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Felix Y. Feng

university of california san francisco

109H-index
1.7KPaper Count
5.1WCitation Count
Published Papers 422
Publication Date
Genome-scale CRISPR screens identify PTGES3 as a direct modulator of androgen receptor function in advanced prostate cancer
err2025-11-05
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errHaolong Li; James E. Melnyk; Becky Xu Hua Fu; Raunak Shrestha; Meng Zhang; Martin Sjöström; Siyu Feng; Jasmine A. Anderson; Wanting Han; Lisa N. Chesner; Hyun Jin Shin; Tatyanah Farsh; Humberto J. Suarez; Seema Nath; Jonathan Chou; Rajdeep Das; Emily A. Egusa; Marsha Calvert; Audrey Kishishita; Abhilash Barpanda; Jun Zhu; Ashutosh Maheshwari; William S. Chen; Mohammed Alshalalfa; Aidan Winters; Junjie T. Hua; Tianyi Liu; Elai Davicioni; Arun P. Wiita; Bradley A. Stohr; Javed Siddiqui; Bo Huang; Eric J. Small; Kevan M. Shokat; Peter S. Nelson; David A. Quigley; Elizabeth V. Wasmuth; Luke A. Gilbert; Felix Y. Feng
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Analysis of cfDNA fragmentomics metrics and commercial targeted sequencing panels
err2025-10-14
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errKyle T. Helzer; Marina N. Sharifi; Jamie M. Sperger; Matthew R. Chrostek; Matthew L. Bootsma; Shannon R. Reese; Amy Taylor; Katie R. Kaufmann; Hannah Krause; Jennifer Schehr; Nan Sethakorn; David Kosoff; Christos E. Kyriakopoulos; Michael Bassetti; Grace Blitzer; John Floberg; Martin Sjöström; Andrew J. Armstrong; Himisha Beltran; Rana R. McKay; Felix Y. Feng; Ruth O’Regan; Kari B. Wisinski; Hamid Emamekhoo; Alex W. Wyatt; Joshua M. Lang; Shuang G. Zhao
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Tumor transcriptome-wide expression classifiers predict treatment sensitivity in advanced prostate cancers
errCell
IF42.5
err2025-08-26
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errEmily Grist; Peter Dutey-Magni; Marina A. Parry; Larissa Mendes; Ashwin Sachdeva; James A. Proudfoot; Anis A. Hamid; Mazlina Ismail; Sarah Howlett; Stefanie Friedrich; Lia DePaula Oliveira; Laura Murphy; Christopher Brawley; Oluwademilade Dairo; Sharanpreet Lall; Yang Liu; Daniel Wetterskog; Anna Wingate; Karolina Nowakowska; Leila Zakka; Claire L. Amos; Nafisah B. Atako; Victoria Wang; Hannah L. Rush; Robert J. Jones; Hing Leung; William R. Cross; Silke Gillessen; Chris C. Parker; Teresa Marafioti; Alfonso Urbanucci; Matthew Fittall; Edward M. Schaeffer; Daniel E. Spratt; David Waugh; Thomas Powles; Matthew R. Sydes; Felix Y. Feng; Daniel M. Berney; Mahesh K.B. Parmar; Noel W. Clarke; Elai Davicioni; Tamara L. Lotan; Christopher J. Sweeney; Louise C. Brown; Nicholas D. James; Gerhardt Attard
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Leveraging sequences missing from the human genome to diagnose cancer
err2025-08-21
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errIlias Georgakopoulos-Soares; Ofer Yizhar-Barnea; Ioannis Mouratidis; Candace S. Y. Chan; Michail Patsakis; Akshatha Nayak; Rachael Bradley; Mayank Mahajan; Jasmine Sims; Dianne Laboy Cintron; Ryder Easterlin; Julia S. Kim; Emmalyn Chen; Geovanni Pineda; Guillermo E. Parada; John S. Witte; Christopher A. Maher; Felix Feng; Ioannis Vathiotis; Nikolaos Syrigos; Emmanouil Panagiotou; Andriani Charpidou; Konstantinos Syrigos; Jocelyn Chapman; Mark Kvale; Martin Hemberg; Nadav Ahituv
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Long term results of NRG Oncology RTOG 9601, a randomized trial of radiation with or without anti-androgens (AAT) in patients receiving salvage prostate bed radiation therapy post prostatectomy
err2025-08-05
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PREAI
errHimanshu R. Lukka; Stephanie L. Pugh; William U. Shipley; Pierre P. Major; Oliver Sartor; Ian S. Dayes; Jean-Paul Bahary; Jason A. Efstathiou; Thomas M. Pisansky; Kenneth L. Zeitzer; Colleen A.F. Lawton; Robert T. Dess; Andrew S. Camarata; Alexander G. Balogh; Luis Souhami; Seth A. Rosenthal; J. Daniel Pennington; Wendy F. Seiferheld; Felix Y. Feng; Howard M. Sandler
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Transcriptomic Analysis of Localized High-risk Prostate Cancer Improves Prognostication and Identifies Benefit from Adding Docetaxel to Definitive Radiotherapy with Androgen Suppression in the NRG Oncology/RTOG 0521 Phase 3 Trial
err2025-07-17
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errRyan M. Phillips; James A. Proudfoot; Elai Davicioni; Yang Liu; Daniel E. Spratt; Jeff M. Simko; Robert B. Den; Alan Pollack; Seth A. Rosenthal; A. Oliver Sartor; Christopher J. Sweeney; Gerhardt Attard; Leslie Longoria; Samir Patel; Michael W. Straza; Jason A. Efstathiou; Amit B. Shah; Karen E. Hoffman; Joseph P. Rodgers; Howard M. Sandler; Felix Y. Feng; Phuoc T. Tran
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Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer
err2025-07-07
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errAnbarasu Kumaraswamy; Ya-Mei Hu; Joel A. Yates; Chao Zhang; Eva Rodansky; Dhruv Khokhani; Diana Flores; Zhi Duan; Yi Zhang; Shaadi Tabatabaei; Rachel Slottke; Shangyuan Ye; Primo Lara; Adam Foye; Charles J. Ryan; David A. Quigley; Jiaoti Huang; Rahul Aggarwal; Robert E. Reiter; Max S. Wicha; Tomasz M. Beer; Matthew Rettig; Martin Gleave; Christopher P. Evans; Owen N. Witte; Joshua M. Stuart; George V. Thomas; Felix Y. Feng; Eric J. Small; Zheng Xia; Joshi J. Alumkal
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Impact of Gene Expression Classifier Testing on Adjuvant Treatment Following Radical Prostatectomy: The G-MINOR Prospective Randomized Cluster-crossover Trial
err2025-02-01
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PREAI
errMorgan, Todd M.; Daignault-Newton, Stephanie; Spratt, Daniel E.; Dunn, Rodney L.; Singhal, Udit; Okoth, Linda A.; Feng, Felix Y.; Johnson, Anna M.; Lane, Brian R.; Linsell, Susan; Ghani, Khurshid R.; Montie, James E.; Mehra, Rohit; Hollenbeck, Brent K.; Maatman, Thomas; Wojno, Kirk; Burks, Frank N.; Bekong, Daniel; Curry, Jon; Rodriguez, Paul; Kleer, Eduardo; Sarle, Richard; Miller, David C.; Cher, Michael L.
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Validation of an artificial intelligence-based prognostic biomarker in patients with oligometastatic Castration-Sensitive prostate cancer
err2025-01-01
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PREAI
errWang, Jarey H.; Deek, Matthew P.; Mendes, Adrianna A.; Song, Yang; Shetty, Amol; Bazyar, Soha; van der Eecken, Kim; Chen, Emmalyn; Showalter, Timothy N.; Royce, Trevor J.; Todorovic, Tamara; Huang, Huei-Chung; Houck, Scott A.; Yamashita, Rikiya; Kiess, Ana P.; Song, Daniel Y.; Lotan, Tamara; DeWeese, Theodore; Marchionni, Luigi; Ren, Lei; Sawant, Amit; Simone, Nicole; Berlin, Alejandro; Onal, Cem; Esteva, Andre; Feng, Felix Y.; Tran, Phuoc T.; Sutera, Philip; Ost, Piet
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Canonical androgen response element motifs are tumor suppressive regulatory elements in the prostate
err2024-12-13
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errChen, Xuanrong; Augello, Michael A.; Liu, Deli; Lin, Kevin; Hakansson, Alex; Sjostrom, Martin; Khani, Francesca; Deonarine, Lesa D.; Liu, Yang; Travascio-Green, Jaida; Wu, Jiansheng; Chan, Un In; Owiredu, Jude; Loda, Massimo; Feng, Felix Y.; Robinson, Brian D.; Davicioni, Elai; Sboner, Andrea; Barbieri, Christopher E.
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Stress testing deep learning models for prostate cancer detection on biopsies and surgical specimens
err2024-12-11
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errFlannery, Brennan T.; Sandler, Howard M.; Lal, Priti; Feldman, Michael D.; Santa-Rosario, Juan C.; Pathak, Tilak; Mirtti, Tuomas; Farre, Xavier; Correa, Rohann; Chafe, Susan; Shah, Amit; Efstathiou, Jason A.; Hoffman, Karen; Hallman, Mark A.; Straza, Michael; Jordan, Richard; Pugh, Stephanie L.; Feng, Felix; Madabhushi, Anant
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Genomic classifier performance in intermediate-risk prostate cancer: results from NRG Oncology/RTOG 0126 randomized phase 3 trial (vol 117, pg 370, 2023)
err2024-12-01
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PREAI
errSpratt, D. E.; Liu, V. Y. T.; Michalski, J.; Davicioni, E.; Berlin, A.; Simko, J. P.; Efstathiou, J. A.; Tran, P. T.; Sandler, H. M.; Hall, W. A.; Thompson, D. J. S.; Parliament, M. B.; Dayes, I. S.; Correa, R. J. M.; Robertson, J. M.; Gore, E. M.; Doncals, D. E.; Vigneault, E.; Souhami, L.; Karrison, T. G.; Feng, F. Y.
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Prognostic factors in post-prostatectomy salvage radiotherapy setting with and without hormonotherapy: An individual patient data analysis of randomized trials from ICECaP database
err2024-12-01
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errPommier, Pascal; Xie, Wanling; Ravi, Praful; Carrie, Christian; Dignam, James J.; Feng, Felix; Sargos, Paul; Sommer, Silke Gillessen; Spratt, Daniel E.; Tombal, Bertrand; Van Poppel, Hendrik; Sweeney, Christopher
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Transcription and DNA replication collisions lead to large tandem duplications and expose targetable therapeutic vulnerabilities in cancer
err2024-11-18
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PREAI
errYang, Yang; Badura, Michelle L.; O'Leary, Patrick C.; Delavan, Henry M.; Robinson, Troy M.; Egusa, Emily A.; Zhong, Xiaoming; Swinderman, Jason T.; Li, Haolong; Zhang, Meng; Kim, Minkyu; Ashworth, Alan; Feng, Felix Y.; Chou, Jonathan; Yang, Lixing
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Meta-analysis of Individual Patient-level Data for a Multimodal Artificial Intelligence Biomarker in High-risk Prostate Cancer: Results from Six NRG/RTOG Phase 3 Randomized Trials
err2024-10-01
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errSpratt, Daniel E.; Liu, Vinnie Y. T.; Jia, Angela Y.; Royce, Trevor J.; Sandler, Howard M.; Pugh, Stephanie L.; Tran, Phuoc T.; Feng, Felix Y.
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CDK12 loss drives prostate cancer progression, transcription-replication conflicts, and synthetic lethality with paralog CDK13
err2024-10-01
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errOAAI
errTien, Jean Ching-Yi; Luo, Jie; Chang, Yu; Zhang, Yuping; Cheng, Yunhui; Wang, Xiaoju; Yang, Jianzhang; Mannan, Rahul; Mahapatra, Somnath; Shah, Palak; Wang, Xiao-Ming; Todd, Abigail J.; Eyunni, Sanjana; Cheng, Caleb; Rebernick, Ryan J.; Xiao, Lanbo; Bao, Yi; Neiswender, James; Brough, Rachel; Pettitt, Stephen J.; Cao, Xuhong; Miner, Stephanie J.; Zhou, Licheng; Wu, Yi-Mi; Labanca, Estefania; Wang, Yuzhuo; Parolia, Abhijit; Cieslik, Marcin; Robinson, Dan R.; Wang, Zhen; Feng, Felix Y.; Chou, Jonathan; Lord, Christopher J.; Ding, Ke; Chinnaiyan, Arul M.
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External Validation of a Digital Pathology-based Multimodal Artificial Intelligence Architecture in the NRG/RTOG 9902 Phase 3 Trial
err2024-10-01
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errOAAI
errRoss, Ashley E.; Zhang, Jingbin; Huang, Huei-Chung; Yamashita, Rikiya; Keim-Malpass, Jessica; Simko, Jeffry P.; Devries, Sandy; Morgan, Todd M.; Souhami, Luis; Dobelbower, Michael C.; Mcginnis, L. Scott; Jones, Christopher U.; Dess, Robert T.; Zeitzer, Kenneth L.; Choi, Kwang; Hartford, Alan C.; Michalski, Jeff M.; Raben, Adam; Gomella, Leonard G.; Sartor, A. Oliver; Rosenthal, Seth A.; Sandler, Howard M.; Spratt, Daniel E.; Pugh, Stephanie L.; Mohamad, Osama; Esteva, Andre; Chen, Emmalyn; Schaeffer, Edward M.; Tran, Phuoc T.; Feng, Felix Y.
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Clinical cell-surface targets in metastatic and primary solid cancers
err2024-09-24
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errSharifi, Marina N.; Shi, Yue; Chrostek, Matthew R.; Callahan, S. Carson; Shang, Tianfu; Berg, Tracy J.; Helzer, Kyle T.; Bootsma, Matthew L.; Sjostrom, Martin; Josefsson, Andreas; Feng, Felix Y.; Huffman, Laura B.; Schulte, Chris; Blitzer, Grace C.; Sodji, Quaovi H.; Morris, Zachary S.; Ma, Vincent T.; Meimetis, Labros; Kosoff, David; Taylor, Amy K.; LeBeau, Aaron M.; Lang, Joshua M.; Zhao, Shuang G.
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Integrative identification of non-coding regulatory regions driving metastatic prostate cancer
err2024-09-01
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errWoo, Brian J.; Moussavi-Baygi, Ruhollah; Karner, Heather; Karimzadeh, Mehran; Yousefi, Hassan; Lee, Sean; Garcia, Kristle; Joshi, Tanvi; Yin, Keyi; Navickas, Albertas; Gilbert, Luke A.; Wang, Bo; Asgharian, Hosseinali; Feng, Felix Y.; Goodarzi, Hani
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Risk Stratification of Patients with Recurrence After Primary Treatment for Prostate Cancer: A Systematic Review
err2024-09-01
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PREAI
errWeiner, Adam B.; Kakani, Preeti; Armstrong, Andrew J.; Bossi, Alberto; Cornford, Philip; Feng, Felix; Kanabur, Pratik; Karnes, R. Jeffery; Mckay, Rana R.; Morgan, Todd M.; Schaeffer, Edward M.; Shore, Neal; Tree, Alison C.; Spratt, Daniel E.
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