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Ellis Patrick

charles perkins centre

31H-index
190Paper Count
5.8KCitation Count
Published Papers 53
Publication Date
Immunospatial tumor microenvironment analysis identifies B cell aggregates associated with recurrence-free survival in primary melanoma
err2026-08-20
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errGrace H. Attrill; Nicholas Canete; Yuzhou Feng; Eva R. Shteinman; Xinyu Bai; Camelia Quek; Tuba Nur Gide; Felix Marsh-Wakefield; Ellis Patrick; Anna S. Trigos; Umaimainthan Palendira; Georgina V. Long; Richard A. Scolyer; Ismael A. Vergara; James S. Wilmott
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A titin truncating variant linked to atrial fibrillation increases atrial profibrotic signalling and cholinergic sensitivity
err2026-05-27
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errMax J Cumberland; Albert Dasí; Naeramit Sontayananon; Alan Marcus; Alex Qin; Leto Riebel; Jonas Euchner; Amar J Azad; Caitlin Hall; Christopher O’Shea; James G W Smith; Charikleia Papadopoulou; Eric A Miska; Davor Pavlovic; Ellis Patrick; James Chong; Paulus Kirchhof; Chris Denning; Benjamin Davies; Blanca Rodriguez; Andrew P Holmes; Katja Gehmlich
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Interpretable deep generative ensemble learning for single-cell omics with Hydra
err2026-04-11
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errManoj M Wagle; Chunlei Liu; Zunpeng Liu; Yongheng Wang; Manolis Kellis; Ellis Patrick; Pengyi Yang
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Kontextual reframes analysis of spatial omics data and reveals consistent cell relationships across images
err2025-09-15
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errFarhan Ameen; Nick Robertson; David M. Lin; Shila Ghazanfar; Ellis Patrick
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SpatioMark: quantifying the impact of spatial proximity on cell phenotype
err2025-08-01
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errIyengar, Sourish S.; Qin, Alex R.; Robertson, Nicholas; Harman, Andrew N.; Patrick, Ellis
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The spatial biology of HIV infection
err2025-01-24
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errHu, Kevin; O'Neil, Thomas R.; Baharlou, Heeva; Austin, Paul J.; Karrasch, Jackson F.; Sarkawt, Lara; Li, Yuchen; Bertram, Kirstie M.; Cunningham, Anthony L.; Patrick, Ellis; Harman, Andrew N.
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Decoding the hallmarks of allograft dysfunction with a comprehensive pan-organ transcriptomic atlas
err2024-09-16
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PREAI
errRobertson, Harry; Li, Jennifer; Jiminez-Vera, Elvira; Yang, Jean; O'Connell, Philip; Patrick, Ellis; Rogers, Natasha
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Decoding the hallmarks of allograft dysfunction with a comprehensive pan-organ transcriptomic atlas
err2024-06-18
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errRobertson, Harry; Kim, Hani Jieun; Li, Jennifer; Robertson, Nicholas; Robertson, Paul; Jimenez-Vera, Elvira; Ameen, Farhan; Tran, Andy; Trinh, Katie; O'Connell, Philip J.; Yang, Jean Y. H.; Rogers, Natasha M.; Patrick, Ellis
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Thrombospondin-1 Drives Cardiac Remodeling in Chronic Kidney Disease
err2024-05-01
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errJulovi, Sohel M.; Trinh, Katie; Robertson, Harry; Xu, Cuicui; Minhas, Nikita; Viswanathan, Seethalakshmi; Patrick, Ellis; Horowitz, John D.; Meijles, Daniel N.; Rogers, Natasha M.
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Construction and optimization of multi-platform precision pathways for precision medicine
err2024-02-21
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errTran, Andy; Wang, Andy; Mickaill, Jamie; Strbenac, Dario; Larance, Mark; Vernon, Stephen T.; Grieve, Stuart M.; Figtree, Gemma A.; Patrick, Ellis; Yang, Jean Yee Hwa
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BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data
err2024-01-13
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errFu, Xiaohang; Lin, Yingxin; Lin, David M.; Mechtersheimer, Daniel; Wang, Chuhan; Ameen, Farhan; Ghazanfar, Shila; Patrick, Ellis; Kim, Jinman; Yang, Jean Y. H.
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Classification of the tumor immune microenvironment and associations with outcomes in patients with metastatic melanoma treated with immunotherapies
err2023-10-21
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errAdegoke, Nurudeen A.; Gide, Tuba N.; Mao, Yizhe; Quek, Camelia; Patrick, Ellis; Carlino, Matteo S.; Lo, Serigne N.; Menzies, Alexander Maxwell; Pires da Silva, Ines; Vergara, Ismael A.; Long, Georgina; Scolyer, Richard A.; Wilmott, James S.
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Persistence of ex vivo expanded tumour and pathogen specific T-cells after allogeneic stem cell transplant for myeloid malignancies (the INTACT study)
errLEUKEMIA
IF13.4
err2023-09-15
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errJiang, Wei; Avdic, Selmir; Lee, Koon H.; Street, Janine; Castellano-Gonzalez, Gloria; Simms, Renee; Clancy, Leighton E.; Blennerhassett, Richard; Patrick, Ellis; Chan, Adam S.; McGuire, Helen M.; Myers, Nadav; Gloss, Brian S.; Gabriel, Melissa; Bateman, Caroline M.; Micklethwaite, Ken; Gottlieb, David J.; Blyth, Emily
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Non-invasive diagnosis of early cutaneous squamous cell carcinoma
err2023-09-09
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errAzimi, Ali; Jabbour, Steven; Patrick, Ellis; Fernandez-Penas, Pablo
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Tolerogenic dendritic cells protect against acute kidney injury
err2023-09-01
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PREAI
errLi, Jennifer S. Y.; Robertson, Harry; Trinh, Katie; Raghubar, Arti M.; Nguyen, Quan; Matigian, Nicholas; Patrick, Ellis; Thomson, Angus W.; Mallett, Andrew J.; Rogers, Natasha M.
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Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
err2023-07-17
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errLin, Yingxin; Cao, Yue; Willie, Elijah; Patrick, Ellis; Yang, Jean Y. H.
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Defining early changes in Alzheimer's disease from RNA sequencing of brain regions differentially affected by pathology (vol 11, 4865, 2021)
err2023-06-20
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errGuennewig, Boris; Lim, Julia; Marshall, Lee; McCorkindale, Andrew N.; Paasila, Patrick J.; Patrick, Ellis; Kril, Jillian J.; Halliday, Glenda M.; Cooper, Antony A.; Sutherland, Greg T.
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Proteomic profiling of cutaneous melanoma explains the aggressiveness of distant organ metastasis
err2023-04-21
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errAzimi, Ali; Patrick, Ellis; Teh, Rachel; Kim, Jennifer; Fernandez-Penas, Pablo
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Spatial mapping reveals granuloma diversity and histopathological superstructure in human tuberculosis
err2023-03-15
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errSawyer, Andrew J.; Patrick, Ellis; Edwards, Jarem; Wilmott, James S.; Fielder, Timothy; Yang, Qianting; Barber, Daniel L.; Ernst, Joel D.; Britton, Warwick J.; Palendira, Umaimainthan; Chen, Xinchun; Feng, Carl G.
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Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables
err2023-03-01
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errFu, Xiaohang; Patrick, Ellis; Yang, Jean Y. H.; Feng, David Dagan; Kim, Jinman
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