Not logged inSpatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
Avraham-Davidi, Inbal; Mages, Simon; Klughammer, Johanna; Moriel, Noa; Imada, Shinya; Hofree, Matan; Murray, Evan; Chen, Jonathan; Pelka, Karin; Mehta, Arnav; Boland, Genevieve M.; Delorey, Toni; Caplan, Leah; Dionne, Danielle; Strasser, Robert; Lalakova, Jana; Niesnerova, Anezka; Xu, Hao; Rouault, Morgane; Tirosh, Itay; Nir, Hacohen; Chen, Fei; Yilmaz, Omer; Roper, Jatin; Rozenblatt-Rosen, Orit; Nitzan, Mor; Regev, Aviv .png)
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SaveSlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics dataZhang, Diane; Segerstolpe, Asa; Slyper, Michal; Waldman, Julia; Murray, Evan; Strasser, Robert; Watter, Jan; Cohen, Ofir; Ashenberg, Orr; Abravanel, Daniel; Jane-Valbuena, Judit; Mages, Simon; Lako, Ana; Helvie, Karla; Rozenblatt-Rosen, Orit; Rodig, Scott; Chen, Fei; Wagle, Nikhil; Regev, Aviv; Klughammer, Johanna Share Save A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological featuresKlughammer, Johanna; Abravanel, Daniel L.; Segerstolpe, Asa; Blosser, Timothy R.; Goltsev, Yury; Cui, Yi; Goodwin, Daniel R.; Sinha, Anubhav; Ashenberg, Orr; Slyper, Michal; Vigneau, Sebastien; Jane-Valbuena, Judit; Alon, Shahar; Caraccio, Chiara; Chen, Judy; Cohen, Ofir; Cullen, Nicole; DelloStritto, Laura K.; Dionne, Danielle; Files, Janet; Frangieh, Allison; Helvie, Karla; Hughes, Melissa E.; Inga, Stephanie; Kanodia, Abhay; Lako, Ana; MacKichan, Colin; Mages, Simon; Moriel, Noa; Murray, Evan; Napolitano, Sara; Nguyen, Kyleen; Nitzan, Mor; Ortiz, Rebecca; Patel, Miraj; Pfaff, Kathleen L.; Porter, Caroline B. M.; Rotem, Asaf; Strauss, Sarah; Strasser, Robert; Thorner, Aaron R.; Turner, Madison; Wakiro, Isaac; Waldman, Julia; Wu, Jingyi; Zanudo, Jorge Gomez Tejeda; Zhang, Diane; Lin, Nancy U.; Tolaney, Sara M.; Winer, Eric P.; Boyden, Edward S.; Chen, Fei; Nolan, Garry P.; Rodig, Scott J.; Zhuang, Xiaowei; Rozenblatt-Rosen, Orit; Johnson, Bruce E.; Regev, Aviv; Wagle, Nikhil Share Save B cells are associated with aggressive Cases of Cutaneous T cell Lymphoma and a distinct spatio-temporal composition of the tumor microenviroenmentOganesian, S.; Rudelius, M.; Piontek, G.; Posch, C.; Weigert, O.; Heide, M.; Krebs, S.; Blum, H.; Klughammer, J.; Mages, S.; Watter, J.; Kirmaier, M.; Hadzic, A.; Funk, M.; Tu, J.; Carboniero, A.; Vona, L.; von Bergwelt-Baildon, M.; Theurich, S. Share Save UNC93B1 variants underlie TLR7-dependent autoimmunityWolf, Christine; Lim, Ee Lyn; Mokhtari, Mohammad; Kind, Barbara; Odainic, Alexandru; Lara-Villacanas, Eusebia; Koss, Sarah; Mages, Simon; Menzel, Katharina; Engel, Kerstin; Dueckers, Gregor; Bernbeck, Benedikt; Schneider, Dominik T.; Siepermann, Kathrin; Niehues, Tim; Goetzke, Carl Christoph; Durek, Pawel; Minden, Kirsten; Doerner, Thomas; Stittrich, Anna; Szelinski, Franziska; Guerra, Gabriela Maria; Massoud, Mona; Bieringer, Markus; Mann, Carina C. de Oliveira; Beltran, Eduardo; Kallinich, Tilmann; Mashreghi, Mir-Farzin; Schmidt, Susanne V.; Latz, Eicke; Klughammer, Johanna; Majer, Olivia; Lee-Kirsch, Min Ae Share Save Emergence of division of labor in tissues through cell interactions and spatial cuesAdler, Miri; Moriel, Noa; Goeva, Aleksandrina; Avraham-Davidi, Inbal; Mages, Simon; Adams, Taylor S.; Kaminski, Naftali; Macosko, Evan Z.; Regev, Aviv; Medzhitov, Ruslan; Nitzan, Mor Share Save TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omicsMages, Simon; Moriel, Noa; Avraham-Davidi, Inbal; Murray, Evan; Watter, Jan; Chen, Fei; Rozenblatt-Rosen, Orit; Klughammer, Johanna; Regev, Aviv; Nitzan, Mor Share Save Share Save Axion cosmology, lattice QCD and the dilute instanton gasBorsanyi, Sz.; Dierigl, M.; Fodor, Z.; Katz, S. D.; Mages, S. W.; Nogradi, D.; Redondo, J.; Ringwald, A.; Szabo, K. K. Share Save Charmonium spectral functions from 2+1 flavour lattice QCDBorsanyi, Szabolcs; Duerr, Stephan; Fodor, Zoltan; Hoelbling, Christian; Katz, Sandor D.; Krieg, Stefan; Mages, Simon; Nogradi, Daniel; Pasztor, Attila; Schaefer, Andreas; Szabo, Kalman K.; Toth, Balint C.; Trombitas, Norbert Share Save 
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