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J

Joakim Lundeberg

kth royal institute of technology

90H-index
523Paper Count
4.5WCitation Count
Published Papers 178
Publication Date
Reading tumor ecosystems from routine histology
err2026-08-10
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PREAI
errLudvig Bergenstråhle; Joakim Lundeberg
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Human growth plates house resting zone sub-populations with features of quiescent stem cells
err2026-08-05
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errOAAI
errMahtab Avijgan; Ana R. López-Pérez; Leire Alonso Galicia; Jose G. Marchan-Alvarez; Laura Sudupe; Ruihan Zhou; Amal Nazaraliyev; Žaneta Andrusivová; Ludvig Larsson; Pâmella Miranda; Doste R. Mamand; Yunhan Zhao; Farasat Zaman; Hong Qian; Klas Blomgren; Felipe Prosper; Oscar P. B. Wiklander; Jesper N. Tegner; Joakim Lundeberg; Lars Sävendahl; Reza Mirzazadeh; David Gomez-Cabrero; Phillip T. Newton
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Publisher Correction: TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration
err2026-06-15
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errOAAI
errKeying Zhu; Yun Liu; Jin-Hong Min; Vijay Joshua; Jianing Lin; Yue Li; Judith C. Kreutzmann; Yuxi Guo; Wenlong Xia; Elyas Mohammadi; Melanie Pieber; Valerie Suerth; Yiming Xia; Zaneta Andrusivova; Jean-Philippe Hugnot; Shigeaki Kanatani; Per Uhlén; Joakim Lundeberg; Xiaofei Li; Stephen P. J. Fancy; Heela Sarlus; Robert A. Harris; Harald Lund
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Rare regulatory mutations disrupt mesenchymal molecular programs driving endocardial cushion formation in bicuspid aortic valve
err2026-04-18
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errOAAI
errArtemy Zhigulev; Andrey Buyan; Enikő Lázár; Nikita Gryzunov; Karin Lång; Raphaël Mauron; Vladimir Nozdrin; Rapolas Spalinskas; Sailendra Pradhananga; Madeleine Petersson Sjögren; Doreen Schwochow; Anders Franco-Cereceda; Joakim Lundeberg; Ivan V. Kulakovskiy; Per Eriksson; Hanna M. Björck; Pelin Sahlén
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Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies
err2026-01-07
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errOAAI
errEleanor C. Williams; Lovisa Franzén; Martina Olsson Lindvall; Gregory Hamm; Steven Oag; Muntasir Mamun Majumder; James Denholm; Azam Hamidinekoo; Javier Escudero Morlanes; Marco Vicari; Joakim Lundeberg; Laura Setyo; Trevor M. Godfrey; Livia S. Eberlin; Aleksandr Zakirov; Jorrit J. Hornberg; Marianna Stamou; Patrik L. Ståhl; Anna Ollerstam; Jennifer Y. Tan; Irina Mohorianu
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TGFβ signaling mediates microglial resilience to spatiotemporally restricted myelin degeneration
err2026-01-02
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errOAAI
errKeying Zhu; Yun Liu; Jin-Hong Min; Vijay Joshua; Jianing Lin; Yue Li; Judith C. Kreutzmann; Yuxi Guo; Wenlong Xia; Elyas Mohammadi; Melanie Pieber; Valerie Suerth; Yiming Xia; Zaneta Andrusivova; Jean-Philippe Hugnot; Shigeaki Kanatani; Per Uhlén; Joakim Lundeberg; Xiaofei Li; Stephen P. J. Fancy; Heela Sarlus; Robert A. Harris; Harald Lund
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Serial Spatial Transcriptomes Reveal Regulatory Transitions in Maize Leaf Development
err2026-01-01
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errOAAI
errWu, Chi-Chih; Larsson, Ludvig; Hsieh, Kun-Ting; Yu, Chun-Ping; Chen, Yi-Hua; Ding, Kai-Hsuan; Yang, Ho-Chun; Lundeberg, Joakim; Ho, Chin-Min Kimmy; Wu, Shu-Hsing; Lu, Mei-Yeh Jade; Li, Wen-Hsiung
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Spatial single-cell atlas reveals regional variations in healthy and diseased human lung
err2025-11-05
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errOAAI
errAlexandra B. Firsova; Sergio Marco Salas; Louis B. Kuemmerle; Xesús M. Abalo; Alexandros Sountoulidis; Ludvig Larsson; Krishnaa T. Mahbubani; Jonas Theelke; Zaneta Andrusivova; Leire Alonso Galicia; Andreas Liontos; Tamás Balassa; Ferenc Kovacs; Peter Horvath; Yuexin Chen; Janine Gote-Schniering; Mircea-Gabriel Stoleriu; Jürgen Behr; Kerstin B. Meyer; Wim Timens; Herbert B. Schiller; Malte D. Luecken; Fabian J. Theis; Joakim Lundeberg; Mats Nilsson; Martijn C. Nawijn; Christos Samakovlis
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Spatial transcriptomics reveals an unexpected impact of tau and tau pathology on the expression of transthyretin
err2025-10-31
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errOAAI
errDeborah L. Croteau †; Jose Fernandez Navarro †; Thomas Comptdaer; Zaneta Andrusivova; Aleksandra Jurek; Eliette Bonnefoy; Luc Buée; Vilhelm A. Bohr; Joakim Lundeberg; Marie-Christine Galas
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Spatiotemporal gene expression and cellular dynamics of the developing human heart
err2025-10-29
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errOAAI
errEnikő Lázár; Raphaël Mauron; Žaneta Andrusivová; Julia Foyer; Mengxiao He; Ludvig Larsson; Nick Shakari; Sergio Marco Salas; Christophe Avenel; Sanem Sariyar; Jan Niklas Hansen; Marco Vicari; Paulo Czarnewski; Emelie Braun; Xiaofei Li; Olaf Bergmann; Christer Sylvén; Emma Lundberg; Sten Linnarsson; Mats Nilsson; Erik Sundström; Igor Adameyko; Joakim Lundeberg
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Spatial architecture of development and disease
err2025-09-30
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PREAI
errEnikő Lázár; Joakim Lundeberg
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Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data
err2025-09-09
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errOAAI
errTianyi Li; Qiao Yang; Balazs Acs; Emmanouil G. Sifakis; Hosein Toosi; Camilla Engblom; Kim Thrane; Qirong Lin; Jeff E. Mold; Wenwen Sun; Ceren Boyaci; Sanna Steen; Jonas Frisén; Jens Lagergren; Joakim Lundeberg; Xinsong Chen; Johan Hartman
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In-depth patient-specific analysis of tumor heterogeneity in melanoma brain metastasis: Insights from spatial transcriptomics and multi-region bulk sequencing
err2025-07-15
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PREAI
errNidhi Sharma; Jana Rájová; Georgios Mermelekas; Kim Thrane; Joakim Lundeberg; Alia Shamikh; Sofi Vikström; Haris Babačić; Margret Jensdottir; Janne Lehtiö; Maria Pernemalm; Hanna Eriksson
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MEA-seqX: High-Resolution Profiling of Large-Scale Electrophysiological and Transcriptional Network Dynamics
err2025-04-30
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errOAAI
errEmery, BA; Hu, X; Klütsch, D; Khanzada, S; Larsson, L; Dumitru, I; Frisén, J; Lundeberg, J; Kempermann, G; Amin, H
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Spatial transcriptomics reveals substantial heterogeneity in triple-negative breast cancer with potential clinical implications
err2024-11-26
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errOAAI
errWang, Xiaoxiao; Venet, David; Lifrange, Frederic; Larsimont, Denis; Rediti, Mattia; Stenbeck, Linnea; Dupont, Floriane; Rouas, Ghizlane; Garcia, Andrea Joaquin; Craciun, Ligia; Buisseret, Laurence; Ignatiadis, Michail; Carausu, Marcela; Bhalla, Nayanika; Masarapu, Yuvarani; Villacampa, Eva Gracia; Franzen, Lovisa; Saarenpaa, Sami; Kvastad, Linda; Thrane, Kim; Lundeberg, Joakim; Rothe, Francoise; Sotiriou, Christos
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snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
err2024-10-16
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errOAAI
errWang, Taopeng; Roach, Michael J.; Harvey, Kate; Morlanes, Javier Escudero; Kiedik, Beata; Al-Eryani, Ghamdan; Greenwald, Alissa; Kalavros, Nikolaos; Dezem, Felipe Segato; Ma, Yuling; Pita-Juarez, Yered H.; Wise, Kellie; Degletagne, Cyril; Elz, Anna; Hadadianpour, Azi; Johanneson, Jack; Pakiam, Fiona; Ryu, Heeju; Newell, Evan W.; Tonon, Laurie; Kohlway, Andrew; Drennon, Tingsheng; Abousoud, Jawad; Stott, Ryan; Lund, Paul; Durruthy, Jens; Vallejo, Andres F.; Li, Wenyan; Salomon, Robert; Kaczorowski, Dominik; Warren, Joanna; Butler, Lisa M.; O'Toole, Sandra; Plummer, Jasmine; Vlachos, Ioannis S.; Lundeberg, Joakim; Swarbrick, Alexander; Martelotto, Luciano G.
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Host-pathogen interactions in the Plasmodium-infected mouse liver at spatial and single-cell resolution
err2024-08-19
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errOAAI
errHildebrandt, Franziska; Iturritza, Miren Urrutia; Zwicker, Christian; Vanneste, Bavo; Van Hul, Noemi; Semle, Elisa; Quin, Jaclyn; Pascini, Tales; Saarenpaa, Sami; He, Mengxiao; Andersson, Emma R.; Scott, Charlotte L.; Vega-Rodriguez, Joel; Lundeberg, Joakim; Ankarklev, Johan
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Spatial landscapes of cancers: insights and opportunities
err2024-07-23
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PREAI
errChen, Julia; Larsson, Ludvig; Swarbrick, Alexander; Lundeberg, Joakim
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A community effort to track commercial single-cell and spatial 'omic technologies and business trends
err2024-07-17
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PREAI
errDe Jonghe, Joachim; Opzoomer, James W.; Vilas-Zornoza, Amaia; Crane, Peter; Nilges, Benedikt S.; Vicari, Marco; Lee, Hower; Lara-Astiaso, David; Gross, Torsten; Morf, Joerg; Schneider, Kim; Cudini, Juliana; Ramos-Mucci, Lorenzo; Mooijman, Dylan; Tiklova, Katarina; Salas, Sergio Marco; Langseth, Christoffer Mattsson; Kashikar, Nachiket D.; Roberts, Charles E. S.; Lundeberg, Joakim; Nilsson, Mats; Shalek, Alex K.; Cribbs, Adam P.; Taylor-King, Jake P.
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Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis
err2024-07-01
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errOAAI
errFranzen, Lovisa; Lindvall, Martina Olsson; Huhn, Michael; Ptasinski, Victoria; Setyo, Laura; Keith, Benjamin P.; Collin, Astrid; Oag, Steven; Volckaert, Thomas; Borde, Annika; Lundeberg, Joakim; Lindgren, Julia; Belfield, Graham; Jackson, Sonya; Ollerstam, Anna; Stamou, Marianna; Stahl, Patrik L.; Hornberg, Jorrit J.
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