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J

Jan Köster

Laboratory of Experimental Oncology and Radiobiology

75H-index
642Paper Count
3.4WCitation Count
Published Papers 198
Publication Date
Statescope: an integrative deconvolution framework for discovering cell states in tumors
err2026-07-06
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errJurriaan Janssen; Mischa F. B. Steketee; Aryamaan Bose; Saskia van Asten; Paul P. Eijk; Frederike Dijk; Arantza Farina Sarasqueta; Febe van Maldegem; David P. Noske; Idris Bahce; Jan Koster; Juan J. Garcia Vallejo; Richard Schoonhoven; Mark A. van de Wiel; Teodora Radonic; Bauke Ylstra; Yongsoo Kim
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Transcriptome-Based Classification of Resected Pancreatic Ductal Adenocarcinoma Enhances Prognostic Modelling Accuracy of Overall Survival Following Adjuvant Treatment
err2026-04-27
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errMarjolein F. Lansbergen; Vincent R. Lanting; Paul Manoukian; Marc G. Besselink; Geert Kazemier; Ignace H. J. T. de Hingh; Mike S. L. Liem; Casper H. J. van Eijck; Erwin van der Harst; Vincent E. de Meijer; Ronald M. van Dam; Martijn W. J. Stommel; Jan Koster; Michael W. T. Tanck; Arantza Fariña Sarasqueta; Joanne Verheij; Frederike Dijk; Johanna W. Wilmink; Maarten F. Bijlsma; Hanneke W. M. van Laarhoven; Dutch Pancreatic Cancer Group
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Temporal Nasal Epithelial Gene Expression Patterns in Healthy Individuals Infected With Rhinovirus-16, and Its Modulation by Carrot Rhamnogalacturonan-I
err2026-04-09
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errJasper Mol; Richard Volckmann; Abilash Ravi; Lara Ravanetti; Wim Calame; Sue McKay; Ruud Albers; Jan Koster; René Lutter
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Impact of treatment history on drug resistance of metastatic colorectal cancer organoids
err2025-10-17
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errMaarten A. Huismans; Lidwien P. Smabers; Sascha R. Brunner; Arne van Hoeck; Demi van de Kaa; Ingrid A. Franken; Emerens Wensink; Jan Koster; Richard Volckmann; Onno Kranenburg; Miriam Koopman; Hugo J.G. Snippert; Jeanine M.L. Roodhart
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The immune landscape of pediatric (extra)cranial solid tumors: a systematic review and integration of immunohistochemistry and single-cell RNA sequencing data
err2025-08-12
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errFrancisca J. Bergsma; Jan Koster; Bob Baalman; Francis Mussai; Hubert N. Caron; Jan J. Molenaar; Judith Wienke
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The pan-cancer proteome atlas, a mass spectrometry-based landscape for discovering tumor biology, biomarkers, and therapeutic targets
err2025-05-29
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PREAI
errJaco C. Knol; Mengge Lyu; Franziska Böttger; Madalena Nunes Monteiro; Thang V. Pham; Frank Rolfs; Andrea Vallés-Martí; Tim Schelfhorst; Richard R. de Goeij-de Haas; Irene V. Bijnsdorp; Shuaiyao Wang; Fangfei Zhang; Jun A; Bart A. Westerman; Barbara Sitek; Janne Lehtiö; Jan Koster; Jan N.M. IJzermans; Hanneke W.M. van Laarhoven; Maarten F. Bijlsma; Jan Paul Medema; Alex A. Henneman; Sander R. Piersma; Ruud H. Brakenhoff; Jacqueline Cloos; Valentina Cordo'; Daphne de Jong; Geert Kazemier; Danijela Koppers-Lalic; Mariette Labots; Tessa Y.S. Le Large; John W.M. Martens; Jules P.P. Meijerink; Madiha Mumtaz; Chantal Scheepbouwer; Robby E. Kibbelaar; David P. Noske; Renske D.M. Steenbergen; Nicole C.T. van Grieken; Winan van Houdt; Elisa Giovannetti; Geert J.L.H. van Leenders; Jos Jonkers; Tong Liu; Meisi Yan; Xiaolu Zhan; Tiannan Guo; Connie R. Jimenez
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Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling
err2025-05-15
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errAnckaert, Jasper; Cobos, Francisco Avila; Decock, Anneleen; Decruyenaere, Philippe; Deleu, Jill; De Preter, Katleen; De Wever, Olivier; De Wilde, Jilke; Dhondt, Bert; D'huyvetter, Thibaut; Everaert, Celine; Fierro, Carolina; Helsmoortel, Hetty H.; Hendrix, An; Hulstaert, Eva; Koster, Jan; Kuersten, Scott; Mercer, Tim R.; Mestdagh, Pieter; Morlion, Annelien; Nijs, Nele; Nuytens, Justine; Philippron, Annouck; Piofczyk, Thomas; Poma-Soto, Franco; Schoofs, Kathleen; Schroth, Gary P.; Thas, Olivier; Vanden Eynde, Eveline; Vandesompele, Jo; Van Maerken, Tom; Van Paemel, Ruben; Verniers, Kimberly; Verwilt, Jasper; Yigit, Nurten
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High human papillomavirus viral load and local immune dysregulation are associated with poor clinical outcomes in patients with cervical cancer
err2025-05-10
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PREAI
errXionge Mei; Seth-Frerich Fobian; Marloes IJff; Johannes Crezee; Gregor G.W. van Bochove; Luc R.C.W. van Lonkhuijzen; Constantijne H. Mom; Colette B.M. van den Broek; Jan Koster; Willem de Koning; Andrew P. Stubbs; Renske D.M. Steenbergen; Timo L.M. ten Hagen; Louis Vermeulen; Lukas J.A. Stalpers; Arlene L. Oei
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Implementation of paediatric precision oncology into clinical practice: The individualized therapies for children with cancer program 'iTHER' (vol 175, pg 311, 2022)
err2025-05-01
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errLangenberg, Karin P. S.; Meister, Michael T.; Bakhuizen, Jette J.; Boer, Judith M.; van Eijkelenburg, Natasha K. A.; Hulleman, Esther; Ilan, Uri; Looze, Eleonora J.; Dierselhuis, Miranda P.; van der Lugt, Jasper; Breunis, Willemijn; Schild, Linda G.; Ober, Kimberley; van Hooff, Sander R.; Scheijde-Vermeulen, Marijn A.; Hiemcke-Jiwa, Laura S.; Flucke, Uta E.; Kranendonk, Mariette E. G.; Wesseling, Pieter; Sonneveld, Edwin; Punt, Simone; Boltjes, Arjan; van Dijk, Freerk; Verwiel, Eugene T. P.; Volckmann, Richard; Hehir-Kwa, Jayne Y.; Kester, Lennart A.; Koudijs, Marco M. J.; Waanders, Esme; Holstege, Frank C. P.; Vormoor, H. Josef; Hoving, Eelco W.; van Noesel, Max M.; Pieters, Rob; Kool, Marcel; Stumpf, Miriam; Blattner-Johnson, Mirjam; Balasubramanian, Gnana P.; Van Tilburg, Cornelis M.; Jones, Barbara C.; Jones, David T. W.; Witt, Olaf; Pfister, Stefan M.; Jongmans, Marjolijn C. J.; Kuiper, Roland P.; de Krijger, Ronald R.; Wijnen, Marc H. W.; den Boer, Monique L.; Zwaan, C. Michel; Kemmeren, Patrick; Koster, Jan; Tops, Bastiaan B. J.; Goemans, Bianca F.; Molenaar, Jan J.
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Tumor gene expression is associated with venous thromboembolism in patients with ductal pancreatic adenocarcinoma
err2025-02-01
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errBosch, Floris T. M.; Dijk, Frederike; Briede, Saskia; Groen, Jesse, V; Hanna-Sawires, Randa G.; Halfwerk, Hans; Klok, Frederikus A.; Kaasjager, Karin A. H.; Brosens, Lodewijk A. A.; Molenaar, Quintus; Bonsing, Bert A.; Mieog, Sven; Besselink, Marc G.; Busch, Olivier R.; Verheij, Joanne; Sarasqueta, Arantza Farina; Wilmink, Hanneke W.; Koster, Jan; Bijlsma, Maarten F.; Versteeg, Henri H.; van Es, Nick; Buijs, Jeroen T.
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Biglycan-driven risk stratification in ZFTA-RELA fusion supratentorial ependymomas through transcriptome profiling
err2025-01-07
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errOkonechnikov, Konstantin; Ghasemi, David R.; Schrimpf, Daniel; Tonn, Svenja; Mynarek, Martin; Koster, Jan; Milde, Till; Zheng, Tuyu; Sievers, Philipp; Sahm, Felix; Jones, David T. W.; von Deimling, Andreas; Pfister, Stefan M.; Kool, Marcel; Pajtler, Kristian W.; Korshunov, Andrey
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NanoCMSer: a consensus molecular subtype stratification tool for fresh-frozen and paraffin-embedded colorectal cancer samples
err2024-12-25
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PREAI
errTorang, Arezo; van de Weerd, Simone; Lammers, Veerle; van Hooff, Sander; van den Berg, Inge; van den Bergh, Saskia; Koopman, Miriam; Ijzermans, Jan N.; Roodhart, Jeanine M. L.; Koster, Jan; Medema, Jan Paul
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Identification of pancreatic cancer-specific protease substrates for protease-dependent targeted delivery
err2024-11-20
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errSlapak, Etienne J.; Zwijnenburg, Danny A.; Koster, Jan; Bijlsma, Maarten F.; Spek, C. Arnold
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Transcriptome-based classification to predict FOLFIRINOX response in a real-world metastatic pancreatic cancer cohort
err2024-11-01
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errLansbergen, Marjolein F.; Dings, Mark P. G.; Manoukian, Paul; Farina, Arantza; Waasdorp, Cynthia; Hooijer, Gerrit K. J.; Verheij, Joanne; Koster, Jan; Zwijnenburg, Danny A.; Wilmink, Johanna W.; Medema, Jan Paul; Dijk, Frederike; van Laarhoven, Hanneke W. M.; Bijlsma, Maarten F.
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Runx1t1 is an epigenetic regulator essential for MYCN-driven neuroblastoma tumorigenesis
err2024-10-01
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PREAI
errNorris, M.; Murray, J.; Valli, E.; Milazzo, G.; Mayoh, C.; Gifford, A.; Fletcher, J.; Xue, C.; Jayatilleke, N.; Gamble, L.; De Rosa, P.; Marshall, G.; Giorgi, F.; Koster, J.; Perini, G.; Haber, M.
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NBAtlas: A harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors
err2024-10-01
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errBonine, Noah; Zanzani, Vittorio; Van Hemelryk, Annelies; Vanneste, Bavo; Zwicker, Christian; Thone, Tinne; Roelandt, Sofie; Bekaert, Sarah-Lee; Koster, Jan; Janoueix-Lerosey, Isabelle; Thirant, Cecile; Van Haver, Stephane; Roberts, Stephen S.; Mus, Liselot M.; De Wilde, Bram; Van Roy, Nadine; Everaert, Celine; Speleman, Frank; Vermeirssen, Vanessa; Scott, Charlotte L.; De Preter, Katleen
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Enhancing clinical decision-making: The role of ex vivo drug sensitivity profiling in pediatric precision medicine
err2024-09-05
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PREAI
errSchoonbeek, Marlinde C.; Vernooij, Lindy; Swaak, Sarah E. M.; Amo-Addae, Vicky J. E.; Koster, Jan; Van Hoo, Sander; Eising, Selma; Van den Boogaard, Marlinde T. L.; Molenaar, Jan J.
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Next generation pediatric precision oncology: Functional profiling of patient-derived viable tumor material to link genotype and phenotype
err2024-09-05
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PREAI
errLooze, Eleonora J.; Mao, Jie; Peterziel, Heike; Boltjes, Arjan; Koopmans, Bianca; Koster, Jan; Kool, Marcel; Van Noesel, Max M.; Witt, Olaf; Molenaar, Jan J.; Oehme, Ina; Dolman, M. Emmy M.; Langenberg, Karin P. S.
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Predictive biomarkers for response to TGF- (3 inhibition in resensitizing chemo(radiated) esophageal adenocarcinoma
err2024-09-01
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errLiu, Dajia; van der Zalm, Amber P.; Koster, Jan; Bootsma, Sanne; Oyarce, Cesar; van Laarhoven, Hanneke W. M.; Bijlsma, Maarten F.
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Gemcitabine therapeutically disrupts essential SIRT1-mediated p53 repression in atypical teratoid/rhabdoid tumors
err2024-09-01
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errMetselaar, Dennis S.; Meel, Michael H.; Goulding, Joshua R.; du Chatinier, Aimee; Rigamonti, Leyla; Waranecki, Piotr; Geisemeyer, Neal; de Gooijer, Mark C.; Breur, Marjolein; Koster, Jan; van Zanten, Sophie E. M. Veldhuijzen; Bugiani, Marianna; Franke, Niels E.; Reddy, Alyssa; Wesseling, Pieter; Kaspers, Gertjan J. L.; Hulleman, Esther
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