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Miguél Vázquez

Barcelona Supercomputing Center

36H-index
227Paper Count
9.9KCitation Count
Published Papers 45
Publication Date
PredIG: an interpretable predictor of T-cell epitope immunogenicity
err2025-11-17
err0
errOAAI
errRoc Farriol-Duran; Christian Domínguez-Dalmases; Albert Cañellas-Solé; Miguel Vazquez; Eduard Porta-Pardo; Víctor Guallar
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Virus-like particle-mediated delivery of structure-selected neoantigens demonstrates immunogenicity and antitumoral activity in mice
err2024-01-03
err3
errOAAI
errBarajas, Ana; Amengual-Rigo, Pep; Pons-Grifols, Anna; Ortiz, Raquel; Carmona, Oriol Gracia; Urrea, Victor; de la Iglesia, Nuria; Blanco-Heredia, Juan; Anjos-Souza, Carla; Varela, Ismael; Trinite, Benjamin; Tarres-Freixas, Ferran; Rovirosa, Carla; Lepore, Rosalba; Vazquez, Miguel; de Mattos-Arruda, Leticia; Valencia, Alfonso; Clotet, Bonaventura; Aguilar-Gurrieri, Carmen; Guallar, Victor; Carrillo, Jorge; Blanco, Julia
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An online hepatitis C virus self-sampling strategy for gay, bisexual, and other men who have sex with men and trans women: TESTATE C PLUS 2020-2021
err2023-12-25
err3
PREAI
errMartinez-Riveros, Hector; Martro, Elisa; Montoro-Fernandez, Marcos; Diaz, Yesika; Muntada, Esteve; Romano-deGea, Pol; Moreno-Fornes, Sergio; Mora, Ruben; Villegas, Luis; Mena, Juan; Roqueta, Quim; Hernandez, Juanse; Vazquez, Miguel; Rius, Cristina; Roman, Francisca; Not, Anna; Muntane, Laura; Colom, Joan; Casabona, Jordi; Agusti, Cristina
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TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat
err2023-11-22
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errOAAI
errAcencio, Marcio L.; Vazquez, Miguel; Chawla, Konika; Laegreid, Astrid; Kuiper, Martin
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Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
err2023-10-16
err30
errOAAI
errMueller-Dott, Sophia; Tsirvouli, Eirini; Vazquez, Miguel; Flores, Ricardo O. Ramirez; Badia-i-Mompel, Pau; Fallegger, Robin; Tuerei, Denes; Laegreid, Astrid; Saez-Rodriguez, Julio
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Pathway and network analysis of more than 2500 whole cancer genomes (vol 11, 729, 2020)
err2022-12-08
err0
errOAAI
errReyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Sren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Jueri; Stuart, Joshua M.; Raphael, Benjamin J.
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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms
err2021-10-19
err49
errOAAI
errOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard
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Immune analysis of lymph nodes in relation to the presence or absence of tumor infiltrating lymphocytes in triple-negative breast cancer
err2021-05-01
err13
errOAAI
errQuintana, Angela; Peg, Vicente; Prat, Aleix; Moline, Teresa; Villacampa, Guillermo; Pare, Laia; Galvan, Patricia; Dientsmann, Rodrigo; Schmid, Peter; Curigliano, Giuseppe; Munoz-Couselo, Eva; Perez-Garcia, Jose; Marti, Merce; Blanco-Heredia, Juan; Dos Anjos, Carla; Vazquez, Miguel; De Mattos-Arruda, Leticia; Cortes, Javier
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Longitudinal whole-exome sequencing of cell-free DNA for tracking the co-evolutionary tumor and immune evasion dynamics: longitudinal data from a single patient
err2021-05-01
err4
errOAAI
errHastings, R. K.; Openshaw, M. R.; Vazquez, M.; Moreno-Cardenas, A. B.; Fernandez-Garcia, D.; Martinson, L.; Kulbicki, K.; Primrose, L.; Guttery, D. S.; Page, K.; Toghill, B.; Richards, C.; Thomas, A.; Tabernero, J.; Coombes, R. C.; Ahmed, S.; Toledo, R. A.; Shaw, J. A.
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Reiterative infusions of MSCs improve pediatric osteogenesis imperfecta eliciting a pro-osteogenic paracrine response: TERCELOI clinical trial
err2021-01-13
err33
errOAAI
errInfante, Arantza; Gener, Blanca; Vazquez, Miguel; Olivares, Nerea; Arrieta, Arantza; Grau, Gema; Llano, Isabel; Madero, Luis; Bueno, Ana Maria; Sagastizabal, Belen; Gerovska, Daniela; Arauzo-Bravo, Marcos J.; Astigarraga, Itziar; Rodriguez, Clara I.
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A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines
err2020-10-09
err10
errOAAI
errTsirvouli, Eirini; Toure, Vasundra; Niederdorfer, Barbara; Vazquez, Miguel; Flobak, Asmund; Kuiper, Martin
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Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group
err2020-08-01
err96
errOAAI
errDe Mattos-Arruda, L.; Vazquez, M.; Finotello, F.; Lepore, R.; Porta, E.; Hundal, J.; Amengual-Rigo, P.; Ng, C. K. Y.; Valencia, A.; Carrillo, J.; Chan, T. A.; Guallar, V.; McGranahan, N.; Blanco, J.; Griffith, M.
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Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction
err2020-07-28
err7
errOAAI
errNiederdorfer, Barbara; Toure, Vasundra; Vazquez, Miguel; Thommesen, Liv; Kuiper, Martin; Laegreid, Astrid; Flobak, Asmund
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A user guide for the online exploration and visualization of PCAWG data
err2020-07-07
err26
errOAAI
errGoldman, Mary J.; Zhang, Junjun; Fonseca, Nuno A.; Cortes-Ciriano, Isidro; Xiang, Qian; Craft, Brian; Pineiro-Yanez, Elena; O'Connor, Brian D.; Bazant, Wojciech; Barrera, Elisabet; Munoz-Pomer, Alfonso; Petryszak, Robert; Fuellgrabe, Anja; Al-Shahrour, Fatima; Keays, Maria; Haussler, David; Weinstein, John N.; Huber, Wolfgang; Valencia, Alfonso; Park, Peter J.; Papatheodorou, Irene; Zhu, Jingchun; Ferretti, Vincent; Vazquez, Miguel
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Immune analysis of lymph nodes in relation to the presence or absence of tumour infiltrating lymphocytes in triple negative breast cancers
err2020-05-01
err0
errOAAI
errQuintana, A.; Peg, V.; Moline, T.; Prat, A.; Pare, L.; Galvan, P.; Villacampa, G.; Dientsmann, R.; Perez, J.; Munoz, E.; Marti, M.; Blanco-Heredia, J.; Dos Anjos, C.; Vazquez, M.; de Mattos, L.; Cortes, J.
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Butler enables rapid cloud-based analysis of thousands of human genomes (vol 79, pg 134, 2019)
err2020-02-12
err0
errOAAI
errYakneen, Sergei; Waszak, Sebastian M.; Gertz, Michael; Korbel, Jan O.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Campbell, Peter J.; Chen, Zhaohong; Cho, Sunghoon; Choi, Wan; Clapham, Peter; Davis-Dusenbery, Brandi N.; De La Vega, Francisco M.; Demeulemeester, Jonas; Dow, Michelle T.; Dursi, Lewis Jonathan; Eils, Juergen; Eils, Roland; Ellrott, Kyle; Farcas, Claudiu; Favero, Francesco; Fayzullaev, Nodirjon; Ferretti, Vincent; Flicek, Paul; Fonseca, Nuno A.; Gelpi, Josep Ll.; Getz, Gad; Gibson, Bob; Grossman, Robert L.; Harismendy, Olivier; Heath, Allison P.; Heinold, Michael C.; Hess, Julian M.; Hofmann, Oliver; Hong, Jongwhi H.; Hudson, Thomas J.; Hutter, Barbara; Hutter, Carolyn M.; Hubschmann, Daniel; Imoto, Seiya; Ivkovic, Sinisa; Jeon, Seung-Hyup; Jiao, Wei; Jung, Jongsun; Kabbe, Rolf; Kahles, Andre; Kerssemakers, Jules N. A.; Kim, Hyung-Lae; Kim, Hyunghwan; Kim, Jihoon; Kim, Youngwook; Kleinheinz, Kortine; Koscher, Michael; Koures, Antonios; Kovacevic, Milena; Lawerenz, Chris; Leshchiner, Ignaty; Liu, Jia; Livitz, Dimitri; Mihaiescu, George L.; Mijalkovic, Sanja; Lazic, Ana Mijalkovic; Miyano, Satoru; Miyoshi, Naoki; Nahal-Bose, Hardeep K.; Nakagawa, Hidewaki; Nastic, Mia; Newhouse, Steven J.; Nicholson, Jonathan; O'Connor, Brian D.; Ocana, David; Ohi, Kazuhiro; Ohno-Machado, Lucila; Omberg, Larsson; Ouellette, B. F. Francis; Paramasivam, Nagarajan; Perry, Marc D.; Pihl, Todd D.; Prinz, Manuel; Puiggros, Montserrat; Radovic, Petar; Raine, Keiran M.; Rheinbay, Esther; Rosenberg, Mara; Royo, Romina; Ratsch, Gunnar; Saksena, Gordon; Schlesner, Matthias; Shorser, Solomon I.; Short, Charles; Sofia, Heidi J.; Spring, Jonathan; Stein, Lincoln D.; Struck, Adam J.; Tiao, Grace; Tijanic, Nebojsa; Torrents, David; Van Loo, Peter; Vazquez, Miguel; Vicente, David; Wala, Jeremiah A.; Wang, Zhining; Waszak, Sebastian M.; Weischenfeldt, Joachim; Werner, Johannes; Williams, Ashley; Woo, Youngchoon; Wright, Adam J.; Xiang, Qian; Yang, Liming; Yuen, Denis; Yung, Christina K.; Zhang, Junjun; Korbel, Jan O.
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Butler enables rapid cloud-based analysis of thousands of human genomes
err2020-02-05
err10
errOAAI
errYakneen, Sergei; Waszak, Sebastian M.; Gertz, Michael; Korbel, Jan O.; Aminou, Brice; Bartolome, Javier; Boroevich, Keith A.; Boyce, Rich; Brooks, Angela N.; Buchanan, Alex; Buchhalter, Ivo; Butler, Adam P.; Byrne, Niall J.; Cafferkey, Andy; Campbell, Peter J.; Chen, Zhaohong; Cho, Sunghoon; Choi, Wan; Clapham, Peter; Davis-Dusenbery, Brandi N.; De La Vega, Francisco M.; Demeulemeester, Jonas; Dow, Michelle T.; Dursi, Lewis Jonathan; Eils, Juergen; Eils, Roland; Ellrott, Kyle; Farcas, Claudiu; Favero, Francesco; Fayzullaev, Nodirjon; Ferretti, Vincent; Flicek, Paul; Fonseca, Nuno A.; Gelpi, Josep Ll; Getz, Gad; Gibson, Bob; Grossman, Robert L.; Harismendy, Olivier; Heath, Allison P.; Heinold, Michael C.; Hess, Julian M.; Hofmann, Oliver; Hong, Jongwhi H.; Hudson, Thomas J.; Hutter, Barbara; Hutter, Carolyn M.; Huebschmann, Daniel; Imoto, Seiya; Ivkovic, Sinisa; Jeon, Seung-Hyup; Jiao, Wei; Jung, Jongsun; Kabbe, Rolf; Kahles, Andre; Kerssemakers, Jules N. A.; Kim, Hyung-Lae; Kim, Hyunghwan; Kim, Jihoon; Kim, Youngwook; Kleinheinz, Kortine; Koscher, Michael; Koures, Antonios; Kovacevic, Milena; Lawerenz, Chris; Leshchiner, Ignaty; Liu, Jia; Livitz, Dimitri; Mihaiescu, George L.; Mijalkovic, Sanja; Lazic, Ana Mijalkovic; Miyano, Satoru; Miyoshi, Naoki; Nahal-Bose, Hardeep K.; Nakagawa, Hidewaki; Nastic, Mia; Newhouse, Steven J.; Nicholson, Jonathan; O'Connor, Brian D.; Ocana, David; Ohi, Kazuhiro; Ohno-Machado, Lucila; Omberg, Larsson; Ouellette, B. F. Francis; Paramasivam, Nagarajan; Perry, Marc D.; Pihl, Todd D.; Prinz, Manuel; Puiggros, Montserrat; Radovic, Petar; Raine, Keiran M.; Rheinbay, Esther; Rosenberg, Mara; Royo, Romina; Raetsch, Gunnar; Saksena, Gordon; Schlesner, Matthias; Shorser, Solomon, I; Short, Charles; Sofia, Heidi J.; Spring, Jonathan; Stein, Lincoln D.; Struck, Adam J.; Tiao, Grace; Tijanic, Nebojsa; Torrents, David; Van Loo, Peter; Vazquez, Miguel; Vicente, David; Wala, Jeremiah A.; Wang, Zhining; Weischenfeldt, Joachim; Werner, Johannes; Williams, Ashley; Woo, Youngchoon; Wright, Adam J.; Xiang, Qian; Yang, Liming; Yuen, Denis; Yung, Christina K.; Zhang, Junjun
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Pathway and network analysis of more than 2500 whole cancer genomes
err2020-02-05
err77
errOAAI
errReyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Soren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Juri; Stuart, Joshua M.; Raphael, Benjamin J.
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The role of governmental commitment on regulated utilities
err2019-10-01
err0
PREAI
errDe Meio Reggiani, Martin C.; Vazquez, Miguel; Hallack, Michelle; Brignole, Nelida B.
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Price computation in electricity auctions with complex rules: An analysis of investment signals
err2017-06-01
err10
PREAI
errVazquez, Carlos; Hallack, Michelle; Vazquez, Miguel
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