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Evolutionary and immune microenvironment dynamics during neoadjuvant treatment of esophageal adenocarcinoma Barroux, Melissa; Househam, Jacob; Lakatos, Eszter; Ronel, Tahel; Baker, Ann-Marie; Salie, Henrike; Mossner, Maximilian; Smith, Kane; Kimberley, Chris; Nowinski, Salpie; Berner, Alison; Gunasri, Vinaya; Borgmann, Martin; Liffers, Sven; Jansen, Marnix; Caravagna, Giulio; Steiger, Katja; Slotta-Huspenina, Julia; Weichert, Wilko; Zapata, Luis; Giota, Eleftheria; Lorenzen, Sylvie; Alberstmeier, Markus; Chain, Benny; Friess, Helmut; Bengsch, Bertram; Schmid, Roland M.; Siveke, Jens T.; Quante, Michael; Graham, Trevor A. Share Save
Low-coverage whole genome sequencing of low-grade dysplasia strongly predicts advanced neoplasia risk in ulcerative colitis Al Bakir, Ibrahim; Curtius, Kit; Cresswell, George D.; Grant, Heather E.; Nasreddin, Nadia; Smith, Kane; Nowinski, Salpie; Guo, Qingli; Belnoue-Davis, Hayley L.; Fisher, Jennifer; Clarke, Theo; Kimberley, Christopher; Mossner, Maximilian; Dunne, Philip D.; Loughrey, Maurice B.; Speight, Ally; East, James E.; Wright, Nicholas A.; Rodriguez-Justo, Manuel; Jansen, Marnix; Moorghen, Morgan; Baker, Ann-Marie; Leedham, Simon J.; Hart, Ailsa L.; Graham, Trevor A. Share Save
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The Stratified Medicine Paediatrics programme for cancers of childhood: Cell free DNA and serial tumour sequencing identifies subtype specific evolution and epigenetic states George, Sally L.; Lynn, Claire; Stankunaite, Reda; Hughes, Debbie; Chalker, Jane; Ahmed, Saira Waqar; Oostveen, Minou; Proszek, Paula; Yuan, Lina; Shaikh, Ridwan; Jamal, Sabri; Tall, Jennifer; Shipley, Janet; Tweddle, Deborah; Marshall, Lynley; Jones, Chris; Gatz, Susanne; Vedi, Aditi; Angelini, Paola; Anderson, John; Cresswell, George; Graham, Trevor A.; Al-Lazikani, Bissan; Kearns, Pamela; Hutchinson, J. Ciaran; Hargrave, Darren; Jacques, Thomas; Hubank, Michael; Sottoriva, Andrea; Chesler, Louis Share Save
Dynamic Prediction of Advanced Colorectal Neoplasia in Inflammatory Bowel Disease Wijnands, Anouk M.; de Vries, Bas B. L. Penning; Lutgens, Maurice W. M. D.; Bakhshi, Zeinab; Al Bakir, Ibrahim; Beaugerie, Laurent; Bernstein, Charles N.; Choi, Ryan Chang-ho; Coelho-Prabhu, Nayantara; Graham, Trevor A.; Hart, Ailsa L.; ten Hove, Joren R.; Itzkowitz, Steven H.; Kirchgesner, Julien; Mooiweer, Erik; Shaffer, Seth R.; Shah, Shailja C.; Elias, Sjoerd G.; Oldenburg, Bas Share Save
Homopolymer switches mediate adaptive mutability in mismatch repair-deficient colorectal cancer Kayhanian, Hamzeh; Cross, William; van der Horst, Suzanne E. M.; Barmpoutis, Panagiotis; Lakatos, Eszter; Caravagna, Giulio; Zapata, Luis; Van Hoeck, Arne; Middelkamp, Sjors; Litchfield, Kevin; Steele, Christopher; Waddingham, William; Patel, Dominic; Milite, Salvatore; Jin, Chen; Baker, Ann-Marie; Alexander, Daniel C.; Khan, Khurum; Hochhauser, Daniel; Novelli, Marco; Werner, Benjamin; van Boxtel, Ruben; Hageman, Joris H.; Buissant des Amorie, Julian R.; Linares, Josep; Ligtenberg, Marjolijn J. L.; Nagtegaal, Iris D.; Lacle, Miangela M.; Moons, Leon M. G.; Brosens, Lodewijk A. A.; Pillay, Nischalan; Sottoriva, Andrea; Graham, Trevor A.; Rodriguez-Justo, Manuel; Shiu, Kai-Keen; Snippert, Hugo J. G.; Jansen, Marnix Share Save
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Evolutionary and immune microenvironment dynamics determine response to neoadjuvant treatment of oesophageal adenocarcinoma Barroux, M.; Househam, J.; Lakatos, E.; Ronel, T.; Baker, A-M.; Salie, H.; Mossner, M.; Jansen, M.; Caravagna, G.; Steiger, K.; Slotta-Huspenina, J.; Weichert, W.; Alberstmeier, M.; Chain, B.; Friess, H.; Bengsch, B.; Schmid, R.; Siveke, J. T.; Quante, M.; Graham, T. Share Save
Profiling of Copy Number Alterations Using Low-Coverage Whole-Genome Sequencing Informs Differential Diagnosis and Prognosis in Primary Cutaneous Follicle Center Lymphoma Batai, Bence; Kiss, Laura; Varga, Luca; Nagy, Akos; Househam, Jacob; Baker, Ann-Marie; Laszlo, Tamas; Udvari, Anna; Horvath, Robert; Nagy, Tibor; Csomor, Judit; Szakonyi, Jozsef; Schneider, Tamas; Graham, Trevor A.; Alpar, Donat; Fitzgibbon, Jude; Szepesi, Agota; Bodor, Csaba Share Save
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Large-scale, low-cost, and accurate measurement of cancer evolutionary dynamics from clinical patient samples Gabbutt, Calum; Duran-Ferrer, Marti; Grant, Heather; Mallo, Diego; Nadeu, Ferran; Househam, Jacob; Villamor, Neus; Krali, Olga; Nordlund, Jessica; Zenz, Thorsten; Campo, Elias; Lopez-Guillermo, Armando; Fitzgibbon, Jude; Barnes, Chris P.; Shibata, Darryl; Martin-Subero, Jose I.; Graham, Trevor A. Share Save
FUME-TCRseq Enables Sensitive and Accurate Sequencing of the T-cell Receptor from Limited Input of Degraded RNA Baker, Ann-Marie; Nageswaran, Gayathri; Nenclares, Pablo; Ronel, Tahel; Smith, Kane; Kimberley, Christopher; Lacle, Miangela M.; Bhide, Shreerang; Harrington, Kevin J.; Melcher, Alan; Rodriguez-Justo, Manuel; Chain, Benny; Graham, Trevor A. Share Save
Poor Diagnostic Reproducibility in the Identification of Nonconventional Dysplasia in Colitis Impacts the Application of Histologic Stratification Tools Nasreddin, Nadia; Jansen, Marnix; Loughrey, Maurice B.; Wang, Lai Mun; Koelzer, Viktor H.; Rodriguez-Justo, Manuel; Novelli, Marco; Fisher, Jennifer; Brown, Matthew W.; Al Bakir, Ibrahim; Hart, Ailsa L.; Dunne, Philip; Graham, Trevor A.; Leedham, Simon J. Share Save
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