Not logged in cyMAEv2: learning robust cell representations in mass cytometry without supervision Kim, Jaesik; Ionita, Matei; Lee, Matthew Eric; Leiby, Jacob S.; Huang, Yidi; Lee, Jonghyun; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Painter, Mark M.; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon Share Save
Representing immune profiles with self-supervised set representation learning Lee, Matthew Eric; Ionita, Matei; Kim, Jaesik; Lee, Jonghyun; Huang, Yidi; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Kim, Dokyoon; Wherry, E. John Share Save
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Automated cytometric gating with human-level performance using bivariate segmentation Chen, Jiong; Ionita, Matei; Feng, Yanbo; Lu, Yinfeng; Orzechowski, Patryk; Garai, Sumita; Hassinger, Kenneth; Bao, Jingxuan; Wen, Junhao; Duong-Tran, Duy; Wagenaar, Joost; Mckeague, Michelle L.; Painter, Mark M.; Mathew, Divij; Pattekar, Ajinkya; Meyer, Nuala J.; Wherry, E. John; Greenplate, Allison R.; Shen, Li Share Save
Cytometry masked autoencoder: An accurate and interpretable automated immunophenotyper Kim, Jaesik; Ionita, Matei; Lee, Matthew; Mckeague, Michelle L.; Pattekar, Ajinkya; Painter, Mark M.; Wagenaar, Joost; Truong, Van; Norton, Dylan T.; Mathew, Divij; Nam, Yonghyun; Apostolidis, Sokratis A.; Clendenin, Cynthia; Orzechowski, Patryk; Jung, Sang-Hyuk; Woerner, Jakob; Ittner, Caroline A. G.; Turner, Alexandra P.; Esperanza, Mika; Dunn, Thomas G.; Mangalmurti, Nilam S.; Reilly, John P.; Meyer, Nuala J.; Calfee, Carolyn S.; Liu, Kathleen D.; Matthy, Michael A.; Swigart, Lamorna Brown; Burnham, Ellen L.; Mckeehan, Jeffrey; Gandotra, Sheetal; Russel, Derek W.; Gibbs, Kevin W.; Thomas, Karl W.; Barot, Harsh; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon Share Save
Scalable approaches for functional analyses of whole-genome sequencing non-coding variants Kuksa, Pavel P.; Greenfest-Allen, Emily; Cifello, Jeffrey; Ionita, Matei; Wang, Hui; Issen, Heather; Cheng, Po-Liang; Lee, Wan-Ping; Wang, Li-San; Leung, Yuk Yee Share Save
High dimensional flow cytometric analysis or the peripheral immune profile and response to HER2-targeted antibody therapy Ogayo, Esther R.; Waks, Adrienne; Rogers, Wade; Ionita, Matei; Adigwe, Kenechukwu; Alberti, Jillian; Kadel, Sapana; Moore, Jonni; King, Tari; Krop, Ian; Tolaney, Sara; Winer, Eric; Guerriero, Jennifer; Mittendorf, Elizabeth Share Save
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