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I

Indrajit Deb

university of michigan system

11H-index
56Paper Count
325Citation Count
Published Papers 12
Publication Date
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N1-Methylpseudouridine and pseudouridine modifications modulate mRNA decoding during translation
errNATURE COMMUNICATIONS
IF15.7
err2024-09-16
err0
errOAAI
errMonroe, Jeremy; Eyler, Daniel E.; Mitchell, Lili; Deb, Indrajit; Bojanowski, Abigail; Srinivas, Pooja; Dunham, Christine M.; Roy, Bijoyita; Frank, Aaron T.; Koutmou, Kristin S.
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How Robust Is the Ligand Binding Transition State?
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2023-11-09
err0
errOAAI
errBose, Samik; Lotz, Samuel D.; Deb, Indrajit; Shuck, Megan; Lee, Kin Sing Stephen; Dickson, Alex
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errSave
Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand
errNATURE STRUCTURAL & MOLECULAR BIOLOGY
IF10.1
err2023-06-01
err15
errOAAI
errChauvier, Adrien; Porta, Jason C. C.; Deb, Indrajit; Ellinger, Emily; Meze, Katarina; Frank, Aaron T. T.; Ohi, Melanie D. D.; Walter, Nils G. G.
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errSave
Bell-Evans model and steered molecular dynamics in uncovering the dissociation kinetics of ligands targeting G-protein-coupled receptors
errSCIENTIFIC REPORTS
IF3.9
err2022-09-24
err6
errOAAI
errAkhunzada, Muhammad Jan; Yoon, Hyun Jung; Deb, Indrajit; Braka, Abdennour; Wu, Sangwook
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errSave
Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives
errJOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
IF3.1
err2022-03-26
err4
errOAAI
errDutta, Nivedita; Deb, Indrajit; Sarzynska, Joanna; Lahiri, Ansuman
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errSave
Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA
errPROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
IF4.5
err2022-03-01
err16
PREAI
errDutta, Nivedita; Deb, Indrajit; Sarzynska, Joanna; Lahiri, Ansuman
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errSave
Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair
errSCIENTIFIC REPORTS
IF3.9
err2019-11-07
err31
errOAAI
errDeb, Indrajit; Popenda, Lukasz; Sarzynska, Joanna; Malgowska, Magdalena; Lahiri, Ansuman; Gdaniec, Zofia; Kierzek, Ryszard
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Accelerating Rare Dissociative Processes in Biomolecules Using Selectively Scaled MD Simulations
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2019-09-11
err31
PREAI
errDeb, Indrajit; Frank, Aaron T.
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errSave
Structural Stability of the Anticodon Stem Loop Domains of the Unmodified Yeast and Escherichia coli tRNAPhe: Differing Views from Different Force Fields
errACS OMEGA
IF4.3
err2019-02-12
err1
errOAAI
errDeb, Indrajit; Sarzynska, Joanna; Nilsson, Lennart; Lahiri, Ansuman
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errSave
Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2016-03-30
err9
PREAI
errDeb, Indrajit; Pal, Rupak; Sarzynska, Joanna; Lahiri, Ansuman
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errSave
Rapid Communication Capturing the Destabilizing Effect of Dihydrouridine Through Molecular Simulations
errBIOPOLYMERS
IF3.2
err2014-07-23
err4
PREAI
errDeb, Indrajit; Sarzynska, Joanna; Nilsson, Lennart; Lahiri, Ansuman
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errSave
Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2014-04-03
err16
PREAI
errDeb, Indrajit; Sarzynska, Joanna; Nilsson, Lennart; Lahiri, Ansuman
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
N
Nils G. Walter
H-index: 63 · Papers: 387
L
Lennart Nilsson
H-index: 59 · Papers: 289
R
Ryszard Kierzek
H-index: 51 · Papers: 223
K
Kin Sing Stephen Lee
H-index: 32 · Papers: 118
M
Melanie D. Ohi
H-index: 32 · Papers: 126
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