David M.J. Lilley - Publications, H-index & Citations

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David M.J. Lilley

University of Dundee

82H-index

499Paper Count

2.4WCitation Count

Published Papers 138

Publication Date

Site-specific ribozyme-mediated alkylation of DNA substrates

Nucleic Acids Research

IF13.1

2026-04-13

PREAI

He, Yuanlin; Wilson, Timothy J.; Deng, Jie; Luo, Yuhang; Yan, Kaizhou; Xie, Yuting; Lilley, David M. J.; Huang, Lin

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Some general principles of riboswitch structure and interactions with small-molecule ligands

QUARTERLY REVIEWS OF BIOPHYSICS

IF5.3

2025-05-28

PREAI

Huang, Lin; Lilley, David M. J.

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A general strategy for engineering GU base pairs to facilitate RNA crystallization

NUCLEIC ACIDS RESEARCH

IF13.1

2024-12-26

OAAI

Ren, Yangyi; Lin, Xiaowei; Liao, Wenjian; Peng, Xuemei; Deng, Jie; Zhang, Zhe; Zhan, Jian; Zhou, Yaoqi; Westhof, Eric; Lilley, David M. J.; Wang, Jia; Huang, Lin

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The Role of General Acid Catalysis in the Mechanism of an Alkyl Transferase Ribozyme

ACS CATALYSIS

IF13.1

2024-10-02

OAAI

Wilson, Timothy J.; McCarthy, Erika; Ekesan, Solen; Giese, Timothy J.; Li, Nan-Sheng; Huang, Lin; Piccirilli, Joseph A.; York, Darrin M.; Lilley, David M. J.

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The structure and catalytic mechanism of a pseudoknot-containing hammerhead ribozyme

NATURE COMMUNICATIONS

IF15.7

2024-08-05

OAAI

Zhan, Xuelin; Wilson, Timothy J.; Li, Zhenzhen; Zhang, Jingjing; Yang, Yili; Lilley, David M. J.; Liu, Yijin

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Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level

NUCLEIC ACIDS RESEARCH

IF13.1

2023-07-31

OAAI

Liao, Ting-Wei; Huang, Lin; Wilson, Timothy J.; Ganser, Laura R.; Lilley, David M. J.; Ha, Taekjip

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Structure and ion-dependent folding of k-junctions

RNA

IF5

2023-06-13

OAAI

Li, Mengxiao; Deng, Jie; Peng, Xuemei; Wang, Jia; Wilson, Timothy J.; Huang, Lin; Lilley, David M. J.

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Biochemical and mechanistic analysis of the cleavage of branched DNA by human ANKLE1

NUCLEIC ACIDS RESEARCH

IF13.1

2023-05-22

OAAI

Freeman, Alasdair D. J.; Declais, Anne-Cecile; Wilson, Timothy J.; Lilley, David M. J.

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Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology

NUCLEIC ACIDS RESEARCH

IF13.1

2023-04-18

OAAI

McCarthy, Erika; Ekesan, Soelen; Giese, Timothy J.; Wilson, Timothy J.; Deng, Jie; Huang, Lin; Lilley, David M. J.; York, Darrin M.

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Characterization of a Holliday junction-resolving enzyme from Schizosaccharomyces pombe

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-29

OAAI

White, MF; Lilley, DMJ

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Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets

NUCLEIC ACIDS RESEARCH

IF13.1

2023-02-25

OAAI

Peng, Xuemei; Liao, Wenjian; Lin, Xiaowei; Lilley, David M. J.; Huang, Lin

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Search and processing of Holliday junctions within long DNA by junction-resolving enzymes

NATURE COMMUNICATIONS

IF15.7

2022-10-07

OAAI

Kaczmarczyk, Artur P.; Declais, Anne-Cecile; Newton, Matthew D.; Boulton, Simon J.; Lilley, David M. J.; Rueda, David S.

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Ribocentre: a database of ribozymes

NUCLEIC ACIDS RESEARCH

IF13.1

2022-09-30

OAAI

Deng, Jie; Shi, Yaohuang; Peng, Xuemei; He, Yuanlin; Chen, Xiaoxue; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Huang, Yuanyin; Jiang, Taijiao; Lilley, David M. J.; Miao, Zhichao; Huang, Lin

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Structure and mechanism of a methyltransferase ribozyme (vol 18, pg 556, 2022)

NATURE CHEMICAL BIOLOGY

IF13.7

2022-06-06

OAAI

Deng, Jie; Wilson, Timothy J.; Wang, Jia; Peng, Xuemei; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Lilley, David M. J.; Huang, Lin

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Structure and mechanism of a methyltransferase ribozyme

NATURE CHEMICAL BIOLOGY

IF13.7

2022-03-17

OAAI

Deng, Jie; Wilson, Timothy J.; Wang, Jia; Peng, Xuemei; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Lilley, David M. J.; Huang, Lin

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Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules

NUCLEIC ACIDS RESEARCH

IF13.1

2021-05-12

OAAI

Huang, Lin; Liao, Xinli; Li, Mengxiao; Wang, Jia; Peng, Xuemei; Wilson, Timothy J.; Lilley, David M. J.

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The potential versatility of RNA catalysis

WILEY INTERDISCIPLINARY REVIEWS-RNA

IF4.8

2021-05-05

OAAI

Wilson, Timothy J.; Lilley, David M. J.

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Crystal structure and ligand-induced folding of the SAM/SAH riboswitch

NUCLEIC ACIDS RESEARCH

IF13.1

2020-06-10

OAAI

Huang, Lin; Liao, Ting-Wei; Wang, Jia; Ha, Taekjip; Lilley, David M. J.

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RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

RNA

IF5

2020-05-05

103

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Boniecki, Michal J.; Bujnicki, Janusz; Chen, Shi-Jie; Cheng, Clarence Yu; Cheng, Yi; Chou, Fang-Chieh; Das, Rhiju; Dokholyan, Nikolay, V; Ding, Feng; Geniesse, Caleb; Jiang, Yangwei; Joshi, Astha; Krokhotin, Andrey; Magnus, Marcin; Mailhot, Olivier; Major, Francois; Mann, Thomas H.; Piatkowski, Pawel; Pluta, Radoslaw; Popenda, Mariusz; Sarzynska, Joanna; Sun, Lizhen; Szachniuk, Marta; Tian, Siqi; Wang, Jian; Wang, Jun; Watkins, Andrew M.; Wiedemann, Jakub; Xiao, Yi; Xu, Xiaojun; Yesselman, Joseph D.; Zhang, Dong; Zhang, Yi; Zhang, Zhenzhen; Zhao, Chenhan; Zhao, Peinan; Zhou, Yuanzhe; Zok, Tomasz; Zyla, Adriana; Ren, Aiming; Batey, Robert T.; Golden, Barbara L.; Huang, Lin; Lilley, David M.; Liu, Yijin; Patel, Dinshaw J.; Westhof, Eric

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Functional organization of box C/D RNA-guided RNA methyltransferase

NUCLEIC ACIDS RESEARCH

IF13.1

2020-04-16

OAAI

Yang, Zuxiao; Wang, Jiayin; Huang, Lin; Lilley, David M. J.; Ye, Keqiong

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Research Directions