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J

José Luis Ambite

university of southern california

39H-index
221Paper Count
6.1KCitation Count
Published Papers 30
Publication Date
Comparison of RETFound and a Supervised Convolutional Neural Network for Detection of Referable Glaucoma from Fundus Photographs
err2025-11-12
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errKyle Bolo; Tran Huy Nguyen; Sreenidhi Iyengar; Zhiwei Li; Van Nguyen; Brandon J. Wong; Jiun L. Do; Jose-Luis Ambite; Carl Kesselman; Lauren P. Daskivich; Benjamin Y. Xu
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Junhui Lee, MD,1 Kent Nguyen, OD,1 Brandon J. Wong, MD,1,3 Jose-Luis Ambite, PhD,2 Carl Kesselman, PhD,2 Lauren P. Daskivich, MD,1,5 Michael Pazzani, PhD,2 Benjamin Y. Xu, MD, PhD1
err2025-02-01
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errNguyen, Van; Iyengar, Sreenidhi; Rasheed, Haroon; Apolo, Galo; Li, Zhiwei; Kumar, Aniket; Nguyen, Hong; Bohner, Austin; Bolo, Kyle; Dhodapkar, Rahul; Do, Jiun; Duong, Andrew T.; Gluckstein, Jeffrey; Hong, Kendra; Humayun, Lucas L.; James, Alanna; Lee, Junhui; Nguyen, Kent; Wong, Brandon J.; Ambite, Jose-Luis; Kesselman, Carl; Daskivich, Lauren P.; Pazzani, Michael
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A federated learning architecture for secure and private neuroimaging analysis
err2024-08-01
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errStripelis, Dimitris; Gupta, Umang; Saleem, Hamza; Dhinagar, Nikhil; Ghai, Tanmay; Anastasiou, Chrysovalantis; Sanchez, Rafael; Steeg, Greg Ver; Ravi, Srivatsan; Naveed, Muhammad; Thompson, Paul M.; Ambite, Jose Luis
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Comparison of deep learning architectures for predicting amyloid positivity in Alzheimer's disease, mild cognitive impairment, and healthy aging, from T1-weighted brain structural MRI
err2024-07-02
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errChattopadhyay, Tamoghna; Ozarkar, Saket S.; Buwa, Ketaki; Joshy, Neha Ann; Komandur, Dheeraj; Naik, Jayati; Thomopoulos, Sophia I.; Ver Steeg, Greg; Ambite, Jose Luis; Thompson, Paul M.
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q-Diffusion leverages the full dimensionality of gene coexpression in single-cell transcriptomics
err2024-04-02
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errMarmarelis, Myrl G.; Littman, Russell; Battaglin, Francesca; Niedzwiecki, Donna; Venook, Alan; Ambite, Jose-Luis; Galstyan, Aram; Lenz, Heinz-Josef; Ver Steeg, Greg
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Predicted gene expression in ancestrally diverse populations leads to discovery of susceptibility loci for lifestyle and cardiometabolic traits
err2022-04-01
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errHighland, Heather M.; Wojcik, Genevieve L.; Graff, Mariaelisa; Nishimura, Katherine K.; Hodonsky, Chani J.; Baldassari, Antoine R.; Cote, Alanna C.; Cheng, Iona; Gignoux, Christopher R.; Tao, Ran; Li, Yuqing; Boerwinkle, Eric; Fornage, Myriam; Haessler, Jeffrey; Hindorff, Lucia A.; Hu, Yao; Justice, Anne E.; Lin, Bridget M.; Lin, Danyu; Stram, Daniel O.; Haiman, Christopher A.; Kooperberg, Charles; Le Marchand, Loic; Matise, Tara C.; Kenny, Eimear E.; Carlson, Christopher S.; Stahl, Eli A.; Avery, Christy L.; North, Kari E.; Ambite, Jose Luis; Buyske, Steven; Loos, Ruth J.; Peters, Ulrike; Young, Kristin L.; Bien, Stephanie A.; Huckins, Laura M.
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Using dynamic time warping self-organizing maps to characterize diurnal patterns in environmental exposures
err2021-12-15
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errLi, Kenan; Sward, Katherine; Deng, Huiyu; Morrison, John; Habre, Rima; Franklin, Meredith; Chiang, Yao-Yi; Ambite, Jose Luis; Wilson, John P.; Eckel, Sandrah P.
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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding
err2021-10-20
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errWang, Kanix; Stevens, Robert; Alachram, Halima; Li, Yu; Soldatova, Larisa; King, Ross; Ananiadou, Sophia; Schoene, Annika M.; Li, Maolin; Christopoulou, Fenia; Ambite, Jose Luis; Matthew, Joel; Garg, Sahil; Hermjakob, Ulf; Marcu, Daniel; Sheng, Emily; Beissbarth, Tim; Wingender, Edgar; Galstyan, Aram; Gao, Xin; Chambers, Brendan; Pan, Weidi; Khomtchouk, Bohdan B.; Evans, James A.; Rzhetsky, Andrey
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W-TSS: A Wavelet-Based Algorithm for Discovering Time Series Shapelets
errSENSORS
IF3.5
err2021-08-28
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errLi, Kenan; Deng, Huiyu; Morrison, John; Habre, Rima; Franklin, Meredith; Chiang, Yao-Yi; Sward, Katherine; Gilliland, Frank D.; Ambite, Jose Luis; Eckel, Sandrah P.
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Rapid detection of identity-by-descent tracts for mega-scale datasets
err2021-06-10
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errShemirani, Ruhollah; Belbin, Gillian M.; Avery, Christy L.; Kenny, Eimear E.; Gignoux, Christopher R.; Ambite, Jose Luis
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BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science
err2021-01-01
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errAmbite, Jose Luis; Fierro, Lily; Gordon, Jonathan; Burns, Gully A. P. C.; Geigl, Florian; Lerman, Kristina; Van Horn, John D.
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ENHANCING ACCESS TO DATA AT THE NATIONAL INSTITUTE OF HEALTH REPOSITORY AND GENOMICS RESOURCE
err2019-10-01
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PREAI
errRuocco, Brittany; Mayani, Rajiv; Sharma, Shefali; Wilson, Sherri; Vahi, Karan; Voinea, Serban; Davis, Gillian; Valentine-Cooper, William; Mathew, Joel; Arens, Yigal; Deelman, Ewa; Azaro, Marco; Vieland, Veronica; Ambite, Jose Luis; Brzustowicz, Linda
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Applying Multivariate Segmentation Methods to Human Activity Recognition From Wearable Sensors' Data
err2019-02-07
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errLi, Kenan; Habre, Rima; Deng, Huiyu; Morrison, John; Gilliland, Frank D.; Ambite, Jose Luis; Stripelis, Dimitris; Chiang, Yao-Yi; Lin, Yijun; Bui, Alex A. T.; King, Christine; Hosseini, Anahita; Van Vliet, Eleanne; Sarrafzadeh, Majid; Eckel, Sandrah P.
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Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study
err2018-06-05
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errKocarnik, Jonathan M.; Richard, Melissa; Graff, Misa; Haessler, Jeffrey; Bien, Stephanie; Carlson, Chris; Carty, Cara L.; Reiner, Alexander P.; Avery, Christy L.; Ballantyne, Christie M.; LaCroix, Andrea Z.; Assimes, Themistocles L.; Barbalic, Maja; Pankratz, Nathan; Tang, Weihong; Tao, Ran; Chen, Dongquan; Talavera, Gregory A.; Daviglus, Martha L.; Chirinos-Medina, Diana A.; Pereira, Rocio; Nishimura, Katie; Buzkova, Petra; Best, Lyle G.; Ambite, Jose Luis; Cheng, Iona; Crawford, Dana C.; Hindorff, Lucia A.; Fornage, Myriam; Heiss, Gerardo; North, Kari E.; Haiman, Christopher A.; Peters, Ulrike; Le Marchand, Loic; Kooperberg, Charles
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Fine-mapping of lipid regions in global populations discovers ethnic-specific signals and refines previously identified lipid loci
err2016-11-25
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errZubair, Niha; Graff, Mariaelisa; Ambite, Jose Luis; Bush, William S.; Kichaev, Gleb; Lu, Yingchang; Manichaikul, Ani; Sheu, Wayne H-H.; Absher, Devin; Assimes, Themistocles L.; Bielinski, Suzette J.; Bottinger, Erwin P.; Buzkova, Petra; Chuang, Lee-Ming; Chung, Ren-Hua; Cochran, Barbara; Dumitrescu, Logan; Gottesman, Omri; Haessler, Jeffrey W.; Haiman, Christopher; Heiss, Gerardo; Hsiung, Chao A.; Hung, Yi-Jen; Hwu, Chii-Min; Juang, Jyh-Ming J.; Le Marchand, Loic; Lee, I-Te; Lee, Wen-Jane; Lin, Li-An; Lin, Danyu; Lin, Shih-Yi; Mackey, Rachel H.; Martin, Lisa W.; Pasaniuc, Bogdan; Peters, Ulrike; Predazzi, Irene; Quertermous, Thomas; Reiner, Alex P.; Robinson, Jennifer; Rotter, Jerome I.; Ryckman, Kelli K.; Schreiner, Pamela J.; Stahl, Eli; Tao, Ran; Tsai, Michael Y.; Waite, Lindsay L.; Wang, Tzung-Dau; Buyske, Steven; Chen, Yii-Der Ida; Cheng, Iona; Crawford, Dana C.; Loos, Ruth J. F.; Rich, Stephen S.; Fornage, Myriam; North, Kari E.; Kooperberg, Charles; Carty, Cara L.
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Replication of Associations between GWAS SNPs and Melanoma Risk in the Population Architecture Using Genomics and Epidemiology (PAGE) Study (vol 134, pg 2049, 2014)
err2014-11-01
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errKocarnik, Jonathan M.; Park, Sungshim Lani; Han, Jiali; Dumitrescu, Logan; Cheng, Iona; Wilkens, Lynne R.; Schumacher, Fredrick R.; Kolonel, Laurence; Carlson, Chris S.; Crawford, Dana C.; Goodloe, Robert J.; Dilks, Holli; Baker, Paxton; Richardson, Danielle; Ambite, Jose Luis; Song, Fengju; Qureshi, Abrar A.; Zhang, Mingfeng; Duggan, David; Hutter, Carolyn; Hindorff, Lucia A.; Bush, William S.; Kooperberg, Charles; Le Marchand, Loic; Peters, Ulrike
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Pleiotropy analysis identifies a novel prostate cancer variant at 6p21.33: The PAGE, PRACTICAL, and BPC3 Consortia
err2014-10-01
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PREAI
errHan, Ying; Love, Shelly-Ann; Bush, William S.; Campa, Daniele; Butler, Anne M.; Dumitrescu, Logan; Tsilidis, Konstantinos; Cheng, Iona; Wilkens, Lynne R.; Fowke, Jay H.; Ambite, Jose Luis; Buyske, Steve; Park, S. Lani; Haiman, Christopher A.; Marchand, Loic L.; Hindorff, Lucia A.; Canzian, Federico; Schumacher, Fredrick R.
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A Novel Multi-Institutional Database for Tracking and Reporting Dose-Volume Data and Normal Tissue Effects
err2014-09-01
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errSimpson, D. R.; Ambite, J. L.; Kosztyla, R.; Kumaraguruparan, G.; Liu, M.; Moore, K. L.; Murphy, J. D.; Wu, J.; Moiseenko, V.
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Replication of Associations between GWAS SNPs and Melanoma Risk in the Population Architecture Using Genomics and Epidemiology (PAGE) Study
err2014-07-01
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errKocarnik, Jonathan M.; Park, Sungshim Lani; Han, Jiali; Dumitrescu, Logan; Cheng, Iona; Wilkens, Lynne R.; Schumacher, Fredrick R.; Kolonel, Laurence; Carlson, Chris S.; Crawford, Dana C.; Goodloe, Robert J.; Dilks, Holli; Baker, Paxton; Richardson, Danielle; Ambite, Jose Luis; Song, Fengju; Quresh, Abrar A.; Zhang, Mingfeng; Duggan, David; Hutter, Carolyn; Hindorff, Lucia A.; Bush, William S.; Kooperberg, Charles; Le Marchand, Loic; Peters, Ulrike
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