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The IBEX Knowledge-Base: A central resource for multiplexed imaging techniques Radtke, Andrea J.; Anidi, Ifeanyichukwu U.; Arakkal, Leanne; Arroyo-Mejias, Armando J.; Beuschel, Rebecca T.; Borner, Katy; Chu, Colin J.; Clark, Beatrice; Clatworthy, Menna R.; Colautti, Jake; Coscia, Fabian; Croteau, Joshua; Denha, Saven; Dever, Rose; Dutra, Walderez O.; Fritzsche, Sonja; Fullam, Spencer; Gerner, Michael Y.; Gola, Anita; Gollob, Kenneth J.; Hernandez, Jonathan M.; Hor, Jyh Liang; Ichise, Hiroshi; Jing, Zhixin; Jonigk, Danny; Kandov, Evelyn; Kastenmueller, Wolfgang; Koenig, Joshua F. E.; Kortekaas, Rosa K.; Kothurkar, Aanandita; Kreins, Alexandra Y.; Lamborn, Ian T.; Lin, Yuri; Luciano Pereira Morais, Katia; Lunich, Aleksandra; Luz, Jean C. S.; Macdonald, Ryan B.; Makranz, Chen; Maltez, Vivien I.; Mcdonough, John E.; Moriarty, Ryan V.; Ocampo-Godinez, Juan M.; Olyntho, Vitoria M.; Oxenius, Annette; Padhan, Kartika; Remmert, Kirsten; Richoz, Nathan; Schrom, Edward C.; Shang, Wanjing; Shi, Lihong; Shih, Rochelle M.; Speranza, Emily; Stierli, Salome; Teichmann, Sarah A.; Veres, Tibor Z.; Vierhout, Megan; Wachter, Brianna T.; Wade-Vallance, Adam K.; Williams, Margaret; Zangger, Nathan; Germain, Ronald N.; Yaniv, Ziv Share Save
Epigenetic age acceleration in idiopathic pulmonary fibrosis revealed by DNA methylation clocks Kurbanov, DB; Ahangari, F; Adams, T; De Man, R; Tang, J; Carlon, M; Abu Hussein, N; Cortesi, E; Zapata, M; De Sadelaar, L; Wuyts, W; Vanaudenaerde, B; Kaminski, N; McDonough, JE Share Save
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Stem cell migration drives lung repair in living mice Chioccioli, Maurizio; Liu, Shuyu; Magruder, Sumner; Tata, Aleksandra; Borriello, Lucia; McDonough, John E.; Konkimalla, Arvind; Kim, Sang -Hun; Nouws, Jessica; Gonzalez, David G.; Traub, Brian; Ye, Xianjun; Yang, Tao; Entenberg, David R.; Krishnaswamy, Smita; Hendry, Caroline E.; Kaminski, Naftali; Tata, Purushothama Rao; Sauler, Maor Share Save
Ventilatory capacity in CLAD is driven by dysfunctional airway structure Kerckhof, Pieterjan; Ambrocio, Gene P. L.; Beeckmans, Hanne; Kaes, Janne; Geudens, Vincent; Bos, Saskia; Willems, Lynn; Vermaut, Astrid; Vermant, Marie; Goos, Tinne; De Fays, Charlotte; Aversa, Lucia; Mohamady, Yousry; Vanstapel, Arno; Orlitova, Michaela; Van Slambrouck, Jan; Jin, Xin; Varghese, Vimi; Josipovic, Ivan; Boone, Matthieu N.; Dupont, Lieven J.; Weynand, Birgit; Dubbeldam, Adriana; Van Raemdonck, Dirk E.; Ceulemans, Laurens J.; Gayan-Ramirez, Ghislaine; Sadeleer, Laurens J. De; Mcdonough, John E.; Vanaudenaerde, Bart M.; Vas, Robin Share Save
Assessment of Small Airway Flow Parameters: A Comparative Study between Realistic and Idealistic Computational Models Mohamady, Yousry Khaled Mohamed Elmahdy; Geudens, Vincent; De Fays, Charlotte; Gyselinck, Iwein; Aversa, Lucia; Kerckhof, Pieter-Jan; Aerts, Gitte; Vermaut, Astrid; Beeckmans, Hanne; Maes, Karen; Willems, Lynn; Vermant, Marie; Cortesi, Emanuela Elsa; Goos, Tinne; Mcdonough, John; Godinas, Laurent; Quarck, Rozenn; Wuyts, Wim; Vos, Robin; Ceulemans, Laurens; Van Raemdonck, Dirk; Ramirez, Ghislaine; Janssens, Wim; Filoche, Marcel; Vanaudenaerde, Bart Share Save
Small airway obstruction according to emphysema severity in human lungs Geudens, Vincent; De Fays, Charlotte; Vermaut, Astrid; Willems, Lynn; Kaes, Janne; Goos, Tinne; Vermant, Marie; Gyselinck, Iwein; Aversa, Lucia; Beeckmans, Hanne; Jin, Xin; Hooft, Charlotte; Verhaegen, Janne; Aerts, Gitte; Kerckhof, Pieterjan; Mcdonough, John E.; Quarck, Rozenn; Everaerts, Stephanie; Weynand, Birgit; Pilette, Charles; Van Raemdonck, Dirk E.; Ceulemans, Laurens J.; Wuyts, Wim A.; Vos, Robin; Janssens, Wim; Vanaudenaerde, Bart M.; Gayan-Ramirez, Ghislaine Share Save
The cellular immune landscape in end-stage cystic fibrosis lungs Vermaut, Astrid; Kerckhof, Pieterjan; Beeckmans, Hanne; De Fays, Charlotte; Geudens, Vincent; Kaes, Janne; Willems, Lynn; Aerts, Gitte; Hooft, Charlotte; Mohamady, Yousry; Van Slambrouck, Jan; Weynand, Birgit; Gayan-Ramirez, Ghislaine; De Sadeleer, Laurens; Maes, Karen; Godinas, Laurent; Mcdonough, John; Kaminsky, Naftali; Ceulemans, Laurens J.; Vos, Robin; Dupont, Lieven; Vanaudenaerde, Bart M.; Boon, Mieke Share Save
Identification of abnormal airway niches in the fibrotic lung using Spatial Transcriptomics Justet, Aurelien; Zhao, Jiayi; Adams, Taylor; Balayev, Agshin; Barnthaler, Thomas; Raredon, Sam; De Frias, Fernando Poli; Cala-Garcia, Juan; Mcdonough, John; Zhao, Amy; Liu Yunqing; Li Ningshan; Anita, Wang; Rosas, Ivan; Yan, Xiting; Kaminski, Naftali Share Save
Computational fluid dynamics analysis of small airway deformation in COPD Mohamady, Yousry Khaled Mohamed Elmahdy; Geudens, Vincent; De Fays, Charlotte; Gyselinck, Iwein; Aversa, Lucia; Kerckhof, Pieter Jan; Aerts, Gitte; Vermaut, Astrid; Beeckmans, Hanne; Maes, Karen; Willems, Lynn; Vermant, Marie; Mcdonough, John; Godinas, Laurent; Quarck, Rozenn; Wuyts, Wim; Vos, Robin; Ceulemans, Laurens; Van Raemdonck, Dirk; Ramirez, Ghislaine; Janssens, Wim; Filoche, Marcel; Vanaudenaerde, Bart Share Save
Mucosal immune alterations at the early onset of tissue destruction in chronic obstructive pulmonary disease de Fays, Charlotte; Geudens, Vincent; Gyselinck, Iwein; Kerckhof, Pieterjan; Vermaut, Astrid; Goos, Tinne; Vermant, Marie; Beeckmans, Hanne; Kaes, Janne; Van Slambrouck, Jan; Mohamady, Yousry; Willems, Lynn; Aversa, Lucia; Cortesi, Emanuela E.; Hooft, Charlotte; Aerts, Gitte; Aelbrecht, Celine; Everaerts, Stephanie; McDonough, John E.; De Sadeleer, Laurens J.; Gohy, Sophie; Ambroise, Jerome; Janssens, Wim; Ceulemans, Laurens J.; Van Raemdonck, Dirk; Vos, Robin; Hackett, Tillie L.; Hogg, James C.; Kaminski, Naftali; Gayan-Ramirez, Ghislaine; Pilette, Charles; Vanaudenaerde, Bart M. Share Save
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microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis Ahangari, Farida; Price, Nathan L.; Malik, Shipra; Chioccioli, Maurizio; Barnthaler, Thomas; Adams, Taylor S.; Kim, Jooyoung; Pradeep, Sai Pallavi; Ding, Shuizi; Cosmos Jr., Carlos; Rose, Kadi-Ann S.; McDonough, John E.; Aurelien, Nachelle R.; Ibarra, Gabriel; Omote, Norihito; Schupp, Jonas C.; DeIuliis, Giuseppe; Nunez, Julian A. Villalba; Sharma, Lokesh; Ryu, Changwan; Dela Cruz, Charles S.; Liu, Xinran; Prasse, Antje; Rosas, Ivan; Bahal, Raman; Fernandez-Hernando, Carlos; Kaminski, Naftali Share Save
BAL Transcriptomes Characterize Idiopathic Pulmonary Fibrosis Endotypes With Prognostic Impact De Sadeleer, Laurens J.; Verleden, Stijn E.; Schupp, Jonas C.; McDonough, John E.; Goos, Tinne; Yserbyt, Jonas; Bargagli, Elena; Rottoli, Paola; Kaminski, Naftali; Prasse, Antje; Wuyts, Wim A. Share Save
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