Dmitry A. Rodionov - Publications, H-index & Citations

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Dmitry A. Rodionov

Sanford Burnham Prebys Medical Discovery Institute

68H-index

230Paper Count

1.6WCitation Count

Published Papers 108

Publication Date

Enteropathy produced in mice by intergenerational transmission of small intestinal microbiota from undernourished children

Nature Microbiology

IF19.4

2026-06-16

OAAI

Kali M. Pruss; Clara Kao; Alexandra E. Byrne; Robert Y. Chen; Blanda Di Luccia; Laura Karvelyte; Reyan Coskun; Mackenzie Lemieux; Keshav Nepal; Daniel M. Webber; Matthew C. Hibberd; Yi Wang; Haoxin Liu; Dmitry A. Rodionov; Andrei L. Osterman; Marco Colonna; Christian Maueroder; Kodi Ravichandran; Michael J. Barratt; Tahmeed Ahmed; Jeffrey I. Gordon

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Diversity of Cardinium Endosymbiont Genomes from Plant-Parasitic Nematodes

International Journal of Molecular Sciences

IF4.9

2026-01-21

OAAI

Sergey V. Tarlachkov; Alexander Y. Ryss; Yury Y. Ilinsky; Dmitry A. Rodionov; Lydmila I. Evtushenko; Sergei A. Subbotin

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Exploring differences in the human gut microbiome between Han Chinese and non-Chinese populations

Genome Biology

IF9.4

2026-01-17

OAAI

Jingjing Wang; Zhenmiao Zhang; Yang Chen; Xi Zhou; Jiaxin Xiang; Chao Yang; Dmitry A. Rodionov; Andrei L. Osterman; Qinwei Qiu; Yusheng Deng; Yanmin Liu; Chengrui Wang; Xiaoxiao Shang; Li Huang; Chen Sun; Jianwen Guo; Zhimin Yang; Lixiang Zhai; Zhaoxiang Bian; Aiping Lyu; Lijuan Han; Wei Jia; Xiaodong Fang; Lu Zhang

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Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria

Nature Microbiology

IF19.4

2025-07-16

OAAI

Aleksandr A. Arzamasov; Dmitry A. Rodionov; Matthew C. Hibberd; Janaki L. Guruge; James E. Kent; Marat D. Kazanov; Semen A. Leyn; Marinela L. Elane; Kristija Sejane; Annalee Furst; Lars Bode; Michael J. Barratt; Jeffrey I. Gordon; Andrei L. Osterman

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Ex Vivo Interaction Between Human Gut Microbiota and Artemisinin: A Multi-Omics Perspective

ACS OMEGA

IF4.3

2025-05-15

OAAI

Gomes, PWP; Mannochio-Russo, H; Lablokov, SN; Rodionov, DA; Yang, H; Dorrestein, PC; Peterson, SN; Peterson, CT

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Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome

GUT MICROBES

IF11

2025-05-09

OAAI

Anna Samarra; Simone Renwick; Aleksandr A. Arzamasov; Dmitry A. Rodionov; Kennedy Spann; Raul Cabrera-Rubio; Antia Acuna-Gonzalez; Cecilia Martínez-Costa; Lindsay Hall; Nicola Segata; Andrei L. Osterman; Lars Bode; Maria Carmen Collado

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In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2′-fucosyllactose

GUT MICROBES

IF11

2025-03-18

OAAI

Aruto Nakajima; Aleksandr A. Arzamasov; Mikiyasu Sakanaka; Ryuta Murakami; Tomoya Kozakai; Keisuke Yoshida; Toshihiko Katoh; Miriam N. Ojima; Junko Hirose; Saeko Nagao; Jin-Zhong Xiao; Toshitaka Odamaki; Dmitry A. Rodionov; Takane Katayama

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Engineering ethanologenicity into the extremely thermophilic bacterium Anaerocellum ( f. Caldicellulosiriuptor) bescii

METABOLIC ENGINEERING

IF6.8

2024-11-01

PREAI

Bing, Ryan G.; Ford, Kathryne C.; Willard, Daniel J.; Manesh, Mohamad J. H.; Straub, Christopher T.; Laemthong, Tunyaboon; Alexander, Benjamin H.; Tanwee, Tania; O'Quinn, Hailey C.; Poole, Farris L.; Vailionis, Jason; Zhang, Ying; Rodionov, Dmitry; Adams, Michael W. W.; Kelly, Robert M.

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In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides

NATURE CHEMICAL BIOLOGY

IF13.7

2024-10-23

OAAI

Wesener, Darryl A.; Beller, Zachary W.; Hill, Megan F.; Yuan, Han; Belanger, David B.; Frankfater, Cheryl; Terrapon, Nicolas; Henrissat, Bernard; Rodionov, Dmitry A.; Leyn, Semen A.; Osterman, Andrei; Vlieg, Johan E. T. van Hylckama; Gordon, Jeffrey I.

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A microbiome-directed therapeutic food for children recovering from severe acute malnutrition

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2024-10-02

OAAI

Hartman, Steven J.; Hibberd, Matthew C.; Mostafa, Ishita; Naila, Nurun N.; Islam, Md. Munirul; Zaman, Mahabub Uz; Huq, Sayeeda; Mahfuz, Mustafa; Islam, Md. Tazul; Mukherji, Kallol; Moghaddam, Vaha Akbary; Chen, Robert Y.; Province, Michael A.; Webber, Daniel M.; Henrissat, Suzanne; Henrissat, Bernard; Terrapon, Nicolas; Rodionov, Dmitry A.; Osterman, Andrei L.; Barratt, Michael J.; Ahmed, Tahmeed; Gordon, Jeffrey I.

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CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli

COMMUNICATIONS BIOLOGY

IF5.1

2024-09-17

OAAI

Rodionova, Irina A.; Lim, Hyun Gyu; Gao, Ye; Rodionov, Dmitry A.; Hutchison, Ying; Szubin, Richard; Dalldorf, Christopher; Monk, Jonathan; Palsson, Bernhard O.

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Comparative Genomic and Genetic Evidence on a Role for the OarX Protein in Thiamin Salvage

ACS OMEGA

IF4.3

2024-06-21

OAAI

Oliveira-Filho, Edmar R.; Rodionov, Dmitry A.; Hanson, Andrew D.

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Inducible CRISPR- targeted knockdown of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-09-21

OAAI

Beller, Zachary W.; Wesener, Darryl A.; Seebeck, Timothy R.; Guruge, Janaki L.; Byrne, Alexandra E.; Henrissat, Suzanne; Terrapon, Nicolas; Henrissat, Bernard; Rodionov, Dmitry A.; Osterman, Andrei L.; Suarez, Chris; Bacalzo, Nikita P., Jr.; Chen, Ye; Couture, Garret; Lebrilla, Carlito B.; Zhang, Zhigang; Eastlund, Erik R.; Mccann, Caitlin H.; Davis, Gregory D.; Gordon, Jeffrey I.

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Personalized Response of Parkinson's Disease Gut Microbiota to Nootropic Medicinal Herbs In Vitro: A Proof of Concept

MICROORGANISMS

IF4.2

2023-08-01

OAAI

Peterson, Christine Tara; Iablokov, Stanislav N.; Rodionov, Dmitry A.; Peterson, Scott N.

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Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2023-06-28

OAAI

Vailionis, Jason L.; Zhao, Weishu; Zhang, Ke; Rodionov, Dmitry A.; Lipscomb, Gina L.; Tanwee, Tania N. N.; O'Quinn, Hailey C.; Bing, Ryan G.; Kelly, Robert M.; Adams, Michael W. W.; Zhang, Ying

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Alteration of Community Metabolism by Prebiotics and Medicinal Herbs

MICROORGANISMS

IF4.2

2023-03-28

OAAI

Peterson, Christine Tara; Perez-Santiago, Josue; Iablokov, Stanislav N.; Rodionov, Dmitry A.; Peterson, Scott N.

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Bacterial NadQ (COG4111) is a Nudix-like, ATP-responsive regulator of NAD biosynthesis

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2022-12-01

OAAI

Minazzato, Gabriele; Gasparrini, Massimiliano; Heroux, Annie; Sernova, Natalia V.; Rodionov, Dmitry A.; Cianci, Michele; Sorci, Leonardo; Raffaelli, Nadia

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Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2022-11-08

OAAI

Crosby, James R.; Laemthong, Tunyaboon; Bing, Ryan G.; Zhang, Ke; Tanwee, Tania N. N.; Lipscomb, Gina L.; Rodionov, Dmitry A.; Zhang, Ying; Adams, Michael W. W.; Kelly, Robert M.

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Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria Is Governed by Global Transcriptional Regulator NagR

MSYSTEMS

IF4.6

2022-10-26

OAAI

Arzamasov, Aleksandr A.; Nakajima, Aruto; Sakanaka, Mikiyasu; Ojima, Miriam N.; Katayama, Takane; Rodionov, Dmitry A.; Osterman, Andrei L.

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Genetic Divergence of Vibrio vulnificus Clinical Isolates with Mild to Severe Outcomes

MBIO

IF4.7

2022-10-26

OAAI

Kling, Kendall; Trinh, Sonya A.; Leyn, Semen A.; Rodionov, Dmitry A.; Rodionov, Ivan D.; Herrera, Alfa; Cervantes, Kasey; Pankey, George; Ashcraft, Deborah; Ozer, Egon A.; Godzik, Adam; Satchell, Karla J. F.

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Research Directions