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Nicola Waddell

QIMR Berghofer Medical Research Institute

81H-index
597Paper Count
5.0WCitation Count
Published Papers 119
Publication Date
Enhanced measures of neoantigenicity capture unique tumor-immune interactions across primary melanoma subtypes
err2026-05-26
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errEva R. Shteinman; Grace H. Attrill; Nigel G. Maher; Kiran Gnana; Venkateswar Addala; Yizhe Mao; Umaimainthan Palendira; Jordan W. Conway; Andrew J. Colebatch; Nicola Waddell; Nicholas K. Hayward; John V. Pearson; Georgina V. Long; Richard A. Scolyer; James S. Wilmott; Ismael A. Vergara
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Whole genome sequencing in oesophageal adenocarcinoma unmasks potential precision therapies
err2026-05-25
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errSowmya Sharma; Ho Yi Wong; Rebecca L Johnston; Lambros T Koufariotis; Scott Wood; Georgina Hollway; Lauren G Aoude; Aimee L Davidson; John V Pearson; Frank P Lin; Andrew P Barbour; Nicola Waddell
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Explainable machine learning identifies features and thresholds predictive of immunotherapy response
err2026-05-23
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errKhoa A. Tran; Venkateswar Addala; Lambros T. Koufariotis; Jia Zhang; Scott Wood; Conrad Leonard; Lotte L. Hoeijmakers; Christian U. Blank; Mireia Crispin-Ortuzar; Elizabeth D. Williams; Olga Kondrashova; John V. Pearson; Nicola Waddell
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Cancer genome standards for long-read sequencing using cancer cell line mixtures
err2026-04-03
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errJia Zhang; Ho Yi Wong; Lingchen Liu; Lambros T Koufariotis; Scott Wood; Nadine Fitzpatrick; Jenny Quiatchon; Paul Collins; John V Pearson; Nicola Waddell
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Multi-omics reveals key molecular and cellular features of advanced small cell lung cancers associated with distinct therapeutic opportunities
err2026-03-17
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errKatia Nones; Vanessa Lakis; Andrew J. Dalley; Kimberley Ryan; Haarika Chittoory; Kaltin Ferguson; Kate Fitzgerald; Felicity Newell; Lambros T. Koufariotis; Farzad Bashirzadeh; Jung Hwa Son; Mahendra Singh; Lakshmy Nandakumar; David Fairbairn; Margaret Cummings; Daniel Steinfort; Jemma J. Christie; Matthew Gibney; Jonathan P. Williamson; Andrew Pattison; Louise McIntosh; Carl Pahoff; Phan Tien Nguyen; Jelena Solujic; Michael Brown; Scott Twaddell; David Arnold; Christopher Grainge; Shailendra Gune; Oliver Holmes; Conrad Leonard; Scott Wood; John V. Pearson; Sunil R. Lakhani; Peter T. Simpson; Nicola Waddell; David Fielding
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Chromosomal instability shapes the tumor microenvironment of esophageal adenocarcinoma via a cGAS–chemokine–myeloid axis
err2026-03-11
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errBruno Beernaert; Rose L. Jady-Clark; Parin Shah; Erik Ramon-Gil; Nora M. Lawson; Zack D. Brodtman; Somnath Tagore; Frederik Stihler; Alfie S. Carter; Shannique Clarke; Tong Liu; Winston M. Zhu; Juliet E. Martin; Erkin Erdal; Alistair Easton; Leticia Campo; Molly Browne; Stephen Ash; Rabial Q. Raja; Nicola Waddell; Tom Crosby; Simon R. Lord; Derek A. Mann; Ignacio Melero; Carlos E. de Andrea; Andréa E. Tijhuis; Floris Foijer; Ester M. Hammond; Kadir C. Akdemir; Jack Leslie; Benjamin Izar; Eileen E. Parkes
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Mapping the Proteomic Landscape of Pancreatic Cancer: Prognostic Insights and Subtype Stratification
err2025-10-01
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errAref, Adel T.; Grealey, Jason; Pathan, Mohashin; Noor, Zainab; Anees, Asim; Azad, A. K. M.; Smith, Daniela Lee; Humphries, Erin M.; Bucio-Noble, Daniel; Koh, Jennifer M. S.; Sykes, Erin K.; Williams, Steven G.; Lyons, Ruth J.; Lucas, Natasha; Xavier, Dylan; Sahni, Sumit; Mittal, Anubhav; Samra, Jaswinder S.; Pearson, John V.; Waddell, Nicola; Kondrashova, Olga; Chou, Angela; Sioson, Loretta; Sheen, Amy; Hains, Peter G.; Robinson, Phillip J.; Zhong, Qing; Reddel, Roger R.; Gill, Anthony J.
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Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance (vol 40, pg 88, 2022)
err2025-02-01
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PREAI
errNewell, Felicity; da Silva, Ines Pires; Johansson, Peter A.; Menzies, Alexander M.; Wilmott, James S.; Addala, Venkateswar; Carlino, Matteo S.; Rizos, Helen; Nones, Katia; Edwards, Jarem J.; Lakis, Vanessa; Kazakoff, Stephen H.; Mukhopadhyay, Pamela; Ferguson, Peter M.; Leonard, Conrad; Koufariotis, Lambros T.; Wood, Scott; Blank, Christian U.; Thompson, John F.; Spillane, Andrew J.; Saw, Robyn P. M.; Shannon, Kerwin F.; Pearson, John, V; Mann, Graham J.; Hayward, Nicholas K.; Scolyer, Richard A.; Waddell, Nicola; Long, Georgina, V
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Human proximal tubular epithelial cell interleukin-1 receptor signalling triggers G2/M arrest and cellular senescence during hypoxic kidney injury
err2025-01-31
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errGiuliani, Kurt T. K.; Nag, Purba; Adams, Benjamin C.; Wang, Xiangju; Hong, Seokchan; Grivei, Anca; Johnston, Rebecca L.; Waddell, Nicola; Ho, Kenneth K. C.; Tian, Yilin; Khan, Muhammad Ali; Kim, Chang Seong; Ng, Monica S. Y.; Gobe, Glenda; Ungerer, Jacobus P. J.; Forbes, Josephine M.; Healy, Helen G.; Kassianos, Andrew J.
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Performance of somatic structural variant calling in lung cancer using Oxford Nanopore sequencing technology
err2024-09-30
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errLiu, Lingchen; Zhang, Jia; Wood, Scott; Newell, Felicity; Leonard, Conrad; Koufariotis, Lambros T.; Nones, Katia; Dalley, Andrew J.; Chittoory, Haarika; Bashirzadeh, Farzad; Son, Jung Hwa; Steinfort, Daniel; Williamson, Jonathan P.; Bint, Michael; Pahoff, Carl; Nguyen, Phan T.; Twaddell, Scott; Arnold, David; Grainge, Christopher; Simpson, Peter T.; Fielding, David; Waddell, Nicola; Pearson, John V.
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High-level tumour methylation of BRCA1 and RAD51C is required for homologous recombination deficiency in solid cancers
err2024-07-25
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errOAAI
errXu, Lijun; Liddell, Brett; Nesic, Ksenija; Geissler, Franziska; Ashwood, Lauren M.; Wakefield, Matthew J.; Scott, Clare L.; Waddell, Nicola; Kondrashova, Olga
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Clinically significant changes in genes and variants associated with epilepsy over time: implications for re-analysis
err2024-04-02
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errRobertson, Alan J.; Tran, Khoa A.; Bennett, Carmen; Sullivan, Clair; Stark, Zornitza; Vadlamudi, Lata; Waddell, Nicola
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Computational immunogenomic approaches to predict response to cancer immunotherapies
err2023-10-31
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errAddala, Venkateswar; Newell, Felicity; Pearson, John V.; Redwood, Alec; Robinson, Bruce W.; Creaney, Jenette; Waddell, Nicola
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Discrepancies in tumor mutation burden reporting from sequential endobronchial ultrasound transbronchial needle aspiration samples within single lymph node stations - brief report
err2023-10-19
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errFielding, David; Dalley, Andrew J.; Singh, Mahendra; Nandakumar, Lakshmy; Lakis, Vanessa; Chittoory, Haarika; Fairbairn, David; Patch, Ann-Marie; Kazakoff, Stephen H.; Ferguson, Kaltin; Bashirzadeh, Farzad; Bint, Michael; Pahoff, Carl; Son, Jung Hwa; Ryan, Kimberley; Hodgson, Alan; Sharma, Sowmya; Pearson, John V.; Waddell, Nicola; Lakhani, Sunil R.; Hartel, Gunter; Simpson, Peter T.; Nones, Katia
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The oesophageal adenocarcinoma tumour immune microenvironment dictates outcomes with different modalities of neoadjuvant therapy - results from the AGITG DOCTOR trial and the cancer evolution biobank
err2023-10-12
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errLonie, James M.; Brosda, Sandra; Bonazzi, Vanessa F.; Aoude, Lauren G.; Patel, Kalpana; Brown, Ian; Sharma, Sowmya; Lampe, Guy; Addala, Venkateswar; Koufariotis, Lambros T.; Wood, Scott; Waddell, Nicola; Dolcetti, Riccardo; Barbour, Andrew P.
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A Promising Biomarker for Predicting Recurrence in Patients with BRAF-Negative Melanoma
err2023-10-01
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errAoude, Lauren G.; Brosda, Sandra; Ng, Jessica; Lonie, James M.; Belle, Clemence J.; Patel, Kalpana; Koufariotis, Lambros T.; Wood, Scott; Atkinson, Victoria; Smithers, B. Mark; Pearson, John, V; Waddell, Nicola; Barbour, Andrew P.; Bonazzi, Vanessa F.
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Routine Molecular Profiling in Both Resectable and Unresectable Pancreatic Adenocarcinoma: Relevance of Cytologic Samples
err2023-10-01
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PREAI
errRedegalli, Miriam; Grassini, Greta; Magliacane, Gilda; Pecciarini, Lorenza; Lena, Marco Schiavo; Smart, Chanel E.; Johnston, Rebecca L.; Waddell, Nicola; Maestro, Roberta; Macchini, Marina; Orsi, Giulia; Petrone, Maria Chiara; Rossi, Gemma; Balzano, Gianpaolo; Falconi, Massimo; Arcidiacono, Paolo G.; Reni, Michele; Doglioni, Claudio; Cangi, Maria Giulia
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Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy
err2023-05-31
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errOAAI
errNaeini, Marjan M.; Newell, Felicity; Aoude, Lauren G.; Bonazzi, Vanessa F.; Patel, Kalpana; Lampe, Guy; Koufariotis, Lambros T.; Lakis, Vanessa; Addala, Venkateswar; Kondrashova, Olga; Johnston, Rebecca L.; Sharma, Sowmya; Brosda, Sandra; Holmes, Oliver; Leonard, Conrad; Wood, Scott; Xu, Qinying; Thomas, Janine; Walpole, Euan; Mai, G. Tao; Ackland, Stephen P.; Martin, Jarad; Burge, Matthew; Finch, Robert; Karapetis, Christos S.; Shannon, Jenny; Nott, Louise; Bohmer, Robert; Wilson, Kate; Barnes, Elizabeth; Zalcberg, John R.; Smithers, B. Mark; Simes, John; Price, Timothy; Gebski, Val; Nones, Katia; Watson, David I.; Pearson, John V.; Barbour, Andrew P.; Waddell, Nicola
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Generalising uncertainty improves accuracy and safety of deep learning analytics applied to oncology
err2023-05-06
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errMacDonald, Samual; Foley, Helena; Yap, Melvyn; Johnston, Rebecca L.; Steven, Kaiah; Koufariotis, Lambros T.; Sharma, Sowmya; Wood, Scott; Addala, Venkateswar; Pearson, John V.; Roosta, Fred; Waddell, Nicola; Kondrashova, Olga; Trzaskowski, Maciej
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A proteomic-based prognostic signature of pancreatic adenocarcinoma
err2023-04-04
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PREAI
errAref, Adel T.; Azad, A. K. M.; Anees, Asim; Pathan, Mohashin; Grealey, Jason; Smith, Daniela-Lee; Humphries, Erin M.; Bucio-Noble, Daniel; Koh, Jennifer M.; Sykes, Erin; Williams, Steven G.; Lyons, Ruth; Lucas, Natasha; Xavier, Dylan; Sahni, Sumit; Mittal, Anubhav; Samra, Jaswinder S.; Pearson, John V.; Waddell, Nicola; Hains, Peter G.; Robinson, Phil J.; Zhong, Qing; Reddel, Roger R.; Gill, Anthony J.
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