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Dynamics of natural and pharmacologic control of an SIV variant with an envelope trafficking defect Rhodehouse, Kyle; Zitzmann, Carolin; Ravi, Meghana; Armstrong, Ciara; Moskovljevic, Milica; Moore, Hannah P.; Schill, Courtney; Fray, Emily J.; Kumar, Mithra R.; Penney, Toni; Krzykwa, Clara; Stauss, Miranda R.; Wiseman, Roger W.; O'Connor, David H.; Fennessey, Christine M.; Keele, Brandon F.; Lifson, Jeffrey D.; Ribeiro, Ruy M.; Perelson, Alan S.; Hoxie, James A.; Maness, Nicholas J.; Siliciano, Janet D.; Siliciano, Robert F. Share Save
Post-recovery viral shedding shapes wastewater-based epidemiological inferences Phan, Tin; Brozak, Samantha; Pell, Bruce; Ciupe, Stanca M.; Ke, Ruian; Ribeiro, Ruy M.; Gitter, Anna; Mena, Kristina D.; Perelson, Alan S.; Kuang, Yang; Wu, Fuqing Share Save
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SIy proviruses seeded later in infection are harbored in short-lived CD4+T cells Sambaturu, Narmada; Fray, Emily J.; Hariharan, Vivek; Wu, Fengting; Zitzmann, Carolin; Simonetti, Francesco R.; Barouch, Dan H.; Siliciano, Janet D.; Siliciano, Robert F.; Ribeiro, Ruy M.; Perelson, Alan S.; Molina-Paris, Carmen; Leitner, Thomas Share Save
Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance Phan, Tin; Ribeiro, Ruy M.; Edelstein, Gregory E.; Boucau, Julie; Uddin, Rockib; Marino, Caitlin; Liew, May Y.; Barry, Mamadou; Choudhary, Manish C.; Tien, Dessie; Su, Karry; Reynolds, Zahra; Li, Yijia; Sagar, Shruti; Vyas, Tammy D.; Kawano, Yumeko; Sparks, Jeffrey A.; Hammond, Sarah P.; Wallace, Zachary; Vyas, Jatin M.; Li, Jonathan Z.; Siedner, Mark J.; Barczak, Amy K.; Lemieux, Jacob E.; Perelson, Alan S. Share Save
Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers Kim, Kwang Su; Iwamoto, Masashi; Kitagawa, Kosaku; Park, Hyeongki; Hayashi, Sanae; Tsukuda, Senko; Matsui, Takeshi; Atsukawa, Masanori; Matsuura, Kentaro; Chuaypen, Natthaya; Tangkijvanich, Pisit; Allweiss, Lena; Nishiyama, Takara; Nakamura, Naotoshi; Fujita, Yasuhisa; Kawakami, Eiryo; Nakaoka, Shinji; Muramatsu, Masamichi; Aihara, Kazuyuki; Wakita, Takaji; Perelson, Alan S.; Dandri, Maura; Watashi, Koichi; Iwami, Shingo; Tanaka, Yasuhito Share Save
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Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion Phan, Tin; Conway, Jessica M.; Pagane, Nicole; Kreig, Jasmine; Sambaturu, Narmada; Iyaniwura, Sarafa; Li, Jonathan Z.; Ribeiro, Ruy M.; Ke, Ruian; Perelson, Alan S. Share Save
Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody Phan, Tin; Zitzmann, Carolin; Chew, Kara W.; Smith, Davey M.; Daar, Eric S.; Wohl, David A.; Eron, Joseph J.; Currier, Judith S.; Hughes, Michael D.; Choudhary, Manish C.; Deo, Rinki; Li, Jonathan Z.; Ribeiro, Ruy M.; Ke, Ruian; Perelson, Alan S. Share Save
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CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production Policicchio, Benjamin B.; Cardozo-Ojeda, Erwing Fabian; Xu, Cuiling; Ma, Dongzhu; He, Tianyu; Raehtz, Kevin D.; Sivanandham, Ranjit; Kleinman, Adam J.; Perelson, Alan S.; Apetrei, Cristian; Pandrea, Ivona; Ribeiro, Ruy M. Share Save
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AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques Dashti, Amir; Sukkestad, Sophia; Horner, Anna M.; Neja, Margaret; Siddiqi, Zain; Waller, Chevaughn; Goldy, Jordan; Monroe, Dominique; Lin, Alice; Schoof, Nils; Singh, Vidisha; Mavigner, Maud; Lifson, Jeffrey D.; Deleage, Claire; Tuyishime, Marina; Falcinelli, Shane D.; King, Hannah A. D.; Ke, Ruian; Mason, Rosemarie D.; Archin, Nancie M.; Dunham, Richard M.; Safrit, Jeffrey T.; Jean, Sherrie; Perelson, Alan S.; Margolis, David M.; Ferrari, Guido; Roederer, Mario; Silvestri, Guido; Chahroudi, Ann Share Save
Making waves: Integrating wastewater surveillance with dynamic modeling to track and predict viral outbreaks Phan, Tin; Brozak, Samantha; Pell, Bruce; Oghuan, Jeremiah; Gitter, Anna; Hu, Tao; Ribeiro, Ruy M.; Ke, Ruian; Mena, Kristina D.; Perelson, Alan S.; Kuang, Yang; Wu, Fuqing Share Save
The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy McMyn, Natalie F.; Varriale, Joseph; Fray, Emily J.; Zitzmann, Carolin; MaCleod, Hannah; Lai, Jun; Singhal, Anushka; Moskovljevic, Milica; Garcia, Mauro A.; Lopez, Brianna M.; Hariharan, Vivek; Rhodehouse, Kyle; Lynn, Kenneth; Tebas, Pablo; Mounzer, Karam; Montaner, Luis J.; Benko, Erika; Kovacs, Colin; Hoh, Rebecca; Simonetti, Francesco R.; Laird, Gregory M.; Deeks, Steven G.; Ribeiro, Ruy M.; Perelson, Alan S.; Siliciano, Robert F.; Siliciano, Janet M. Share Save
Variant-Specific Viral Kinetics in Acute COVID-19 Ribeiro, Ruy M.; Choudhary, Manish C.; Deo, Rinki; Giganti, Mark J.; Moser, Carlee; Ritz, Justin; Greninger, Alexander L.; Regan, James; Flynn, James P.; Wohl, David A.; Currier, Judith S.; Eron, Joseph J.; Hughes, Michael D.; Smith, Davey M.; Chew, Kara W.; Daar, Eric S.; Perelson, Alan S.; Li, Jonathan Z. Share Save
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