; Contreras-Moreira, Bruno; Cummins, Carla; Frankish, Adam; Gall, Astrid; Genez, Thiago; Howe, Kevin L.; Hunt, Sarah E.; Martin, Fergal J.; Moore, Benjamin; Ogeh, Denye; Parker, Anne; Parton, Andrew; Ruffier, Magali; Sakthivel, Manoj Pandian; Sheppard, Dan; Tate, John; Thormann, Anja; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Zerbino, Daniel R.; Finn, Robert D.; Flicek, Paul; Yates, Andrew D.ShareSavePopulation genomics of the critically endangered kakapo2021-10-01107OAAIDussex, Nicolas; van der Valk, Tom; Morales, Hernan E.; Wheat, Christopher W.; Diez-del-Molino, David; von Seth, Johanna; Foster, Yasmin; Kutschera, Verena E.; Guschanski, Katerina; Rhie, Arang; Phillippy, Adam M.; Korlach, Jonas; Howe, Kerstin; Chow, William; Pelan, Sarah; Damas, Joanna D. Mendes; Lewin, Harris A.; Hastie, Alex R.; Formenti, Giulio; Fedrigo, Olivier; Guhlin, Joseph; Harrop, Thomas W. R.; Lec, Marissa F. Le; Dearden, Peter K.; Haggerty, Leanne; Martin, Fergal J.; Kodali, Vamsi; Thibaud-Nissen, Francoise; Iorns, David; Knapp, Michael; Gemmell, Neil J.; Robertson, Fiona; Moorhouse, Ron; Digby, Andrew; Eason, Daryl; Vercoe, Deidre; Howard, Jason; Jarvis, Erich D.; Robertson, Bruce C.; Dalen, Love
2021-10-01107OAAIDussex, Nicolas; van der Valk, Tom; Morales, Hernan E.; Wheat, Christopher W.; Diez-del-Molino, David; von Seth, Johanna; Foster, Yasmin; Kutschera, Verena E.; Guschanski, Katerina; Rhie, Arang; Phillippy, Adam M.; Korlach, Jonas; Howe, Kerstin; Chow, William; Pelan, Sarah; Damas, Joanna D. Mendes; Lewin, Harris A.; Hastie, Alex R.; Formenti, Giulio; Fedrigo, Olivier; Guhlin, Joseph; Harrop, Thomas W. R.; Lec, Marissa F. Le; Dearden, Peter K.; Haggerty, Leanne; Martin, Fergal J.; Kodali, Vamsi; Thibaud-Nissen, Francoise; Iorns, David; Knapp, Michael; Gemmell, Neil J.; Robertson, Fiona; Moorhouse, Ron; Digby, Andrew; Eason, Daryl; Vercoe, Deidre; Howard, Jason; Jarvis, Erich D.; Robertson, Bruce C.; Dalen, LoveShareSaveLINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regionsGENOME BIOLOGY2021-02-1846OAAIRoller, Masa; Stamper, Ericca; Villar, Diego; Izuogu, Osagie; Martin, Fergal; Redmond, Aisling M.; Ramachanderan, Raghavendra; Harewood, Louise; Odom, Duncan T.; Flicek, Paul
GENOME BIOLOGYIF9.4
2021-02-1846OAAIRoller, Masa; Stamper, Ericca; Villar, Diego; Izuogu, Osagie; Martin, Fergal; Redmond, Aisling M.; Ramachanderan, Raghavendra; Harewood, Louise; Odom, Duncan T.; Flicek, PaulShareSaveResearch Directions
No research directions