Not logged inDNA reference reagents isolate biases in microbiome profiling: a global multi-lab study
Anwar, Saba; Lamaudiere, Matthew; Hassall, Jack; Dehinsilu, Jacob; Bhuller, Ravneet K.; Hold, Georgina L.; Vazquez-Campos, Xabier; Mahnert, Alexander; Moissl-Eichinger, Christine; Galle, Birgit; Kainz, Gudrun; Pjevac, Petra; Hausmann, Bela; Schwarz, Jasmin; Kohl, Gudrun; Berry, David; Vancuren, Sarah J.; Allen-Vercoe, Emma; Nielsen, Nynne; Sorensen, Nikolaj; Eklund, Aron; Nielsen, Henrik Bjorn; Riedel, Rene; Krause, Jannike Lea; Chang, Hyun-Dong; Park, Suenie; Song, Ho-Yeon; Seo, Hoonhee; ul-Haq, Asad; Kim, Sukyung; Kwon, Yongbin; Park, Sunwha; Soberon, Xavier; Silva-Herzog, Eugenia; Verlouw, Joost A. M.; Arp, Pascal; Jhamai, Mila; Kraaij, Robert; Geelen, Anoecim R.; Ducarmon, Quinten R.; Smits, Wiep Klaas; Kuijper, Ed J.; Zwittink, Romy D.; van Best, Niels; Penders, John; Le, Giang; Driessen, Christel; Kool, Jolanda; Shetty, Sudarshan A.; Fuentes, Susana; Demirci, Mehmet; Yigin, Akin; Whalley, Celina; Beggs, Andrew D.; Quince, Christopher; James, Rob; Raguideau, Sebastien; Gordon, Martin; Mate, Ryan; Fritzsche, Martin; Danckert, Nathan P.; Blanco, Jesus Miguens; Marchesi, Julian R.; Rauch, Marcus; Williamson, R. Anthony; van't Wout, Angelique B.; Kritz, Angelika; Rosecker, Stephan; Stevens, Richard; Laws, Lynette; Sayavedra, Lizbeth; Romano, Stefano; Telatin, Andrea; Baker, David; Narbad, Arjan; Servetas, Stephanie L.; Kralj, Jason G.; Forry, Samuel P.; Hunter, Monique E.; Dootz, Jennifer N.; Jackson, Scott A.; Mason, Christopher E.; Butler, Daniel J.; Mozsary, Christopher; Foox, Jonathan; Damle, Namita; Resh, Aidan; Busswitz, Amanda; Lenz, Peter; Sontag, Shane; Cross, Andrew; Sanchez, Christian; Guo, Mingsheng; Olson, Kayla; Smith, Eric A.; La Reau, Alex J.; Ward, Tonya; Kuersten, Scott; Hyde, Fred; Khrebtukova, Irina; Schroth, Gary; Rijpkema, Sjoerd; Amos, Gregory C. A.; Sergaki, Chrysi .png)
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SaveBlood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profilingAnckaert, Jasper; Cobos, Francisco Avila; Decock, Anneleen; Decruyenaere, Philippe; Deleu, Jill; De Preter, Katleen; De Wever, Olivier; De Wilde, Jilke; Dhondt, Bert; D'huyvetter, Thibaut; Everaert, Celine; Fierro, Carolina; Helsmoortel, Hetty H.; Hendrix, An; Hulstaert, Eva; Koster, Jan; Kuersten, Scott; Mercer, Tim R.; Mestdagh, Pieter; Morlion, Annelien; Nijs, Nele; Nuytens, Justine; Philippron, Annouck; Piofczyk, Thomas; Poma-Soto, Franco; Schoofs, Kathleen; Schroth, Gary P.; Thas, Olivier; Vanden Eynde, Eveline; Vandesompele, Jo; Van Maerken, Tom; Van Paemel, Ruben; Verniers, Kimberly; Verwilt, Jasper; Yigit, Nurten Share Save Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomesTan, Asako; Murugapiran, Senthil; Mikalauskas, Alaya; Koble, Jeff; Kennedy, Drew; Hyde, Fred; Ruotti, Victor; Law, Emily; Jensen, Jordan; Schroth, Gary P.; Macklaim, Jean M.; Kuersten, Scott; LeFrancois, Brice; Gohl, Daryl M. Share Save Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metricsDhondt, Bert; Pinheiro, Claudio; Geeurickx, Edward; Tulkens, Joeri; Vergauwen, Glenn; van der Pol, Edwin; Nieuwland, Rienk; Decock, Anneleen; Miinalainen, Ilkka; Rappu, Pekka; Schroth, Gary; Kuersten, Scott; Vandesompele, Jo; Mestdagh, Pieter; Lumen, Nicolaas; De Wever, Olivier; Hendrix, An Share Save Share Save Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategyParikh, Victoria N.; Ioannidis, Alexander G.; Jimenez-Morales, David; Gorzynski, John E.; De Jong, Hannah N.; Liu, Xiran; Roque, Jonasel; Cepeda-Espinoza, Victoria P.; Osoegawa, Kazutoyo; Hughes, Chris; Sutton, Shirley C.; Youlton, Nathan; Joshi, Ruchi; Amar, David; Tanigawa, Yosuke; Russo, Douglas; Wong, Justin; Lauzon, Jessie T.; Edelson, Jacob; Montserrat, Daniel Mas; Kwon, Yongchan; Rubinacci, Simone; Delaneau, Olivier; Cappello, Lorenzo; Kim, Jaehee; Shoura, Massa J.; Raja, Archana N.; Watson, Nathaniel; Hammond, Nathan; Spiteri, Elizabeth; Mallempati, Kalyan C.; Montero-Martin, Gonzalo; Christle, Jeffrey; Kim, Jennifer; Kirillova, Anna; Seo, Kinya; Huang, Yong; Zhao, Chunli; Moreno-Grau, Sonia; Hershman, Steven G.; Dalton, Karen P.; Zhen, Jimmy; Kamm, Jack; Bhatt, Karan D.; Isakova, Alina; Morri, Maurizio; Ranganath, Thanmayi; Blish, Catherine A.; Rogers, Angela J.; Nadeau, Kari; Yang, Samuel; Blomkalns, Andra; O'Hara, Ruth; Neff, Norma F.; DeBoever, Christopher; Szalma, Sandor; Wheeler, Matthew T.; Gates, Christian M.; Farh, Kyle; Schroth, Gary P.; Febbo, Phil; DeSouza, Francis; Cornejo, Omar E.; Fernandez-Vina, Marcelo; Kistler, Amy; Palacios, Julia A.; Pinsky, Benjamin A.; Bustamante, Carlos D.; Rivas, Manuel A.; Ashley, Euan A. Share Save Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's diseaseCaldwell, Andrew B.; Liu, Qing; Zhang, Can; Schroth, Gary P.; Galasko, Douglas R.; Rynearson, Kevin D.; Tanzi, Rudolph E.; Yuan, Shauna H.; Wagner, Steven L.; Subramaniam, Shankar Share Save Assessing reproducibility of inherited variants detected with short-read whole genome sequencingPan, Bohu; Ren, Luyao; Onuchic, Vitor; Guan, Meijian; Kusko, Rebecca; Bruinsma, Steve; Trigg, Len; Scherer, Andreas; Ning, Baitang; Zhang, Chaoyang; Glidewell-Kenney, Christine; Xiao, Chunlin; Donaldson, Eric; Sedlazeck, Fritz J.; Schroth, Gary; Yavas, Gokhan; Grunenwald, Haiying; Chen, Haodong; Meinholz, Heather; Meehan, Joe; Wang, Jing; Yang, Jingcheng; Foox, Jonathan; Shang, Jun; Miclaus, Kelci; Dong, Lianhua; Shi, Leming; Mohiyuddin, Marghoob; Pirooznia, Mehdi; Gong, Ping; Golshani, Rooz; Wolfinger, Russ; Lababidi, Samir; Sahraeian, Sayed Mohammad Ebrahim; Sherry, Steve; Han, Tao; Chen, Tao; Shi, Tieliu; Hou, Wanwan; Ge, Weigong; Zou, Wen; Guo, Wenjing; Bao, Wenjun; Xiao, Wenzhong; Fan, Xiaohui; Gondo, Yoichi; Yu, Ying; Zhao, Yongmei; Su, Zhenqiang; Liu, Zhichao; Tong, Weida; Xiao, Wenming; Zook, Justin M.; Zheng, Yuanting; Hong, Huixiao Share Save High-Throughput Next-Generation Sequencing Respiratory Viral Panel: A Diagnostic and Epidemiologic Tool for SARS-CoV-2 and Other VirusesSahajpal, Nikhil S.; Mondal, Ashis K.; Njau, Allan; Petty, Zachary; Chen, Jiani; Ananth, Sudha; Ahluwalia, Pankaj; Williams, Colin; Ross, Ted M.; Chaubey, Alka; DeSantis, Grace; Schroth, Gary P.; Bahl, Justin; Kolhe, Ravindra Share Save Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study (Sep, 10.1038/s41587-021-01049-5, 2021)Foox, Jonathan; Tighe, Scott W.; Nicolet, Charles M.; Zook, Justin M.; Byrska-Bishop, Marta; Clarke, Wayne E.; Khayat, Michael M.; Mahmoud, Medhat; Laaguiby, Phoebe K.; Herbert, Zachary T.; Warner, Derek; Grills, George S.; Jen, Jin; Levy, Shawn; Xiang, Jenny; Alonso, Alicia; Zhao, Xia; Zhang, Wenwei; Teng, Fei; Zhao, Yonggang; Lu, Haorong; Schroth, Gary P.; Narzisi, Giuseppe; Farmerie, William; Sedlazeck, Fritz J.; Baldwin, Don A.; Mason, Christopher E. Share Save Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencingXiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao, Yongmei; Lack, Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton, Ashley; Shen, Tsai-Wei; Talsania, Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty, Jyoti; Kriga, Yuliya; Raziuddin, Arati; Tran, Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Cu Nguyen; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick, V; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming Share Save Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencingFang, Li Tai; Zhu, Bin; Zhao, Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania, Keyur; Lack, Justin; Shen, Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran, Bao; Shetty, Jyoti; Kriga, Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta, Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick, V; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming Share Save Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing StudyFoox, Jonathan; Tighe, Scott W.; Nicolet, Charles M.; Zook, Justin M.; Byrska-Bishop, Marta; Clarke, Wayne E.; Khayat, Michael M.; Mahmoud, Medhat; Laaguiby, Phoebe K.; Herbert, Zachary T.; Warner, Derek; Grills, George S.; Jen, Jin; Levy, Shawn; Xiang, Jenny; Alonso, Alicia; Zhao, Xia; Zhang, Wenwei; Teng, Fei; Zhao, Yonggang; Lu, Haorong; Schroth, Gary P.; Narzisi, Giuseppe; Farmerie, William; Sedlazeck, Fritz J.; Baldwin, Don A.; Mason, Christopher E. Share Save The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021)Lorenzi, Lucia; Chiu, Hua-Sheng; Avila Cobos, Francisco; Gross, Stephen; Volders, Pieter-Jan; Cannoodt, Robrecht; Nuytens, Justine; Vanderheyden, Katrien; Anckaert, Jasper; Lefever, Steve; Tay, Aidan P.; de Bony, Eric J.; Trypsteen, Wim; Gysens, Fien; Vromman, Marieke; Goovaerts, Tine; Hansen, Thomas Birkballe; Kuersten, Scott; Nijs, Nele; Taghon, Tom; Vermaelen, Karim; Bracke, Ken R.; Saeys, Yvan; De Meyer, Tim; Deshpande, Nandan P.; Anande, Govardhan; Chen, Ting-Wen; Wilkins, Marc R.; Unnikrishnan, Ashwin; De Preter, Katleen; Kjems, Jorgen; Koster, Jan; Schroth, Gary P.; Vandesompele, Jo; Sumazin, Pavel; Mestdagh, Pieter Share Save The RNA Atlas expands the catalog of human non-coding RNAsLorenzi, Lucia; Chiu, Hua-Sheng; Avila Cobos, Francisco; Gross, Stephen; Volders, Pieter-Jan; Cannoodt, Robrecht; Nuytens, Justine; Vanderheyden, Katrien; Anckaert, Jasper; Lefever, Steve; Tay, Aidan P.; de Bony, Eric J.; Trypsteen, Wim; Gysens, Fien; Vromman, Marieke; Goovaerts, Tine; Hansen, Thomas Birkballe; Kuersten, Scott; Nijs, Nele; Taghon, Tom; Vermaelen, Karim; Bracke, Ken R.; Saeys, Yvan; De Meyer, Tim; Deshpande, Nandan P.; Anande, Govardhan; Chen, Ting-Wen; Wilkins, Marc R.; Unnikrishnan, Ashwin; De Preter, Katleen; Kjems, Jorgen; Koster, Jan; Schroth, Gary P.; Vandesompele, Jo; Sumazin, Pavel; Mestdagh, Pieter Share Save Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 VariantsCrits-Christoph, Alexander; Kantor, Rose S.; Olm, Matthew R.; Whitney, Oscar N.; Al-Shayeb, Basem; Lou, Yue Clare; Flamholz, Avi; Kennedy, Lauren C.; Greenwald, Hannah; Hinkle, Adrian; Hetzel, Jonathan; Spitzer, Sara; Koble, Jeffery; Tan, Asako; Hyde, Fred; Schroth, Gary; Kuersten, Scott; Banfield, Jillian F.; Nelson, Kara L. Share Save Charting Extracellular Transcriptomes in The Human Biofluid RNA AtlasHulstaert, Eva; Morlion, Annelien; Cobos, Francisco Avila; Verniers, Kimberly; Nuytens, Justine; Vanden Eynde, Eveline; Yigit, Nurten; Anckaert, Jasper; Geerts, Anja; Hindryckx, Pieter; Jacques, Peggy; Brusselle, Guy; Bracke, Ken R.; Maes, Tania; Malfait, Thomas; Derveaux, Thierry; Ninclaus, Virginie; Van Cauwenbergh, Caroline; Roelens, Kristien; Roets, Ellen; Hemelsoet, Dimitri; Tilleman, Kelly; Brochez, Lieve; Kuersten, Scott; Simon, Lukas M.; Karg, Sebastian; Kautzky-Willers, Alexandra; Leutner, Michael; Noehammer, Christa; Slaby, Ondrej; Prins, Romeo Willinge; Koster, Jan; Lefever, Steve; Schroth, Gary P.; Vandesompele, Jo; Mestdagh, Pieter Share Save Share Save Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discoveryLee, Bongyong; Mahmud, Iqbal; Marchica, John; Derezinski, Pawel; Qi, Feng; Wang, Fubo; Joshi, Piyush; Valerio, Felipe; Rivera, Inoel; Patel, Vipul; Pavlovich, Christian P.; Garrett, Timothy J.; Schroth, Gary P.; Sun, Yinghao; Perera, Ranjan J. Share Save Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells (vol 87, pg 123, 2012)Ramskold, Daniel; Luo, Shujun; Wang, Yu-Chieh; Li, Robin; Deng, Qiaolin; Faridani, Omid R.; Daniels, Gregory A.; Khrebtukova, Irina; Loring, Jeanne F.; Laurent, Louise C.; Schroth, Gary P.; Sandberg, Rickard Share Save 
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