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T

Tomasz J. Nowakowski

University of California, San Francisco

55H-index
211Paper Count
1.6WCitation Count
Published Papers 67
Publication Date
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Cerebrovascular vulnerability and fibrosis in human brain aneurysms
errNature Neuroscience
IF20
err2026-06-10
err0
errOAAI
errJerry C. Wang; Chang N. Kim; Shubhang Bhalla; Lea Scherschinski; Adnan Gopinadhan; Santhosh Arul; Damian Sanchez; Tyler D. Schriber; Amanda C. M. Apolonio; Belda Gülsuyu; Muhammet M. Öztürk; John P. Andrews; Joseph Kim; Behnam Rezai Jahromi; Mika Niemelä; Martin Lehecka; Aunoy Poddar; Thomas Wälchli; Joshua S. Catapano; Rajeev D. Sen; Michael R. Levitt; Daniel L. Cooke; Kazim Narsinh; Ruchira M. Jha; Tomoki Hashimoto; S. Paul Oh; Eric J. Huang; Edward F. Chang; Daniel A. Lim; Adib A. Abla; Andrew C. Yang; Tomasz J. Nowakowski; Michael T. Lawton; Ethan A. Winkler
errShare
errSave
Stress-relaxing granular bioprinting materials enable complex and uniform organoid self-organization
errNature Materials
IF38.5
err2026-03-10
err0
errOAAI
errAustin J. Graham; Michelle W. L. Khoo; Vasudha Srivastava; Sara Viragova; Honesty Kim; Kavita Parekh; Kelsey M. Hennick; Malia Bird; Nadine Goldhammer; Jie Zeng Yu; Grace Hu; Natasha T. Brinkley; Lucas Pardo; Jasmine S. Amaya; Cameron D. Morley; Nishant Chadha; Paul Lebel; Sanjay Kumar; Jennifer M. Rosenbluth; Tomasz J. Nowakowski; Ovijit Chaudhuri; Ophir Klein; Rafael Gómez-Sjöberg; Zev J. Gartner
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errSave
Multidimensional profiling of heterogeneity in supratentorial ependymomas
errNature
IF48.5
err2026-03-01
err1
PREAI
errJeong, Daeun; Danielli, Sara G.; Maass, Kendra K.; Ghasemi, David R.; Tetzlaff, Svenja K.; Reyhan, Ekin; Jiang, Li; Katiyar, Shashank; Sundheimer, Julia K.; Lo Cascio, Costanza; Neyazi, Sina; De Biagi-Junior, Carlos Alberto Oliveira; Couvillon, Elsa; Castellani, Sophia; Pazyra-Murphy, Maria; Mullally, Matthew; Dehler, Marc Philipp; Englinger, Bernhard; Nascimento, Andrezza; Cruzeiro, Gustavo Alencastro Veiga; Marques, Joana G.; Haase, Rebecca D.; Nguyen, Cuong M.; Baumgartner, Alicia-Christina; Rozowsky, Jacob S.; Hack, Olivia A.; Shaw, Mckenzie L.; Lotsch-Gojo, Daniela; Bruckner, Katharina; Korshunov, Andrey; Pfister, Stefan M.; Kool, Marcel; Nowakowski, Tomasz J.; Gojo, Johannes; Baird, Lissa; Alexandrescu, Sanda; Pajtler, Kristian W.; Venkataramani, Varun; Filbin, Mariella G.
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Using the linear references from the pangenome to discover missing autism variants
errNature Communications
IF15.7
err2026-01-23
err0
errOAAI
errYang Sui; Jiadong Lin; Michelle D. Noyes; Youngjun Kwon; Isaac Wong; Nidhi Koundinya; William T. Harvey; Mei Wu; Kendra Hoekzema; Katherine M. Munson; Gage H. Garcia; Jordan Knuth; Julie Wertz; Tianyun Wang; Kelsey Hennick; Druha Karunakaran; Rafael A. Polo Prieto; Rebecca Meyer-Schuman; Fisher Cherry; Davut Pehlivan; Bernhard Suter; Jonas A. Gustafson; Danny E. Miller; Hanna Berk-Rauch; Tomasz J. Nowakowski; Aravinda Chakravarti; Huda Y. Zoghbi; Evan E. Eichler
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errSave
Dissecting gene regulatory networks governing human cortical cell fate
errNature
IF48.5
err2026-01-21
err0
errOAAI
errJingwen W. Ding; Chang N. Kim; Megan S. Ostrowski; Yashodara Abeykoon; Bryan J. Pavlovic; Jenelle L. Wallace; Nathan K. Schaefer; Tomasz J. Nowakowski; Alex A. Pollen
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errSave
Microscale maps of bursting dynamics across human hippocampal slices from patients with epilepsy
errJournal of Neurophysiology
IF2.1
err2026-01-12
err0
PREAI
errElliott, Matthew A. T.; Andrews, John P.; Van Der Molen, Tjitse; Geng, Jinghui; Spaeth, Alex; Toledo, Anna; Voitiuk, Kateryna; Core, Cordero; Gillespie, Thomas; Sinervo, Ari; Parks, David F.; Robbins, Ash; Solis, Daniel; Chang, Edward F.; Nowakowski, Tomasz Jan; Teodorescu, Mircea; Haussler, David; Sharf, Tal
errShare
errSave
The new frontier in understanding human and mammalian brain development
errNature
IF48.5
err2025-11-05
err0
PREAI
errTomasz J. Nowakowski; Patricia R. Nano; Katherine S. Matho; Xiaoyin Chen; Emily K. Corrigan; Wubin Ding; Yuan Gao; Matthew Heffel; Jaikishan Jayakumar; Harris S. Kaplan; Fae N. Kronman; Rothem Kovner; Camiel C. A. Mannens; Mengyi Song; Marilyn R. Steyert; Sridevi Venkatesan; Jenelle L. Wallace; Li Wang; Jonathan M. Werner; Di Zhang; Guohua Yuan; Guolong Zuo; Seth A. Ament; Carlo Colantuoni; Catherine Dulac; Rong Fan; Jesse Gillis; Arnold R. Kriegstein; Fenna M. Krienen; Yongsoo Kim; Sten Linnarsson; Partha P. Mitra; Alex A. Pollen; Nenad Sestan; Daniel J. Tward; Cindy T. J. van Velthoven; Zizhen Yao; Aparna Bhaduri; Hongkui Zeng
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errSave
Lineage-resolved atlas of the developing human cortex
errNature
IF48.5
err2025-11-05
err0
errOAAI
errMatthew G. Keefe; Marilyn R. Steyert; Tomasz J. Nowakowski
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errSave
DECIPHERING CELLULAR TRANSLATION CONTROL IN NEURON-GBM INTERACTIONS
errNEURO-ONCOLOGY
IF13.4
err2025-11-01
err0
errOAAI
errGuney, Ekin; Dabrowska, Adrianna; Magee, Nathan; Phua, Ronald; Wang, Linyu; Baker, Donovan L.; Lee, Kevin Y.; Cadwell, Cathryn R.; Escoubas, Caroline C.; Williams, Marcus; Nowakowski, Tomasz J.; Krishna, Saritha; Hervey-Jumper, Shawn L.; Ruggero, Davide; Weiss, William A.
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errSave
G-protein-coupled receptor ADGRG1 drives a protective microglial state in Alzheimer’s disease through MYC activation
errNeuron
IF15
err2025-10-31
err0
PREAI
errBeika Zhu; Andi Wangzhou; Diankun Yu; Tao Li; Rachael Schmidt; Stacy L. De Florencio; Lauren Chao; Alicia L. Thurber; Minqi Zhou; Zeina Msheik; Yonatan Perez; Lea T. Grinberg; Salvatore Spina; Richard M. Ransohoff; Arnold R. Kriegstein; William W. Seeley; Tomasz Nowakowski; Xianhua Piao
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errSave
A RECURRENT SINGLE NUCLEOTIDE MUTATION IN TBR1 PROMOTES STEMNESS IN GROUP 4 MEDULLOBLASTOMA
errNEURO-ONCOLOGY
IF13.4
err2025-10-01
err0
errOAAI
errLivingston, B.; Hennick, K.; Erickson, A.; Nowakowski, T.; Mcglade, J.; Taylor, M.
errShare
errSave
Microglia regulate GABAergic neurogenesis in prenatal human brain through IGF1
errNature
IF48.5
err2025-08-06
err0
errOAAI
errDiankun Yu; Samhita Jain; Andi Wangzhou; Beika Zhu; Wenyuan Shao; Elena J. Coley-O’Rourke; Stacy De Florencio; JaeYeon Kim; Jennifer Ja-Yoon Choi; Mercedes F. Paredes; Tomasz J. Nowakowski; Eric J. Huang; Xianhua Piao
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errSave
G-protein-coupled receptor ADGRG1 drives a protective microglial state in Alzheimer's disease through MYC activation
errNeuron
IF15
err2025-07-25
err0
PREAI
errBeika Zhu; Andi Wangzhou; Diankun Yu; Tao Li; Rachael Schmidt; Stacy L. De Florencio; Lauren Chao; Alicia L. Thurber; Minqi Zhou; Zeina Msheik; Yonatan Perez; Lea T. Grinberg; Salvatore Spina; Richard M. Ransohoff; Arnold R. Kriegstein; William W. Seeley; Tomasz Nowakowski; Xianhua Piao
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errSave
Engrafted nitrergic neurons derived from hPSCs improve gut dysmotility in mice
errNature
IF48.5
err2025-06-25
err0
errOAAI
errHoma Majd; Ryan M. Samuel; Andrius Cesiulis; Jonathan T. Ramirez; Ali Kalantari; Kevin Barber; Sina Farahvashi; Zaniar Ghazizadeh; Alireza Majd; Angeline K. Chemel; Mikayla N. Richter; Subhamoy Das; Jacqueline L. Bendrick; Matthew G. Keefe; Jeffrey Wang; Rahul K. Shiv; Samyukta Bhat; Matvei Khoroshkin; Johnny Yu; Tomasz J. Nowakowski; Kwun Wah Wen; Hani Goodarzi; Nikhil Thapar; Julia A. Kaltschmidt; Conor J. McCann; Faranak Fattahi
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CRISPRi-based screen of autism spectrum disorder risk genes in microglia uncovers roles of ADNP in microglia endocytosis and synaptic pruning
errMOLECULAR PSYCHIATRY
IF10.1
err2025-04-06
err0
errOAAI
errTeter, Olivia M.; Mcquade, Amanda; Hagan, Venus; Liang, Weiwei; Draeger, Nina M.; Sattler, Sydney M.; Holmes, Brandon B.; Castillo, Vincent Cele; Papakis, Vasileios; Leng, Kun; Boggess, Steven; Nowakowski, Tomasz J.; Wells, James; Kampmann, Martin
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errSave
Optogenetic Modulation of Network Activity in Human Hippocampus
errNEUROSURGERY
IF3.9
err2025-04-01
err0
PREAI
errAndrews, John P.; Geng, Sury Jinghui; Voitiuk, Kateryna; Elliot, Matthew; Shin, David; Robbins, Ash; Spaeth, Alex; Wang, Albert; Li, Lin; Solis, Daniel; Keefe, Matthew; Sevetson, Jessica; Jesus, Julio Rivera-de; Donohue, Kevin; Larson, Hailey; Ehrlich, Drew; Auguste, Kurtis; Salama, Sofie; Sohal, Vikaas; Sharf, Tal; Haussler, David; Cadwell, Cathryn; Schafer, David; Chang, Edward; Teodorescu, Mircea; Nowakowski, Tomasz
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errSave
An organotypic atlas of human vascular cells
errNATURE MEDICINE
IF50
err2024-11-20
err0
PREAI
errBarnett, Sam N.; Cujba, Ana-Maria; Yang, Lu; Maceiras, Ana Raquel; Li, Shuang; Kedlian, Veronika R.; Pett, J. Patrick; Polanski, Krzysztof; Miranda, Antonio M. A.; Xu, Chuan; Cranley, James; Kanemaru, Kazumasa; Lee, Michael; Mach, Lukas; Perera, Shani; Tudor, Catherine; Joseph, Philomeena D.; Pritchard, Sophie; Toscano-Rivalta, Rebecca; Tuong, Zewen K.; Bolt, Liam; Petryszak, Robert; Prete, Martin; Cakir, Batuhan; Huseynov, Alik; Sarropoulos, Ioannis; Chowdhury, Rasheda A.; Elmentaite, Rasa; Madissoon, Elo; Oliver, Amanda J.; Campos, Lia; Brazovskaja, Agnieska; Gomes, Tomas; Treutlein, Barbara; Kim, Chang N.; Nowakowski, Tomasz J.; Meyer, Kerstin B.; Randi, Anna M.; Noseda, Michela; Teichmann, Sarah A.
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MULTIDIMENSIONAL PROFILING OF TUMOR CELL HETEROGENEITY REVEALS CELL-LINEAGE SPECIFIC FUNCTIONS IN SUPRATENTORIAL EPENDYMOMAS
errNEURO-ONCOLOGY
IF13.4
err2024-11-11
err0
PREAI
errJeong, Daeun; Danielli, Sara G.; Maass, Kendra; Ghasemi, David R.; Tetzlaff, Svenja K.; Reyhan, Ekin; de Biagi-Junior, Carlos Alberto Oliveira; Lo Cascio, Costanza; Neyazi, Sina; Nascimento, Andrezza; Haase, Rebecca; Englinger, Bernhard; Jiang, Li; Nguyen, Cuong M.; Baumgartner, Alicia-Christina; Castellani, Sophia; Rozowsky, Jacob S.; Hack, Olivia A.; Shaw, McKenzie L.; Lotsch-Gojo, Daniela; Bruckner, Katharina; Pfister, Stefan M.; Kool, Marcel; Nowakowski, Tomasz; Gojo, Johannes; Baird, Lissa; Alexandrescu, Sanda; Pajtler, Kristian W.; Venkataramani, Varun; Filbin, Mariella G.
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errSave
Thalamocortical organoids enable in vitro modeling of 22q11.2 microdeletion associated with neuropsychiatric disorders
errCELL STEM CELL
IF20.4
err2024-03-01
err6
PREAI
errShin, David; Kim, Chang N.; Ross, Jayden; Hennick, Kelsey M.; Wu, Sih-Rong; Paranjape, Neha; Leonard, Rachel; Wang, Jerrick C.; Keefe, Matthew G.; Pavlovic, Bryan J.; Donohue, Kevin C.; Moreau, Clara; Wigdor, Emilie M.; Larson, H. Hanh; Allen, Denise E.; Cadwell, Cathryn R.; Bhaduri, Aparna; Popova, Galina; Bearden, Carrie E.; Pollen, Alex A.; Jacquemont, Sebastien; Sanders, Stephan J.; Haussler, David; Wiita, Arun P.; Frost, Nicholas A.; Sohal, Vikaas S.; Nowakowski, Tomasz J.
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Optimal trade-off control in machine learning-based library design, with application to adeno-associated virus (AAV) for gene therapy
errSCIENCE ADVANCES
IF12.5
err2024-01-26
err13
errOAAI
errZhu, Danqing; Brookes, David H.; Busia, Akosua; Carneiro, Ana; Fannjiang, Clara; Popova, Galina; Shin, David; Donohue, Kevin C.; Lin, Li F.; Miller, Zachary M.; Williams, Evan R.; Chang, Edward F.; Nowakowski, Tomasz J.; Listgarten, Jennifer; Schaffer, David V.
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Mark J. Daly
H-index: 224 · Papers: 1.2K
E
Evan E. Eichler
H-index: 191 · Papers: 864
D
David Haussler
H-index: 175 · Papers: 720
B
Benjamin M. Neale
H-index: 160 · Papers: 798
S
Stefan M. Pfister
H-index: 159 · Papers: 2.1K
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