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The impact of breast radiotherapy on the tumor genome and immune ecosystem Schalck, Aislyn; Tran, Tuan; Li, Jianzhuo; Sei, Emi; Bai, Shanshan; Hu, Min; Lin, Jerome; Bright, Scott J.; Reddick, Samuel; Yang, Fei; Batra, Harsh; Contreras, Alejandro; Raso, Maria Gabriela; Stauder, Michael C.; Hoffman, Karen E.; Reddy, Jay P.; Nead, Kevin T.; Smith, Benjamin D.; Sawakuchi, Gabriel O.; Woodward, Wendy A.; Watowich, Stephanie S.; Litton, Jennifer K.; Bedrosian, Isabelle; Mittendorf, Elizabeth A.; Le-Petross, Huong; Navin, Nicholas E.; Shaitelman, Simona F. Share Save
The dynamic immune behavior of primary and metastatic ovarian carcinoma Stur, Elaine; Peng, Fuduan; Teng, Pang-ning; Bayraktar, Emine; Hu, Min; Corvigno, Sara; Brown, David J.; Lee, Sanghoon; Moore, Kathleen N.; Bateman, Nicholas W.; Darcy, Kathleen M.; Maxwell, George L.; P. Conrads, Thomas; Sahni, Nidhi; Vazquez-Garcia, Ignacio; Shah, Sohrab P.; Celestino, Joseph; D. Fleming, Nicole; Navin, Nicholas E.; Wang, Linghua Share Save
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Immune landscape of isocitrate dehydrogenase-stratified primary and recurrent human gliomas Gupta, Pravesh; Dang, Minghao; Oberai, Shivangi; Migliozzi, Simona; Trivedi, Rakesh; Kumar, Gayatri; Peshoff, Mekenzie; Milam, Nancy; Ahmed, Aml; Bojja, Krishna; Tran, Tuan M.; Gumin, Joy; Kamiya-Matsuoka, Carlos; Huse, Jason; Cox, Kathryn; Li, Jianzhuo; Shehwana, Huma; Sheth, Sameer A.; Saxon, Rodriguez; Baohua, Sun; Kerrigan, Brittany Parker; Maheshwari, Atul; Cuentas, Edwin Roger Parra; Navin, Nicholas E.; Heimberger, Amy B.; Lang, Frederick F.; Iavarone, Antonio; Clise-Dwyer, Karen; Wang, Linghua; Bhat, Krishna P. Share Save
A pan-cancer single-cell analysis of intratumoral copy number diversity and evolution Ye, Hanghui; McDonald, Thomas; Sei, Emi; Minussi, Darlan Conterno; Hu, Min; Tang, Chenling; Wang, Junke; Wang, Kaile; Casasent, Anna; Chen, Hui; Michor, Franziska; Navin, Nicholas Share Save
High throughput single cell simultaneous DNA and RNA sequencing identified cell-of-origin of breast cancer Wang, Kaile; Ye, Rui; Bai, Shanshan; Xiao, Zhenna; Yano, Lei; Li, Jianzhuo; Lin, Yiyun; Sei, Emi; Lin, Steven; Thompson, Alastair; Krishnamurthy, Savitri; Navin, Nicholas Share Save
Esophageal adenocarcinoma single-cell resolution ecotypes and subtypes mediate chemoradiation resistance Ye, Rui; Qiao, Yawei; Bai, Shanshan; Sei, Emi; Hu, Min; He, Jianzhong; Li, Nan; Wang, Yifan; Lopez, Pablo; Zhang, Wei; Ye, Fei; Weston, Brian; Coronel, Emmanuel; Ross, William; Ge, Phillip; Manoop, Bhutani; Navin, Nicholas; Lin, Steven Share Save
Decoding the archetypes and eco-hubs of triple-negative breast cancer in responses to chemotherapy Yan, Yun; Lin, Yiyun; Kumar, Tapsi; Bai, Shanshan; Li, Jianzhuo; Tran, Tuan; Hu, Min; Ravenberg, Elizabeth; Rauch, Maia; Clayborn, Alyson; Thompson, Alastair; Lim, Bora; Huo, Lei; Moulder, Stacy; Yam, Clinton; Navin, Nicholas Share Save
Normal breast tissues harbor rare populations of aneuploid epithelial cells Lin, Yiyun; Wang, Junke; Wang, Kaile; Bai, Shanshan; Thennavan, Aatish; Wei, Runmin; Yan, Yun; Li, Jianzhuo; Elgamal, Heba; Sei, Emi; Casasent, Anna; Rao, Mitchell; Tang, Chenling; Montalvan, Jessica; Nagi, Chandandeep; Winocour, Sebastrian; Lim, Bora; Thompson, Alastair; Navin, Nicholas Share Save
Macrospatial ecotype heterogeneity in early-stage breast cancer identified by spatial nucleus barcoding Wang, Kaile; Xiao, Zhenna; Lin, Yiyun; Wei, Runmin; Bai, Shanshan; Ye, Jie; Ye, Rui; Hu, Min; Thennavan, Aatish; Sei, Emi; Thompson, Alastair; Krishnamurthy, Savitri; Navin, Nicholas Share Save
Single cell DNA sequencing of BRAF treatment resistant anaplastic thyroid cancer Thennavan, Aatish; Tarabichi, Maxime; Wu, Per; Martin, Meghan; Dadu, Ramona; Cabanillas, Maria; Busaidy, Nafia; Henderson, Ying C.; Zafereo, Mark; Williams, Michelle D.; Lai, Stephen; Navin, Nicholas; Wang, Jennifer R. Share Save
Single-nucleotide variant calling in single-cell sequencing data with Monopogen Dou, Jinzhuang; Tan, Yukun; Kock, Kian Hong; Wang, Jun; Cheng, Xuesen; Tan, Le Min; Han, Kyung Yeon; Hon, Chung-Chau; Park, Woong-Yang; Shin, Jay W.; Jin, Haijing; Wang, Yujia; Chen, Han; Ding, Li; Prabhakar, Shyam; Navin, Nicholas; Chen, Rui; Chen, Ken Share Save
Anaplastic transformation in thyroid cancer revealed by single-cell transcriptomics Lu, Lina; Wang, Jennifer Rui; Henderson, Ying C.; Bai, Shanshan; Yang, Jie; Hu, Min; Shiau, Cheng-Kai; Pan, Timothy; Yan, Yuanqing; Tran, Tuan M.; Li, Jianzhuo; Kieser, Rachel; Zhao, Xiao; Wang, Jiping; Nurieva, Roza; Williams, Michelle D.; Cabanillas, Maria E.; Dadu, Ramona; Busaidy, Naifa Lamki; Zafereo, Mark; Navin, Nicholas; Lai, Stephen Y.; Gao, Ruli Share Save
Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing Truong, Danh D.; Lamhamedi-Cherradi, Salah-Eddine; Porter, Robert W.; Krishnan, Sandhya; Swaminathan, Jyothishmathi; Gibson, Amber; Lazar, Alexander J.; Livingston, J. Andrew; Gopalakrishnan, Vidya; Gordon, Nancy; Daw, Najat C.; Navin, Nicholas E.; Gorlick, Richard; Ludwig, Joseph A. Share Save
Dimeric p53 Mutant Elicits Unique Tumor-Suppressive Activities through an Altered Metabolic Program Gencel-Augusto, Jovanka; Su, Xiaoping; Qi, Yuan; Whitley, Elizabeth M.; Pant, Vinod; Xiong, Shunbin; Shah, Vrutant; Lin, Jerome; Perez, Encarnacion; Fiorotto, Marta L.; Mahmud, Iqbal; Jain, Abhinav K.; Lorenzi, Philip L.; Navin, Nicholas E.; Richie, Ellen R.; Lozano, Guillermina Share Save
Immunophenotyping of human brain tumors reveals myeloid cell mediated anti-glioma axis Gupta, Pravesh; Dang, Minghao; Oberai, Shivangi; Peshoff, Mekenzie; Milam, Nancy; Ahmed, Aml; Bojja, Krishna; Tran, Tuan M.; Cox, Kathryn; Shehwana, Huma; Matsuoka, Carlos Kamiya; Li, Jianzhuo; Gumin, Joy; Goldman, Alicia; Seth, Sameer A.; Maheshwari, Atul; Lang, Frederick F.; Navin, Nicholas E.; Heimberger, Amy B.; Dwyer, Karen Clise; Wang, Linghua; Bhat, Krishna P. Share Save
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