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Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets Ellrot, Kyle; Wong, Christopher K.; Yau, Christina; Castro, Mauro A. A.; Lee, Jordan A.; Karlberg, Brian J.; Grewal, Jasleen K.; Lagani, Vincenzo; Tercan, Bahar; Friedl, Verena; Hinoue, Toshinori; Uzunangelov, Vladislav; Westlake, Lindsay; Loinaz, Xavier; Felau, Ina; Wang, Peggy I.; Kemal, Anab; Caesar-Johnson, Samantha J.; Shmulevich, Ilya; Lazar, Alexander J.; Tsamardinos, Ioannis; Hoadley, Katherine A.; Robertson, A. Gordon; Knijnenburg, Theo A.; Benz, Christopher C.; Stuart, Joshua M.; Zenklusen, Jean C.; Cherniack, Andrew D.; Laird, Peter W. Share Save
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Leveraging compact feature sets for TCGA-based molecular subtype classification on new samples Ellrott, Kyle; Wong, Chris K.; Yau, Christina; Castro, Mauro A.; Lee, Jordan; Karlberg, Brian; Grewal, Jasleen K.; Lagani, Vincenzo; Tercan, Bahar; Friedl, Verena; Hinoue, Toshinori; Uzunangelov, Vladislav; Westlake, Lindsay; Loinaz, Xavier; Felau, Ina; Wang, Peggy; Kemal, Anab; Caesar-Johnson, Samantha J.; Shmulevich, Ilya; Lazar, Alexander J.; Tsamardinos, Ioannis; Hoadley, Katherine A.; Robertson, Gordon A.; Knijnenburg, Theo A.; Benz, Christopher C.; Stuart, Joshua M.; Zenklusen, Jean C.; Cherniack, Andrew D.; Laird, Peter W. Share Save
Toward mechanistic medical digital twins: some use cases in immunology Laubenbacher, Reinhard; Adler, Fred; An, Gary; Castiglione, Filippo; Eubank, Stephen; Fonseca, Luis L.; Glazier, James; Helikar, Tomas; Jett-Tilton, Marti; Kirschner, Denise; Macklin, Paul; Mehrad, Borna; Moore, Beth; Pasour, Virginia; Shmulevich, Ilya; Smith, Amber; Voigt, Isabel; Yankeelov, Thomas E.; Ziemssen, Tjalf Share Save
Forum on immune digital twins: a meeting report Laubenbacher, Reinhard; Adler, Fred; An, Gary; Castiglione, Filippo; Eubank, Stephen; Fonseca, Luis L.; Glazier, James; Helikar, Tomas; Jett-Tilton, Marti; Kirschner, Denise; Macklin, Paul; Mehrad, Borna; Moore, Beth; Pasour, Virginia; Shmulevich, Ilya; Smith, Amber; Voigt, Isabel; Yankeelov, Thomas E.; Ziemssen, Tjalf Share Save
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Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation Stahlberg, Eric A. A.; Abdel-Rahman, Mohamed; Aguilar, Boris; Asadpoure, Alireza; Beckman, Robert A. A.; Borkon, Lynn L. L.; Bryan, Jeffrey N. N.; Cebulla, Colleen M. M.; Chang, Young Hwan; Chatterjee, Ansu; Deng, Jun; Dolatshahi, Sepideh; Gevaert, Olivier; Greenspan, Emily J. J.; Hao, Wenrui; Hernandez-Boussard, Tina; Jackson, Pamela R. R.; Kuijjer, Marieke; Lee, Adrian; Macklin, Paul; Madhavan, Subha; McCoy, Matthew D. D.; Mirzaei, Navid Mohammad; Razzaghi, Talayeh; Rocha, Heber L. L.; Shahriyari, Leili; Shmulevich, Ilya; Stover, Daniel G. G.; Sun, Yi; Syeda-Mahmood, Tanveer; Wang, Jinhua; Wang, Qi; Zervantonakis, Ioannis Share Save
Synthetic lethal kinases in Ras/p53 mutant squamous cell carcinoma Moser, Russell; Gurley, Kay E.; Nikolova, Olga; Qin, Guangrong; Joshi, Rashmi; Mendez, Eduardo; Shmulevich, Ilya; Ashley, Amanda; Grandori, Carla; Kemp, Christopher J. Share Save
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NCI Imaging Data Commons Fedorov, Andrey; Longabaugh, William J. R.; Pot, David; Clunie, David A.; Pieper, Steve; Aerts, Hugo J. W. L.; Homeyer, Andre; Lewis, Rob; Akbarzadeh, Afshin; Bontempi, Dennis; Clifford, William; Herrmann, Markus D.; Hoefener, Henning; Octaviano, Igor; Osborne, Chad; Paquette, Suzanne; Petts, James; Punzo, Davide; Reyes, Madelyn; Schacherer, Daniela P.; Tian, Mi; White, George; Ziegler, Erik; Shmulevich, Ilya; Pihl, Todd; Wagner, Ulrike; Farahani, Keyvan; Kikinis, Ron Share Save
Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis (vol 31, 107577, 2020) Peterson, Eliza J. R.; Abidi, Abrar A.; Arrieta-Ortiz, Mario L.; Aguilar, Boris; Yurkovich, James T.; Kaur, Amardeep; Pan, Min; Srinivas, Vivek; Shmulevich, Ilya; Baliga, Nitin S. Share Save
A CRISPR/Cas9-Engineered ARID1A-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation Lo, Yuan-Hung; Kolahi, Kevin S.; Du, Yuhong; Chang, Chiung-Ying; Krokhotin, Andrey; Nair, Ajay; Sobba, Walter D.; Karlsson, Kasper; Jones, Sunny J.; Longacre, Teri A.; Mah, Amanda T.; Tercan, Bahar; Sockell, Alexandra; Xu, Hang; Seoane, Jose A.; Chen, Jin; Shmulevich, Ilya; Weissman, Jonathan S.; Curtis, Christina; Califano, Andrea; Fu, Haian; Crabtree, Gerald R.; Kuo, Calvin J. Share Save
Discovery of driver non-coding splice-site-creating mutations in cancer Cao, Song; Zhou, Daniel Cui; Oh, Clara; Jayasinghe, Reyka G.; Zhao, Yanyan; Yoon, Christopher J.; Wyczalkowski, Matthew A.; Bailey, Matthew H.; Tsou, Terrence; Gao, Qingsong; Malone, Andrew; Reynolds, Sheila; Shmulevich, Ilya; Wendl, Michael C.; Chen, Feng; Ding, Li Share Save
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