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E

Eric G. Pamer

university of chicago

114H-index
500Paper Count
5.9WCitation Count
Published Papers 158
Publication Date
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IDBac: an open-access web platform to identify bacteria and analyze relationships in culture collections using MALDI-TOF mass spectrometry
errNature Communications
IF15.7
err2026-07-23
err0
errOAAI
errNyssa K. Krull; Michael Strobel; Julia Saulog; Liana Zaroubi; Bruno S. Paulo; Mandisa Timba; Douglas R. Braun; Gabrielle Mingolelli; Jessia Raherisoanjato; Robert A. Shepherd; Abigail F. Scott; Carlo De Silva; Claire Fergusson; Zachary Daniel; Shailaja K. Pokharel; Sean Romanowski; Antonio Hernandez; Mónica Monge-Loría; Claire E. Dylla; Manasi M. Natu; Valentina Z. Petukhova; Chase M. Clark; Neha Garg; Paul R. Jensen; Adriana Blachowicz; Chelsi D. Cassilly; Lisa Guan; D. Cole Stevens; Jaclyn M. Winter; Shaun M. K. McKinnie; Barbara I. Adaikpoh; Skylar Carlson; Erin P. McCauley; William W. Metcalf; Tim S. Bugni; Michael W. Mullowney; Eric G. Pamer; Matthew T. Henke; Hazel Barton; David O. Carter; Alessandra S. Eustáquio; Roger G. Linington; Laura M. Sanchez; Mingxun Wang; Brian T. Murphy
errShare
errSave
Host metabolism can produce many indoles and phenols independently of the microbiome
errNature Metabolism
IF20.8
err2026-06-23
err0
errOAAI
errJenna E. AbuSalim; Kellen Olszewski; Salma Youssef; Sarah J. Mitchell; Craig J. Hunter; Jessica Little; Ashley Sidebottom; Jacob A. Boyer; Steve D. Knutson; Laith Z. Samarah; Michael R. MacArthur; Alessa L. Henneberg; Rolf-Peter Ryseck; Christiane A. Opitz; David W. C. MacMillan; Mohamed S. Donia; Eric G. Pamer; Sabrina Imam; Christopher J. Lehmann; Olatoyosi Odenike; Joshua D. Rabinowitz
errShare
errSave
Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance
errCell Host & Microbe
IF18.7
err2025-12-01
err0
PREAI
errCody G. Cole; Zhenrun J. Zhang; Shravan R. Dommaraju; Qiwen Dong; Rosemary L. Pope; Sophie S. Son; Emma J. McSpadden; Che K. Woodson; Huaiying Lin; Nicholas P. Dylla; Ashley M. Sidebottom; Anitha Sundararajan; Douglas A. Mitchell; Eric G. Pamer
errShare
errSave
Microbiota profiling to predict clinical events post-heart transplantation
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errKwan, Montserrat; Kaperak, Christopher; Lin, Huaiying; Cantoral, Jackelyn; Jadczak, Caroline; Mora, Ricardo; Bell, Elizabeth; Lehmann, Christopher; Pamer, Eric; Nguyen, Ann; Alegre, Maria-Luisa
errShare
errSave
Modifications of microbiome-derived cell-free RNA in plasma discriminates colorectal cancer samples
errNature Biotechnology
IF41.7
err2025-07-08
err0
PREAI
errCheng-Wei Ju; Ruitu Lyu; Han Li; Jiangbo Wei; Alberto J. Parra Vitela; Urszula Dougherty; Akushika Kwesi; Alexander Luna; Xuanhao Zhu; Shenghai Shen; Yunzheng Liu; Liangliang Wang; Xiaolong Cui; Yuzhi Xu; Bochen Jiang; Yiyi Ji; Peng Xia; Diana C. West-Szymanski; Chenxi Sun; Yuhao Zhong; Chang Ye; Angelica Moran; Christopher Lehmann; Eric Pamer; Wei Zhang; Marc Bissonnette; Li-Sheng Zhang; Chuan He
errShare
errSave
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration (vol 9, pg 55, 2024)
errNATURE MICROBIOLOGY
IF19.4
err2025-05-16
err0
PREAI
errLittle, Alexander S.; Younker, Isaac T.; Schechter, Matthew S.; Bernardino, Paola Nol; Meheust, Raphael; Stemczynski, Joshua; Scorza, Kaylie; Mullowney, Michael W.; Sharan, Deepti; Waligurski, Emily; Smith, Rita; Ramaswamy, Ramanujam; Leiter, William; Moran, David; Mcmillin, Mary; Odenwald, Matthew A.; Iavarone, Anthony T.; Sidebottom, Ashley M.; Sundararajan, Anitha; Pamer, Eric G.; Eren, A. Murat; Light, Samuel H.
errShare
errSave
Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom
errCELL SYSTEMS
IF7.7
err2025-02-01
err0
errOAAI
errDoran, Benjamin A.; Chen, Robert Y.; Giba, Hannah; Behera, Vivek; Barat, Bidisha; Sundararajan, Anitha; Lin, Huaiying; Sidebottom, Ashley; Pamer, Eric G.; Raman, Arjun S.
errShare
errSave
Intestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation
errGUT MICROBES
IF11
err2024-04-24
err0
errOAAI
errDavid, Clement; Czauderna, Aleksander; Cheng, Liqing; Lagune, Marion; Jung, Hea-Jin; Kim, Sohn G.; Pamer, Eric G.; Prados, Julien; Chen, Liang; Becattini, Simone
errShare
errSave
Activity of Gut-Derived Nisin-like Lantibiotics against Human Gut Pathogens and Commensals
errACS CHEMICAL BIOLOGY
IF3.8
err2024-01-31
err9
errOAAI
errZhang, Zhenrun J.; Wu, Chunyu; Moreira, Ryan; Dorantes, Darian; Pappas, Tea; Sundararajan, Anitha; Lin, Huaiying; Pamer, Eric G.; van der Donk, Wilfred A.
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errSave
Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile
errCELL REPORTS
IF6.9
err2023-08-01
err5
errOAAI
errDong, Qiwen; Lin, Huaiying; Allen, Marie-Maude; Garneau, Julian R.; Sia, Jonathan K.; Smith, Rita C.; Haro, Fidel; McMillen, Tracy; Pope, Rosemary L.; Metcalfe, Carolyn; Burgo, Victoria; Woodson, Che; Dylla, Nicholas; Kohout, Claire; Sundararajan, Anitha; Snitkin, Evan S.; Young, Vincent B.; Fortier, Louis-Charles; Kamboj, Mini; Pamer, Eric G.
errShare
errSave
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia (vol 14, 1104707, 2023)
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-05-22
err1
errOAAI
errAsare, Paul Tetteh; Lee, Chi-Hsien; Hurlimann, Vera; Teo, Youzheng; Cuenod, Aline; Akduman, Nermin; Gekeler, Cordula; Afrizal, Afrizal; Corthesy, Myriam; Kohout, Claire; Thomas, Vincent; de Wouters, Tomas; Greub, Gilbert; Clavel, Thomas; Pamer, Eric G.; Egli, Adrian; Maier, Lisa; Vonaesch, Pascale
errShare
errSave
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma
errCOMMUNICATIONS MEDICINE
IF6.3
err2023-03-03
err8
errOAAI
errSrinath, Abhinav; Xie, Bingqing; Li, Ying; Sone, Je Yeong; Romanos, Sharbel; Chen, Chang; Sharma, Anukriti; Polster, Sean; Dorrestein, Pieter C.; Weldon, Kelly C.; DeBiasse, Dorothy; Moore, Thomas; Lightle, Rhonda; Koskimaki, Janne; Zhang, Dongdong; Stadnik, Agnieszka; Piedad, Kristina; Hagan, Matthew; Shkoukani, Abdallah; Carrion-Penagos, Julian; Bi, Dehua; Shen, Le; Shenkar, Robert; Ji, Yuan; Sidebottom, Ashley; Pamer, Eric; Gilbert, Jack A.; Kahn, Mark L.; D'Souza, Mark; Sulakhe, Dinanath; Awad, Issam A.; Girard, Romuald
errShare
errSave
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-02-21
err12
errOAAI
errAsare, Paul Tetteh; Lee, Chi-Hsien; Hurlimann, Vera; Teo, Youzheng; Cuenod, Aline; Akduman, Nermin; Gekeler, Cordula; Afrizal, Afrizal; Corthesy, Myriam; Kohout, Claire; Thomas, Vincent; de Wouters, Tomas; Greub, Gilbert; Clavel, Thomas; Pamer, Eric G.; Egli, Adrian; Maier, Lisa; Vonaesch, Pascale
errShare
errSave
Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure
errNATURE COMMUNICATIONS
IF15.7
err2022-11-03
err28
errOAAI
errStutz, Matthew R.; Dylla, Nicholas P.; Pearson, Steven D.; Lecompte-Osorio, Paola; Nayak, Ravi; Khalid, Maryam; Adler, Emerald; Boissiere, Jaye; Lin, Huaiying; Leiter, William; Little, Jessica; Rose, Amber; Moran, David; Mullowney, Michael W.; Wolfe, Krysta S.; Lehmann, Christopher; Odenwald, Matthew; De la Cruz, Mark; Giurcanu, Mihai; Pohlman, Anne S.; Hall, Jesse B.; Chaubard, Jean-Luc; Sundararajan, Anitha; Sidebottom, Ashley; Kress, John P.; Pamer, Eric G.; Patel, Bhakti K.
errShare
errSave
Gut microbiome correlates of response and toxicity following anti-CD19 CAR T cell therapy (March, 10.1038/s41591-022-01702-9, 2022)
errNATURE MEDICINE
IF50
err2022-10-17
err3
errOAAI
errSmith, Melody; Dai, Anqi; Ghilardi, Guido; Amelsberg, Kimberly V.; Devlin, Sean M.; Pajarillo, Raymone; Slingerland, John B.; Beghi, Silvia; Herrera, Pamela S.; Giardina, Paul; Clurman, Annelie; Dwomoh, Emmanuel; Armijo, Gabriel; Gomes, Antonio L. C.; Littmann, Eric R.; Schluter, Jonas; Fontana, Emily; Taur, Ying; Park, Jae H.; Palomba, Maria Lia; Halton, Elizabeth; Ruiz, Josel; Jain, Tania; Pennisi, Martina; Afuye, Aishat Olaide; Perales, Miguel-Angel; Freyer, Craig W.; Garfall, Alfred; Gier, Shannon; Nasta, Sunita; Landsburg, Daniel; Gerson, James; Svoboda, Jakub; Cross, Justin; Chong, Elise A.; Giralt, Sergio; Gill, Saar I.; Riviere, Isabelle; Porter, David L.; Schuster, Stephen J.; Sadelain, Michel; Frey, Noelle; Brentjens, Renier J.; June, Carl H.; Pamer, Eric G.; Peled, Jonathan U.; Facciabene, Andrea; van den Brink, Marcel R. M.; Ruella, Marco
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errSave
Translating Microbiome Research From and To the Clinic
errANNUAL REVIEW OF MICROBIOLOGY
IF9.9
err2022-09-08
err13
errOAAI
errZhang, Zhenrun J.; Lehmann, Christopher J.; Cole, Cody G.; Pamer, Eric G.
errShare
errSave
Gut microbiome correlates of response and toxicity following anti-CD19 CAR T cell therapy
errNATURE MEDICINE
IF50
err2022-03-14
err158
errOAAI
errSmith, Melody; Dai, Anqi; Ghilardi, Guido; Amelsberg, Kimberly, V; Devlin, Sean M.; Pajarillo, Raymone; Slingerland, John B.; Beghi, Silvia; Herrera, Pamela S.; Giardina, Paul; Clurman, Annelie; Dwomoh, Emmanuel; Armijo, Gabriel; Gomes, Antonio L. C.; Littmann, Eric R.; Schluter, Jonas; Fontana, Emily; Taur, Ying; Park, Jae H.; Palomba, Maria Lia; Halton, Elizabeth; Ruiz, Josel; Jain, Tania; Pennisi, Martina; Afuye, Aishat Olaide; Perales, Miguel-Angel; Freyer, Craig W.; Garfall, Alfred; Gier, Shannon; Nasta, Sunita; Landsburg, Daniel; Gerson, James; Svoboda, Jakub; Cross, Justin; Chong, Elise A.; Giralt, Sergio; Gill, Saar, I; Riviere, Isabelle; Porter, David L.; Schuster, Stephen J.; Sadelain, Michel; Frey, Noelle; Brentjens, Renier J.; June, Carl H.; Pamer, Eric G.; Peled, Jonathan U.; Facciabene, Andrea; van den Brink, Marcel R. M.; Ruella, Marco
errShare
errSave
Microbiome-based therapeutics
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2022-01-06
err220
PREAI
errSorbara, Matthew T.; Pamer, Eric G.
errShare
errSave
TAM mediates adaptation of carbapenem-resistant Klebsiella pneumoniae to antimicrobial stress during host colonization and infection
errPLOS PATHOGENS
IF4.9
err2021-02-08
err16
errOAAI
errJung, Hea-Jin; Sorbara, Matthew T.; Pamer, Eric G.
errShare
errSave
Cervicovaginal bacterial communities in reproductive-aged Tanzanian women with Schistosoma mansoni, Schistosoma haematobium, or without schistosome infection
errISME JOURNAL
IF10
err2021-01-06
err8
errOAAI
errBullington, Brooke W.; Lee, Myung Hee; Mlingi, Jane; Paul, Ndalloh; Aristide, Christine; Fontana, Emily; Littmann, Eric R.; Mukerebe, Crispin; Shigella, Peter; Kashangaki, Philibert; Kalluvya, Samuel E.; de Dood, Claudia J.; van Dam, Govert J.; Corstjens, Paul L. A. M.; Fitzgerald, Daniel W.; Pamer, Eric G.; Downs, Jennifer A.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
S
Shizuo Akira
H-index: 269 · Papers: 1.5K
R
Richard A. Flavell
H-index: 246 · Papers: 1.5K
M
Michel C. Nussenzweig
H-index: 183 · Papers: 617
C
Carl H. June
H-index: 177 · Papers: 1.4K
J
Jedd D. Wolchok
H-index: 173 · Papers: 1.4K
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