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A human-mouse atlas of intrarenal myeloid cells identifies conserved disease-associated macrophages in lupus nephritis Hoover, Paul J.; Raparia, Chirag; Lieb, David J.; Tzur, Yochay; Kang, Joyce; Arazi, Arnon; Leavitt, Rollin; Mishra, Rakesh; Shah, Sujal I.; Simmons, Daimon; Li, Stephen; Peters, Michael; Eisenhaure, Thomas; Few-Cooper, Timothy J.; Gurajala, Saisram S.; Sonny, Abraham; Hodgin, Jeffrey B.; Berthier, Celine C.; Guthridge, Joel M.; Fava, Andrea; Clancy, Robert M.; Putterman, Chaim; Izmirly, Peter M.; Belmont, H. Michael; Kalunian, Kenneth; Kamen, Diane; Wofsy, David; Buyon, Jill P.; James, Judith A.; Petri, Michelle; Diamond, Betty; Raychaudhuri, Soumya; Shen-Orr, Shai S.; Hacohen, Nir; Davidson, Anne Share Save
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Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis Luo, Yang; Huang, Chuan-Chin; Howard, Nicole C.; Wang, Xin; Liu, Qingyun; Li, Xinyi; Zhu, Junhao; Amariuta, Tiffany; Asgari, Samira; Ishigaki, Kazuyoshi; Calderon, Roger; Raman, Sahadevan; Ramnarine, Alexandrea K.; Mayfield, Jacob A.; Moody, D. Branch; Lecca, Leonid; Fortune, Sarah M.; Murray, Megan B.; Raychaudhuri, Soumya Share Save
A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease Thomas, Tom; Friedrich, Matthias; Rich-Griffin, Charlotte; Pohin, Mathilde; Agarwal, Devika; Pakpoor, Julia; Lee, Carl; Tandon, Ruchi; Rendek, Aniko; Aschenbrenner, Dominik; Jainarayanan, Ashwin; Voda, Alexandru; Siu, Jacqueline H. Y.; Sanches-Peres, Raphael; Nee, Eloise; Sathananthan, Dharshan; Kotliar, Dylan; Todd, Peter; Kiourlappou, Maria; Gartner, Lisa; Ilott, Nicholas; Issa, Fadi; Hester, Joanna; Turner, Jason; Nayar, Saba; Mackerodt, Jonas; Zhang, Fan; Jonsson, Anna; Brenner, Michael; Raychaudhuri, Soumya; Kulicke, Ruth; Ramsdell, Danielle; Stransky, Nicolas; Pagliarini, Ray; Bielecki, Piotr; Spies, Noah; Marsden, Brian; Taylor, Stephen; Wagner, Allon; Klenerman, Paul; Walsh, Alissa; Coles, Mark; Jostins-Dean, Luke; Powrie, Fiona M.; Filer, Andrew; Travis, Simon; Uhlig, Holm H.; Dendrou, Calliope A.; Buckley, Christopher D. Share Save
Identifying genetic variants that influence the abundance of cell states in single-cell data Rumker, Laurie; Sakaue, Saori; Reshef, Yakir; Kang, Joyce B.; Yazar, Seyhan; Alquicira-Hernandez, Jose; Valencia, Cristian; Lagattuta, Kaitlyn A.; Mah-Som, Annelise; Nathan, Aparna; Powell, Joseph E.; Loh, Po-Ru; Raychaudhuri, Soumya Share Save
The influence of HLA genetic variation on plasma protein expression Krishna, Chirag; Chiou, Joshua; Sakaue, Saori; Kang, Joyce B.; Christensen, Stephen M.; Lee, Isac; Aksit, Melis Atalar; Kim, Hye In; von Schack, David; Raychaudhuri, Soumya; Ziemek, Daniel; Hu, Xinli Share Save
History of tuberculosis disease is associated with genetic regulatory variation in Peruvians Nieto-Caballero, Victor E.; Reijneveld, Josephine F.; Ruvalcaba, Angel; Innocenzi, Gabriel; Abeydeera, Nalin; Asgari, Samira; Lopez, Kattya; Iwany, Sarah K.; Luo, Yang; Nathan, Aparna; Fernandez-Salinas, Daniela; Chinas, Marcos; Huang, Chuan-Chin; Zhang, Zibiao; Leon, Segundo R.; Calderon, Roger I.; Lecca, Leonid; Budzik, Jonathan M.; Murray, Megan; Van Rhijn, Ildiko; Raychaudhuri, Soumya; Moody, D. Branch; Suliman, Sara; Gutierrez-Arcelus, Maria Share Save
QUIESCENT HUMAN BLOOD MONOCYTE STATES ARE PRE-COMMITTED TO AN INFLAMMATORY SYNOVIAL TRANSCRIPTIONAL PROGRAM Amies, E.; Christofi, M.; Mulhearn, B.; Marshall, L.; Sutcliffe, M.; Hyrich, K.; Morgan, A.; Wilson, A. G.; Isaacs, J.; Plant, D.; Barton, A.; Hussell, T.; Raychaudhuri, S.; Martin, P.; Viatte, S. Share Save
CONTRIBUTION OF RARE EXONIC VARIANTS IN TELOMERE-RELATED GENES TO INTERSTITIAL LUNG DISEASE RISK IN PATIENTS WITH RHEUMATOID ARTHRITIS AND IDIOPATHIC PULMONARY FIBROSIS Juge, P. A.; Kawano-Dourado, L.; Stockwell, A.; Lee, J. S.; Gazal, S.; Mcdermott, G.; Hayashi, K.; Cui, J.; Granger, B.; Kannengiesser, C.; Borie, R.; Stervinou, L. Wemeau; Debray, M. P.; Wolters, P. J.; Marchand-Adam, S.; Richez, C.; Nunes, H.; Froguel, P.; Avouac, J.; Flipo, R. M.; Cottin, V.; Boissier, M. C.; Schaeverbeke, T.; Kermanac'h, N. Saidenberg; Crestani, B.; Doyle, T.; Raychaudhuri, S.; Karlson, E.; Yaspan, B. L.; Dieude, P. Share Save
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles Sakaue, Saori; Weinand, Kathryn; Isaac, Shakson; Dey, Kushal K.; Jagadeesh, Karthik; Kanai, Masahiro; Watts, Gerald F. M.; Zhu, Zhu; Brenner, Michael B.; McDavid, Andrew; Donlin, Laura T.; Wei, Kevin; Price, Alkes L.; Raychaudhuri, Soumya Share Save
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