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C

C. H. Mak

university of southern california

36H-index
130Paper Count
3.6KCitation Count
Published Papers 32
Publication Date
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RNA fold prediction by Monte Carlo in graph space and the statistical mechanics of tertiary interactions
errRNA
IF5
err2024-10-23
err0
errOAAI
errPhan, Ethan N. H.; Mak, Chi H.
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Hydration Waters Make Up for the Missing Third Hydrogen Bond in the AT Base Pair
errACS PHYSICAL CHEMISTRY AU
IF4.3
err2024-01-24
err1
errOAAI
errMak, Chi H.
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errSave
Host cell RecA activates a mobile element-encoded mutagenic DNA polymerase
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-06-23
err5
errOAAI
errOjha, Debika; Jaszczur, Malgorzata M.; Sikand, Adhirath; McDonald, John P.; Robinson, Andrew; van Oijen, Antoine M.; Mak, Chi H.; Pinaud, Fabien; Cox, Michael M.; Woodgate, Roger; Goodman, Myron F.
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Nucleic acid folding simulations using a physics-based atomistic free energy model
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2022-05-05
err1
errOAAI
errMak, Chi H.
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errSave
Diagrammatic approaches to RNA structures with trinucleotide repeats
errBIOPHYSICAL JOURNAL
IF3.1
err2021-06-01
err1
errOAAI
errMak, Chi H.; Phan, Ethan N. H.
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errSave
Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP
errPLOS GENETICS
IF3.7
err2019-02-04
err11
errOAAI
errJaszczur, Malgorzata M.; Vo, Dan D.; Stanciauskas, Ramunas; Bertram, Jeffrey G.; Sikand, Adhirath; Cox, Michael M.; Woodgate, Roger; Mak, Chi H.; Pinaud, Fabien; Goodman, Myron F.
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Topological Constraints and Their Conformational Entropic Penalties on RNA Folds
errBIOPHYSICAL JOURNAL
IF3.1
err2018-05-01
err10
errOAAI
errMak, Chi H.; Phan, Ethan N. H.
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errSave
Quantifying Nucleic Acid Base Pairing Free Energy
errBIOPHYSICAL JOURNAL
IF3.1
err2018-02-01
err0
errOAAI
errLi, Rongpeng; Mak, Chi H.
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Topological Constraints and Their Conformational Entropic Penalties on RNA Folds
errBIOPHYSICAL JOURNAL
IF3.1
err2018-02-01
err1
errOAAI
errPhan, Ethan N. H.; Mak, Chi H.
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errSave
Solvent Thermodynamic Driving Force Controls Stacking Interactions between Polyaromatics
errJOURNAL OF PHYSICAL CHEMISTRY C
IF3.2
err2016-10-12
err14
PREAI
errRury, Aaron S.; Ferry, Christine; Hunt, Jonathan Ryan; Lee, Myungjin; Mondal, Dibyendu; O'Connell, Sean M. O.; Phan, Ethan N. H.; Peng, Zaili; Pokhilko, Pavel; Sylvinson, Daniel; Zhou, Yingsheng; Mak, Chi H.
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An implicit divalent counterion force field for RNA molecular dynamics
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2016-03-14
err8
PREAI
errHenke, Paul S.; Mak, Chi H.
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errSave
Entropic Determinants and Barriers in the Formation of RNA Secondary Structures
errBIOPHYSICAL JOURNAL
IF3.1
err2016-02-01
err0
errOAAI
errMak, Chi H.; Ferry, Christine
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errSave
Activation-induced deoxycytidine deaminase (AID) co-transcriptional scanning at single-molecule resolution
errNATURE COMMUNICATIONS
IF15.7
err2015-12-18
err27
errOAAI
errSenavirathne, Gayan; Bertram, Jeffrey G.; Jaszczur, Malgorzata; Chaurasiya, Kathy R.; Pham, Phuong; Mak, Chi H.; Goodman, Myron F.; Rueda, David
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Free energy of RNA-counterion interactions in a tight-binding model computed by a discrete space mapping
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2014-08-14
err13
PREAI
errHenke, Paul S.; Mak, Chi H.
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errSave
Conformational Entropy of the RNA Phosphate Backbone and Its Contribution to the Folding Free Energy
errBIOPHYSICAL JOURNAL
IF3.1
err2014-04-01
err5
errOAAI
errMak, Chi H.; Matossian, Tyler; Chung, Wen-Yeuan
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Watching Aid Scanning Single Stranded and Transcribed DNA with Single Molecule Resolution
errBIOPHYSICAL JOURNAL
IF3.1
err2014-01-01
err1
errOAAI
errSenavirathne, Gayan; Bertram, Jeff; Jaszczur, Malgorzata; Phuong Pham; Mak, Chi; Goodman, Myron F.; Rueda, David
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errSave
A Mathematical Model for Scanning and Catalysis on Single-stranded DNA, Illustrated with Activation-induced Deoxycytidine Deaminase
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2013-10-01
err32
errOAAI
errMak, Chi H.; Phuong Pham; Afif, Samir A.; Goodman, Myron F.
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errSave
Ions and RNAs: Free Energies of Counterion-Mediated RNA Fold Stabilities
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2012-11-01
err21
PREAI
errMak, C. H.; Henke, Paul S.
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errSave
RNA Conformational Sampling: II. Arbitrary Length Multinucleotide Loop Closure
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2011-03-11
err9
PREAI
errMak, C. H.; Chung, Wen-Yeuan; Markovskiy, Nikolay D.
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The sign problem in real-time path integral simulations: Using the cumulant action to implement multilevel blocking
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2009-07-28
err3
PREAI
errMak, C. H.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
M
Myron F. Goodman
H-index: 85 · Papers: 360
M
Michael M. Cox
H-index: 74 · Papers: 377
R
Roger Woodgate
H-index: 73 · Papers: 232
A
A. W. Neumann
H-index: 71 · Papers: 414
A
Andrea J. Liu
H-index: 68 · Papers: 441
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