Not logged inEcolink: Towards a Knowledge Graph Schema for Complex Environmental Systems
Alamenciak, Tim; Arnillas, Carlos Alberto; Caufield, Harry; Compton, Katherine; Drew, Kian; Fruhstuckl, Robert; Heger, Tina; Koenig-Ries, Birgitta; Mungall, Chris; Moxon, Sierra; Reese, Justin; Tardif, Jordan; Vogt, Lars
Share
SaveThe Gene Ontology knowledgebase in 2026
Aleksander, Suzi A.; Balhoff, James P.; Carbon, Seth; Cherry, J. Michael; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Kalita, Patrick; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganujan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Wong, Edith D.; Wood, Valerie; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Dodson, Robert; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Naser, Ximena Aixa Castro; Tosatto, Silvio C. E.; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; Brown, Nicholas H.; Dos Santos, Gil; Marygold, Steven; Roper, Katja; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Zaru, Rossana; Lovering, Ruth C.; Logie, Colin; Chen, Daqing; Naba, Alexandra; Christie, Karen; Corbani, Lori; Ni, Li; Sitnikov, Dmitry; Smith, Cynthia; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Carme, Pascal; Rutherford, Kim; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Goldbold, Gene; Engel, Stacia R.; Miyasato, Stuart R.; Nash, Robert S.; Sherlock, Gavin; Weng, Shuai; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Famiglietti, Maria Livia; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Mercier, Philippe Le; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Adesina, Aduragbemi; Bowler-Barnett, Emily; Carpentier, David; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Urakova, Nadya; Warner, Kate; Yu, Conny Wing-Hen; Chan, Juancarlos; Diamantakis, Stavros; Quinton-Tulloch, Mark; Raciti, Daniela; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Howe, Doug; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte
Share
SaveMicrobiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities (vol 6, e01194-20, 2021)
Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pa, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A.
Share
SaveMicrobiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities
Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L.; Berrios, Daniel C.; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V.; Damerow, Joan; Duncan, William D.; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M.; Gibbons, Sean M.; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L.; Jaiswal, Pankaj; Joachimiak, Marcin P.; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L.; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T. B. K.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P.; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R.; Timme, Ruth E.; Zheng, Jie; Wood-Charlson, Elisha M.; Eloe-Fadrosh, Emiley A.
Share
SaveHow many rare diseases are there?
Haendel, Melissa; Vasilevsky, Nicole; Unni, Deepak; Bologa, Cristian; Harris, Nomi; Rehm, Heidi; Hamosh, Ada; Baynam, Gareth; Groza, Tudor; McMurry, Julie; Dawkins, Hugh; Rath, Ana; Thaxon, Courtney; Bocci, Giovanni; Joachimiak, Marcin P.; Koehler, Sebastian; Robinson, Peter N.; Mungall, Chris; Oprea, Tudor I.
Share
SaveExpansion of the Human Phenotype Ontology (HPO) knowledge base and resources
Koehler, Sebastian; Carmody, Leigh; Vasilevsky, Nicole; Jacobsen, Julius O. B.; Danis, Daniel; Gourdine, Jean-Philippe; Gargano, Michael; Harris, Nomi L.; Matentzoglu, Nicolas; McMurry, Julie A.; Osumi-Sutherland, David; Cipriani, Valentina; Balhoff, James P.; Conlin, Tom; Blau, Hannah; Baynam, Gareth; Palmer, Richard; Gratian, Dylan; Dawkins, Hugh; Segal, Michael; Jansen, Anna C.; Muaz, Ahmed; Chang, Willie H.; Bergerson, Jenna; Laulederkind, Stanley J. F.; Yueksel, Zafer; Beltran, Sergi; Freeman, Alexandra F.; Sergouniotis, Panagiotis I.; Durkin, Daniel; Storm, Andrea L.; Hanauer, Marc; Brudno, Michael; Bello, Susan M.; Sincan, Murat; Rageth, Kayli; Wheeler, Matthew T.; Oegema, Renske; Lourghi, Halima; Della Rocca, Maria G.; Thompson, Rachel; Castellanos, Francisco; Priest, James; Cunningham-Rundles, Charlotte; Hegde, Ayushi; Lovering, Ruth C.; Hajek, Catherine; Olry, Annie; Notarangelo, Luigi; Similuk, Morgan; Zhang, Xingmin A.; Gomez-Andres, David; Lochmueller, Hanns; Dollfus, Helene; Rosenzweig, Sergio; Marwaha, Shruti; Rath, Ana; Sullivan, Kathleen; Smith, Cynthia; Milner, Joshua D.; Leroux, Dorothee; Boerkoel, Cornelius F.; Klion, Amy; Carter, Melody C.; Groza, Tudor; Smedley, Damian; Haendel, Melissa A.; Mungall, Chris; Robinson, Peter N.
Share
SaveECO, the Evidence & Conclusion Ontology: community standard for evidence information
Giglio, Michelle; Tauber, Rebecca; Nadendla, Suvarna; Munro, James; Olley, Dustin; Ball, Shoshannah; Mitraka, Elvira; Schriml, Lynn M.; Gaudet, Pascale; Hobbs, Elizabeth T.; Erill, Ivan; Siegele, Deborah A.; Hu, James C.; Mungall, Chris; Chibucos, Marcus C.
Share
SavePlain-language medical vocabulary for precision diagnosis
Vasilevsky, Nicole A.; Foster, Erin D.; Engelstad, Mark E.; Carmody, Leigh; Might, Matt; Chambers, Chip; Dawkins, Hugh J. S.; Lewis, Janine; Della Rocca, Maria G.; Snyder, Michelle; Boerkoel, Cornelius F.; Rath, Ana; Terry, Sharon F.; Kent, Alastair; Searle, Beverly; Baynam, Gareth; Jones, Erik; Gavin, Pam; Bamshad, Michael; Chong, Jessica; Groza, Tudor; Adams, David; Resnick, Adam C.; Heath, Allison P.; Mungall, Chris; Holm, Ingrid A.; Rageth, Kayli; Brownstein, Catherine A.; Shefchek, Kent; McMurry, Julie A.; Robinson, Peter N.; Koehler, Sebastian; Haendel, Melissa A.
Share
SaveThe Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Cooper, Laurel; Meier, Austin; Laporte, Marie-Angelique; Elser, Justin L.; Mungall, Chris; Sinn, Brandon T.; Cavaliere, Dario; Carbon, Seth; Dunn, Nathan A.; Smith, Barry; Qu, Botong; Preece, Justin; Zhang, Eugene; Todorovic, Sinisa; Gkoutos, Georgios; Doonan, John H.; Stevenson, Dennis W.; Arnaud, Elizabeth; Jaiswal, Pankaj
Share
SaveUpdate of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia A.; Lennartsson, Andreas; Drablos, Finn; Ramilowski, Jordan A.; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R. R.; Kasukawa, Takeya; Kawaji, Hideya
Share
SaveOntobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration
Ong, Edison; Xiang, Zuoshuang; Zhao, Bin; Liu, Yue; Lin, Yu; Zheng, Jie; Mungall, Chris; Courtot, Melanie; Ruttenberg, Alan; He, Yongqun
Share
SaveThe Matchmaker Exchange API: Automating Patient Matching Through the Exchange of Structured Phenotypic and Genotypic Profiles
Buske, Orion J.; Schiettecatte, Francois; Hutton, Benjamin; Dumitriu, Sergiu; Misyura, Andriy; Huang, Lijia; Hartley, Taila; Girdea, Marta; Sobreira, Nara; Mungall, Chris; Brudno, Michael
Share
Save
Share
SaveThe Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
Koehler, Sebastian; Doelken, Sandra C.; Mungall, Christopher J.; Bauer, Sebastian; Firth, Helen V.; Bailleul-Forestier, Isabelle; Black, Graeme C. M.; Brown, Danielle L.; Brudno, Michael; Campbell, Jennifer; FitzPatrick, David R.; Eppig, Janan T.; Jackson, Andrew P.; Freson, Kathleen; Girdea, Marta; Helbig, Ingo; Hurst, Jane A.; Jaehn, Johanna; Jackson, Laird G.; Kelly, Anne M.; Ledbetter, David H.; Mansour, Sahar; Martin, Christa L.; Moss, Celia; Mumford, Andrew; Ouwehand, Willem H.; Park, Soo-Mi; Riggs, Erin Rooney; Scott, Richard H.; Sisodiya, Sanjay; Van Vooren, Steven; Wapner, Ronald J.; Wilkie, Andrew O. M.; Wright, Caroline F.; Vulto-van Silfhout, Anneke T.; de Leeuw, Nicole; de Vries, Bert B. A.; Washingthon, Nicole L.; Smith, Cynthia L.; Westerfield, Monte; Schofield, Paul; Ruef, Barbara J.; Gkoutos, Georgios V.; Haendel, Melissa; Smedley, Damian; Lewis, Suzanna E.; Robinson, Peter N.
Share
SaveDovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology
Hill, David P.; Adams, Nico; Bada, Mike; Batchelor, Colin; Berardini, Tanya Z.; Dietze, Heiko; Drabkin, Harold J.; Ennis, Marcus; Foulger, Rebecca E.; Harris, Midori A.; Hastings, Janna; Kale, Namrata S.; de Matos, Paula; Mungall, Christopher J.; Owen, Gareth; Roncaglia, Paola; Steinbeck, Christoph; Turner, Steve; Lomax, Jane
Share
SavePhenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish
Doelken, Sandra C.; Koehler, Sebastian; Mungall, Christopher J.; Gkoutos, Georgios V.; Ruef, Barbara J.; Smith, Cynthia; Smedley, Damian; Bauer, Sebastian; Klopocki, Eva; Schofield, Paul N.; Westerfield, Monte; Robinson, Peter N.; Lewis, Suzanna E.
Share
SaveThe Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
Cooper, Laurel; Walls, Ramona L.; Elser, Justin; Gandolfo, Maria A.; Stevenson, Dennis W.; Smith, Barry; Preece, Justin; Athreya, Balaji; Mungall, Christopher J.; Rensing, Stefan; Hiss, Manuel; Lang, Daniel; Reski, Ralf; Berardini, Tanya Z.; Li, Donghui; Huala, Eva; Schaeffer, Mary; Menda, Naama; Arnaud, Elizabeth; Shrestha, Rosemary; Yamazaki, Yukiko; Jaiswal, Pankaj
Share
SaveMouseFinder: Candidate Disease Genes from Mouse Phenotype Data
Chen, Chao-Kung; Mungall, Christopher J.; Gkoutos, Georgios V.; Doelken, Sandra C.; Koehler, Sebastian; Ruef, Barbara J.; Smith, Cynthia; Westerfield, Monte; Robinson, Peter N.; Lewis, Suzanna E.; Schofield, Paul N.; Smedley, Damian
Share
Save
Share
SaveHematopoietic cell types: Prototype for a revised cell ontology
Diehl, Alexander D.; Augustine, Alison Deckhut; Blake, Judith A.; Cowell, Lindsay G.; Gold, Elizabeth S.; Gondre-Lewis, Timothy A.; Masci, Anna Maria; Meehan, Terrence F.; Morel, Penelope A.; Nijnik, Anastasia; Peters, Bjoern; Pulendran, Bali; Scheuermann, Richard H.; Yao, Q. Alison; Zand, Martin S.; Mungall, Christopher J.
Share
Save