Thomas R. Rogers - Publications, H-index & Citations

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Thomas R. Rogers

hopital universitaire ambroise-pare - aphp

58H-index

279Paper Count

1.2WCitation Count

Published Papers 78

Publication Date

COPD and Aspergillus—a complex interaction of global health importance

Lancet Infectious Diseases

IF31

2026-08-18

PREAI

David W Denning; Margherita Bertuzzi; Sanjay H Chotirmall; Thomas M Wilkinson; Alexander G Mathioudakis; Sara Gago; Takahiro Takazono; Thomas R Rogers; Paul Bowyer; Chris Kosmidis; Jesus Guinea; Katrien Lagrou; Wim Janssens; Animesh Ray; Darius Armstrong James; Claus F Vogelmeier; Xin Su; Mona Bafadhel; Yongchang Sun; Nicolas Roche

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An Investigation into the Prevalence of Clostridioides difficile in Irish Pig Abattoirs and Pork Meat Products as a Potential Source of Human Infection

ANTIBIOTICS-BASEL

IF4.6

2025-02-04

OAAI

Doyle, Aoife; Rogers, Thomas R.; Bolton, Declan; Burgess, Catherine M.; Whyte, Paul; Frias, Jesus; Fanning, Seamus; Mcelroy, Maire C.

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Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques

PLOS PATHOGENS

IF4.9

2025-01-23

OAAI

Edwards, Christopher T.; Karunakaran, Kirti A.; Garcia, Elijah; Beutler, Nathan; Gagne, Matthew; Golden, Nadia; Aoued, Hadj; Pellegrini, Kathryn L.; Burnett, Matthew R.; Honeycutt, Christopher Cole; Lapp, Stacey A.; Ton, Thang; Lin, Mark C.; Metz, Amanda; Bombin, Andrei; Goff, Kelly; Scheuermann, Sarah E.; Wilkes, Amelia; Wood, Jennifer S.; Ehnert, Stephanie; Weissman, Stacey; Curran, Elizabeth H.; Roy, Melissa; Dessasau, Evan; Paiardini, Mirko; Upadhyay, Amit A.; Moore, Ian N.; Maness, Nicholas J.; Douek, Daniel C.; Piantadosi, Anne; Andrabi, Raiees; Rogers, Thomas R.; Burton, Dennis R.; Bosinger, Steven E.

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Antimicrobial susceptibility profiles of hypervirulent strains of Clostridioides difficile of pig and human origin

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2024-08-23

OAAI

Doyle, Aoife; McElroy, Maire; Rogers, Thomas

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Polymerase Chain Reaction on Respiratory Tract Specimens of Immunocompromised Patients to Diagnose Pneumocystis Pneumonia: A Systematic Review and Meta-analysis

CLINICAL INFECTIOUS DISEASES

IF7.3

2024-06-11

OAAI

Brown, Lottie; Rautemaa-Richardson, Riina; Mengoli, Carlo; Alanio, Alexandre; Barnes, Rosemary A.; Bretagne, Stephane; Chen, Sharon C. A.; Cordonnier, Catherine; Donnelly, J. Peter; Heinz, Werner J.; Jones, Brian; Klingspor, Lena; Loeffler, Juergen; Rogers, Thomas R.; Rowbotham, Eleanor; White, P. Lewis; Cruciani, Mario

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Characterization of Food Chain Clostridioides difficile Isolates in Terms of Ribotype and Antimicrobial Resistance

MICROORGANISMS

IF4.2

2023-05-16

OAAI

Marcos, Pilar; Doyle, Aoife; Whyte, Paul; Rogers, Thomas R.; McElroy, Maire; Fanning, Seamus; Frias, Jesus; Bolton, Declan

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Diagnostic Performance of Xpert MTB/RIF Ultra Compared with Predecessor Test, Xpert MTB/RIF, in a Low TB Incidence Setting: a Retrospective Service Evaluation

MICROBIOLOGY SPECTRUM

IF3.8

2022-06-29

OAAI

Mansfield, Mary; McLaughlin, Anne Marie; Roycroft, Emma; Montgomery, Lorraine; Keane, Joseph; Fitzgibbon, Margaret M.; Rogers, Thomas R.

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Molecular mechanisms of acquired antifungal drug resistance in principal fungal pathogens and EUCAST guidance for their laboratory detection and clinical implications

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2022-06-15

OAAI

Rogers, Thomas R.; Verweij, Paul E.; Castanheira, Mariana; Dannaoui, Eric; White, P. Lewis; Arendrup, Maiken Cavling

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Human and Porcine Transmission of Clostridioides difficile Ribotype 078, Europe

EMERGING INFECTIOUS DISEASES

IF6.6

2021-09-01

OAAI

Moloney, Geraldine; Eyre, David W.; Mac Aogain, Micheal; McElroy, Maire C.; Vaughan, Alison; Peto, Tim E. A.; Crook, Derrick W.; Rogers, Thomas R.

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False detection of rifampicin resistance using Xpert® MTB/RIF Ultra assay due to an A451V mutation in Mycobacterium tuberculosis

JAC-ANTIMICROBIAL RESISTANCE

IF3.3

2021-08-11

OAAI

Fitzgibbon, Margaret M.; Roycroft, Emma; Sheehan, Gerard; Mc Laughlin, Anne-Marie; Quintyne, Keith Ian; Brabazon, Elaine; O'Meara, Mary; Flanagan, Peter R.; Seagar, A-Louise; Laurenson, Ian F.; Keane, Joseph; Rogers, Thomas R.

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Global guideline for the diagnosis and management of rare mould infections: an initiative of the European Confederation of Medical Mycology in cooperation with the International Society for Human and Animal Mycology and the American Society for Microbiology

LANCET INFECTIOUS DISEASES

IF31

2021-08-01

229

OAAI

Hoenigl, Martin; Salmanton-Garcia, Jon; Walsh, Thomas J.; Nucci, Marcio; Neoh, Chin Fen; Jenks, Jeffrey D.; Lackner, Michaela; Sprute, Rosanne; Al-Hatmi, Abdullah M. S.; Bassetti, Matteo; Carlesse, Fabianne; Freiberger, Tomas; Koehler, Philipp; Lehrnbecher, Thomas; Kumar, Anil; Prattes, Juergen; Richardson, Malcolm; Revankar, Sanjay; Slavin, Monica A.; Stemler, Jannik; Spiess, Birgit; Taj-Aldeen, Saad J.; Warris, Adilia; Woo, Patrick C. Y.; Young, Jo-Anne H.; Albus, Kerstin; Arenz, Dorothee; Arsic-Arsenijevic, Valentina; Bouchara, Jean-Philippe; Chinniah, Terrence Rohan; Chowdhary, Anuradha; de Hoog, G. Sybren; Dimopoulos, George; Duarte, Rafael F.; Hamal, Petr; Meis, Jacques F.; Mfinanga, Sayoki; Queiroz-Telles, Flavio; Patterson, Thomas F.; Rahav, Galia; Rogers, Thomas R.; Rotstein, Coleman; Wahyuningsih, Retno; Seidel, Danila; Cornely, Oliver A.

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Overcoming the Challenges of Pyrazinamide Susceptibility Testing in Clinical Mycobacterium tuberculosis Isolates

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IF4.5

2021-07-16

OAAI

Mok, Simone; Roycroft, Emma; Flanagan, Peter R.; Montgomery, Lorraine; Borroni, Emanuele; Rogers, Thomas R.; Fitzgibbon, Margaret M.

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Taskforce report on the diagnosis and clinical management of COVID-19 associated pulmonary aspergillosis

INTENSIVE CARE MEDICINE

IF21.2

2021-06-23

115

OAAI

Verweij, Paul E.; Bruggemann, Roger J. M.; Azoulay, Elie; Bassetti, Matteo; Blot, Stijn; Buil, Jochem B.; Calandra, Thierry; Chiller, Tom; Clancy, Cornelius J.; Cornely, Oliver A.; Depuydt, Pieter; Koehler, Philipp; Lagrou, Katrien; de Lange, Dylan; Lass-Florl, Cornelia; Lewis, Russell E.; Lortholary, Olivier; Liu, Peter-Wei Lun; Maertens, Johan; Nguyen, M. Hong; Patterson, Thomas F.; Rijnders, Bart J. A.; Rodriguez, Alejandro; Rogers, Thomas R.; Schouten, Jeroen A.; Wauters, Joost; van de Veerdonk, Frank L.; Martin-Loeches, Ignacio

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The largest prison outbreak of TB in Western Europe investigated using whole-genome sequencing

INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE

IF3.1

2021-06-01

PREAI

Roycroft, E.; Fitzgibbon, M. M.; Kelly, D. M.; Scully, M.; McLaughlin, A. M.; Flanagan, P. R.; Gordon, S. V.; Rogers, T. R.; Keane, J.; O'Meara, M.

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Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples

PLOS PATHOGENS

IF4.9

2021-03-31

OAAI

O'Brien, Caoimhe E.; Oliveira-Pacheco, Joao; O Cinneide, Eoin; Haase, Max A. B.; Hittinger, Chris Todd; Rogers, Thomas R.; Zaragoza, Oscar; Bond, Ursula; Butler, Geraldine

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The impact of anti-mould prophylaxis on Aspergillus PCR blood testing for the diagnosis of invasive aspergillosis

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2020-12-29

OAAI

Cruciani, M.; White, P. L.; Mengoli, C.; Loeffler, J.; Morton, C. O.; Klingspor, L.; Buchheidt, D.; Maertens, J.; Heinz, W. J.; Rogers, T. R.; Weinbergerova, B.; Warris, A.; Lockhart, D. E. A.; Jones, B.; Cordonnier, C.; Donnelly, J. P.; Barnes, R. A.

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Sex Steroids Induce Membrane Stress Responses and Virulence Properties in Pseudomonas aeruginosa (vol 11, e01774-20, 2020)

MBIO

IF4.7

2020-12-22

OAAI

Vidaillac, Celine; Yong, Valerie Fei Lee; Aschtgen, Marie-Stephanie; Qu, Jing; Yang, Shuowei; Xu, Guangfu; Seng, Zi Jing; Brown, Alexandra C.; Ali, Md Khadem; Jaggi, Tavleen K.; Sankaran, Jagadish; Foo, Yong Hwee; Righetti, Francesco; Nedumaran, Anu Maashaa; Mac Aogain, Micheal; Roizman, Dan; Richard, Jean-Alexandre; Rogers, Thomas R.; Toyofuku, Masanori; Luo, Dahai; Loh, Edmund; Wohland, Thorsten; Czarny, Bertrand; Horvat, Jay C.; Hansbro, Philip M.; Yang, Liang; Li, Liang; Normark, Staffan; Henriques-Normark, Birgitta; Chotirmall, Sanjay H.

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Sex Steroids Induce Membrane Stress Responses and Virulence Properties in Pseudomonas aeruginosa

MBIO

IF4.7

2020-10-27

OAAI

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Genomic Analysis of Mycobacterium abscessus Complex Isolates Collected in Ireland between 2006 and 2017

JOURNAL OF CLINICAL MICROBIOLOGY

IF5.4

2020-06-24

OAAI

Redondo, Natalia; Mok, Simone; Montgomery, Lorraine; Flanagan, Peter R.; McNamara, Eleanor; Smyth, Edmond G.; O'Sullivan, Niamh; Schaffer, Kirsten; Rogers, Thomas R.; Fitzgibbon, Margaret M.

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Review of influenza-associated pulmonary aspergillosis in ICU patients and proposal for a case definition: an expert opinion

INTENSIVE CARE MEDICINE

IF21.2

2020-06-22

298

OAAI

Verweij, Paul E.; Rijnders, Bart J. A.; Bruggemann, Roger J. M.; Azoulay, Elie; Bassetti, Matteo; Blot, Stijn; Calandra, Thierry; Clancy, Cornelius J.; Cornely, Oliver A.; Chiller, Tom; Depuydt, Pieter; Giacobbe, Daniele Roberto; Janssen, Nico A. F.; Kullberg, Bart-Jan; Lagrou, Katrien; Lass-Florl, Cornelia; Lewis, Russell E.; Liu, Peter Wei-Lun; Lortholary, Olivier; Maertens, Johan; Martin-Loeches, Ignacio; Nguyen, M. Hong; Patterson, Thomas F.; Rogers, Thomas R.; Schouten, Jeroen A.; Spriet, Isabel; Vanderbeke, Lore; Wauters, Joost; van de Veerdonk, Frank L.

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Research Directions