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Barry Honig

columbia university

120H-index
471Paper Count
6.4WCitation Count
Published Papers 155
Publication Date
A functional investigation of antibody Fc-FcRn variant binding guided by in silico free energy perturbation methods
err2026-08-10
err0
PREAI
errJared M. Sampson; Alina P. Sergeeva; Tianyang Gao; Young Do Kwon; Eswar Reddem; Fabiana A. Bahna; Seetha M. Mannepalli; Baoshan Zhang; Peter D. Kwong; Lawrence Shapiro; Barry Honig; Richard A. Friesner
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Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks
err2026-04-11
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errOAAI
errH. Zhao; C. Velez; A. Naravane; A. Saha; J. Feldman; J. Skolnick; D. Murray; B. Honig
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PrePPI – Structure-based prediction of protein-protein interactomes and networks
err2026-02-27
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PREAI
errCaroline Velez; Aniket Naravane; Victor I. Robila; Aakash Saha; Diana Murray; Barry Honig
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Astrocyte morphogenesis requires self-recognition
errNATURE
IF48.5
err2025-05-28
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PREAI
errLee, John H.; Sergeeva, Alina P.; Ahlsen, Goran; Mannepalli, Seetha; Bahna, Fabiana; Goodman, Kerry M.; Xu, Runzhe; Khakh, Baljit S.; Weiner, Joshua A.; Shapiro, Lawrence; Honig, Barry; Zipursky, S. Lawrence
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Members of the DIP and Dpr adhesion protein families use cis inhibition to shape neural development in Drosophila
err2025-03-03
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errOAAI
errMorano, Nicholas C.; Lopez, Davys H.; Meltzer, Hagar; Sergeeva, Alina P.; Katsamba, Phinikoula S.; Rostam, Kevin D.; Gupta, Himanshu Pawankumar; Becker, Jordan E.; Bornstein, Bavat; Cosmanescu, Filip; Schuldiner, Oren; Honig, Barry; Mann, Richard S.; Shapiro, Lawrence
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A Method for Treating Significant Conformational Changes in Alchemical Free Energy Simulations of Protein-Ligand Binding
err2024-09-27
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PREAI
errLiao, Junzhuo; Sergeeva, Alina P.; Harder, Edward D.; Wang, Lingle; Sampson, Jared M.; Honig, Barry; Friesner, Richard A.
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Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis
err2024-05-09
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errOAAI
errRosenberger, George; Li, Wenxue; Turunen, Mikko; He, Jing; Subramaniam, Prem S.; Pampou, Sergey; Griffin, Aaron T.; Karan, Charles; Kerwin, Patrick; Murray, Diana; Honig, Barry; Liu, Yansheng; Califano, Andrea
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Push-pull mechanics of E-cadherin ectodomains in biomimetic adhesions
err2023-09-01
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PREAI
errNagendra, Kartikeya; Izzet, Adrien; Judd, Nicolas B.; Zakine, Ruben; Friedman, Leah; Harrison, Oliver J.; Pontani, Lea-Laetitia; Shapiro, Lawrence; Honig, Barry; Brujic, Jasna
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Specific regulation of BACH1 by the hotspot mutant p53R175H reveals a distinct gain-of-function mechanism
err2023-03-27
err28
errOAAI
errSu, Zhenyi; Kon, Ning; Yi, Jingjie; Zhao, Haiqing; Zhang, Wanwei; Tang, Qiaosi; Li, Huan; Kobayashi, Hiroki; Li, Zhiming; Duan, Shoufu; Liu, Yanqing; Olive, Kenneth P. P.; Zhang, Zhiguo; Honig, Barry; Manfredi, James J. J.; Rustgi, Anil K. K.; Gu, Wei
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Affinity requirements for control of synaptic targeting and neuronal cell survival by heterophilic IgSF cell adhesion molecules
err2022-04-01
err10
errOAAI
errXu, Shuwa; Sergeeva, Alina P.; Katsamba, Phinikoula S.; Mannepalli, Seetha; Bahna, Fabiana; Bimela, Jude; Zipursky, S. Lawrence; Shapiro, Lawrence; Honig, Barry; Zinn, Kai
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How clustered protocadherin binding specificity is tuned for neuronal self-/nonself-recognition
err2022-03-07
err17
PREAI
errGoodman, Kerry Marie; Katsamba, Phinikoula S.; Rubinstein, Rotem; Ahlsen, Goran; Bahna, Fabiana; Mannepalli, Seetha; Dan, Hanbin; Sampogna, Rosemary, V; Shapiro, Lawrence; Honig, Barry; Shen, Kang
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Synaptogenic activity of the axon guidance molecule Robo2 underlies hippocampal circuit function
err2021-10-01
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errOAAI
errBlockus, Heike; Rolotti, Sebi, V; Szoboszlay, Miklos; Peze-Heidsieck, Eugenie; Ming, Tiffany; Schroeder, Anna; Apostolo, Nuno; Vennekens, Kristel M.; Katsamba, Phinikoula S.; Bahna, Fabiana; Mannepalli, Seetha; Ahlsen, Goran; Honig, Barry; Shapiro, Lawrence; de Wit, Joris; Losonczy, Attila; Polleux, Franck
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Sorting of cadherin-catenin-associated proteins into individual clusters
err2021-07-16
err14
errOAAI
errTroyanovsky, Regina B.; Sergeeva, Alina P.; Indra, Indrajyoti; Chen, Chi-Shuo; Kato, Rei; Shapiro, Lawrence; Honig, Barry; Troyanovsky, Sergey M.
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Integrating 3D structural information into systems biology
err2021-01-01
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errOAAI
errMurray, Diana; Petrey, Donald; Honig, Barry
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Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses
err2020-09-14
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errOAAI
errBroyde, Joshua; Simpson, David R.; Murray, Diana; Paull, Evan O.; Chu, Brennan W.; Tagore, Somnath; Jones, Sunny J.; Griffin, Aaron T.; Giorgi, Federico M.; Lachmann, Alexander; Jackson, Peter; Sweet-Cordero, E. Alejandro; Honig, Barry; Califano, Andrea
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Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis
err2020-06-08
err22
errOAAI
errGanapathi, Mythily; Argyriou, Loukas; Martinez-Azorin, Francisco; Morlot, Susanne; Yigit, Gokhan; Lee, Teresa M.; Auber, Bernd; von Gise, Alexander; Petrey, Donald S.; Thiele, Holger; Cyganek, Lukas; Sabater-Molina, Maria; Ahimaz, Priyanka; Cabezas-Herrera, Juan; Sorli-Garcia, Moises; Zibat, Arne; Siegelin, Markus D.; Burfeind, Peter; Buchovecky, Christie M.; Hasenfuss, Gerd; Honig, Barry; Li, Yun; Iglesias, Alejandro D.; Wollnik, Bernd
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DIP/Dpr interactions and the evolutionary design of specificity in protein families
err2020-05-01
err26
errOAAI
errSergeeva, Alina P.; Katsamba, Phinikoula S.; Cosmanescu, Filip; Brewer, Joshua J.; Ahlsen, Goran; Mannepalli, Seetha; Shapiro, Lawrence; Honig, Barry
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