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Linking the gut microbiome to host DNA methylation by a discovery and replication epigenome-wide association study Demirkan, Ayse; van Dongen, Jenny; Finnicum, Casey T.; Westra, Harm-Jan; Jankipersadsing, Soesma; Willemsen, Gonneke; Ijzerman, Richard G.; Boomsma, Dorret I.; Ehli, Erik A.; Bonder, Marc Jan; Fu, Jingyuan; Franke, Lude; Wijmenga, Cisca; de Geus, Eco J. C.; Kurilshikov, Alexander; Zhernakova, Alexandra Share Save
An iPSC-derived small intestine-on-chip with self-organizing epithelial, mesenchymal, and neural cells Moerkens, Renee; Mooiweer, Joram; Ramirez-Sanchez, Aaron D.; Oelen, Roy; Franke, Lude; Wijmenga, Cisca; Barrett, Robert J.; Jonkers, Iris H.; Withoff, Sebo Share Save
Potential biomarkers for multiple sclerosis stage from targeted proteomics and microRNA sequencing Tan, Ineke L.; Modderman, Rutger; Stachurska, Anna; Almeida, Rodrigo; de Vries, Riemer; Heersema, Dorothea J.; Gacesa, Ranko; Wijmenga, Cisca; Jonkers, Iris H.; Meilof, Jan F.; Withoff, Sebo Share Save
Genetic mapping across autoimmune diseases reveals shared associations and mechanisms Lincoln, Matthew R.; Connally, Noah; Axisa, Pierre-Paul; Gasperi, Christiane; Mitrovic, Mitja; van Heel, David; Wijmenga, Cisca; Withoff, Sebo; Jonkers, Iris H.; Padyukov, Leonid; Beecham, Ashley H.; Patsopoulos, Nikolaos A.; Cotsapas, Chris; Booth, David; Goris, An; Oturai, Annette; Saarela, Janna; Fontaine, Betrand; Hemmer, Bertrand; Claes, Martin; Zipp, Frauke; D'Alfonso, Sandra; Martinelli-Boneschi, Filippo; Taylor, Bruce; Harbo, Hanne F.; Kockum, Ingrid; Hillert, Jan; Olsson, Tomas; Oksenberg, Jorge R.; Hintzen, Rogier; Barcellos, Lisa F.; Alfredsson, Lars; Esposito, Federica; Martin, Roland; Haines, Jonathan L.; Pericak-Vance, Margaret A.; Ivinson, Adrian J.; Stewart, Graeme; Hafler, David; Hauser, Stephen L.; Compston, Alastair; Mcvean, Gil; De Jager, Philip; Sawcer, Stephen J.; Mccauley, Jakob L.; Rich, Stephen S.; Graham, Robert R.; Gaffney, Patrick M.; Langefeld, Carl D.; Vyse, Timothy J.; Hafler, David A.; Chun, Sung; Sunyaev, Shamil R.; Cotsapas, Chris Share Save
Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses Fernandez-Pato, Asier; Sinha, Trishla; Gacesa, Ranko; Andreu-Sanchez, Sergio; Gois, Milla F. Brandao; Gelderloos-Arends, Jody; Jansen, Dianne B. H.; Kruk, Marloes; Jaeger, Martin; Joosten, Leo A. B.; Netea, Mihai G.; Weersma, Rinse K.; Wijmenga, Cisca; Harmsen, Hermie J. M.; Fu, Jingyuan; Zhernakova, Alexandra; Kurilshikov, Alexander Share Save
Gut feelings: the relations between depression, anxiety, psychotropic drugs and the gut microbiome Brushett, S.; Gacesa, R.; Vila, A. Vich; Gois, M. F. Brandao; Andreu-Sanchez, S.; Swarte, J. C.; Klaassen, M. A. Y.; Collij, V.; Sinha, T.; Bolte, L. A.; Wu, J.; Swertz, M.; de Kroon, M. L. A.; Reijneveld, S. A.; Wijmenga, C.; Weersma, R. K.; Fu, J.; van Loo, H. M.; Kurilshikov, A.; Zhernakova, A. Share Save
Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity Eckold, Clare; van Doorn, Cassandra L. R.; Ruslami, Rovina; Ronacher, Katharina; Riza, Anca-Lelia; van Veen, Suzanne; Lee, Ji-Sook; Kumar, Vinod; Kerry-Barnard, Sarah; Malherbe, Stephanus T.; Kleynhans, Leanie; Stanley, Kim; Joosten, Simone A.; Critchley, Julia A.; Hill, Philip C.; van Crevel, Reinout; Wijmenga, Cisca; Haks, Marielle C.; Ioana, Mihai; Alisjahbana, Bachti; Walzl, Gerhard; Ottenhoff, Tom H. M.; Dockrell, Hazel M.; Vianello, Eleonora; Cliff, Jacqueline M.; TANDEM Consortium Share Save
Impact of occupational pesticide exposure on the human gut microbiome Gois, Milla F. Brandao; Fernandez-Pato, Asier; Huss, Anke; Gacesa, Ranko; Wijmenga, Cisca; Weersma, Rinse K.; Fu, Jingyuan; Vermeulen, Roel C. H.; Zhernakova, Alexandra; Lenters, Virissa C.; Kurilshikov, Alexander Share Save
Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy Kiryluk, Krzysztof; Sanchez-Rodriguez, Elena; Zhou, Xu-Jie; Zanoni, Francesca; Liu, Lili; Mladkova, Nikol; Khan, Atlas; Marasa, Maddalena; Zhang, Jun Y.; Balderes, Olivia; Sanna-Cherchi, Simone; Bomback, Andrew S.; Canetta, Pietro A.; Appel, Gerald B.; Radhakrishnan, Jai; Trimarchi, Hernan; Sprangers, Ben; Cattran, Daniel C.; Reich, Heather; Pei, York; Ravani, Pietro; Galesic, Kresimir; Maixnerova, Dita; Tesar, Vladimir; Stengel, Benedicte; Metzger, Marie; Canaud, Guillaume; Maillard, Nicolas; Berthoux, Francois; Berthelot, Laureline; Pillebout, Evangeline; Monteiro, Renato; Nelson, Raoul; Wyatt, Robert J.; Smoyer, William; Mahan, John; Samhar, Al-Akash; Hidalgo, Guillermo; Quiroga, Alejandro; Weng, Patricia; Sreedharan, Raji; Selewski, David; Davis, Keefe; Kallash, Mahmoud; Vasylyeva, Tetyana L.; Rheault, Michelle; Chishti, Aftab; Ranch, Daniel; Wenderfer, Scott E.; Samsonov, Dmitry; Claes, Donna J.; Akchurin, Oleh; Goumenos, Dimitrios; Stangou, Maria; Nagy, Judit; Kovacs, Tibor; Fiaccadori, Enrico; Amoroso, Antonio; Barlassina, Cristina; Cusi, Daniele; Del Vecchio, Lucia; Battaglia, Giovanni Giorgio; Bodria, Monica; Boer, Emanuela; Bono, Luisa; Boscutti, Giuliano; Caridi, Gianluca; Lugani, Francesca; Ghiggeri, GianMarco; Coppo, Rosanna; Peruzzi, Licia; Esposito, Vittoria; Esposito, Ciro; Feriozzi, Sandro; Polci, Rosaria; Frasca, Giovanni; Galliani, Marco; Garozzo, Maurizio; Mitrotti, Adele; Gesualdo, Loreto; Granata, Simona; Zaza, Gianluigi; Londrino, Francesco; Magistroni, Riccardo; Pisani, Isabella; Magnano, Andrea; Marcantoni, Carmelita; Messa, Piergiorgio; Mignani, Renzo; Pani, Antonello; Ponticelli, Claudio; Roccatello, Dario; Salvadori, Maurizio; Salvi, Erica; Santoro, Domenico; Gembillo, Guido; Savoldi, Silvana; Spotti, Donatella; Zamboli, Pasquale; Izzi, Claudia; Alberici, Federico; Delbarba, Elisa; Florczak, Michal; Krata, Natalia; Mucha, Krzysztof; Paczek, Leszek; Niemczyk, Stanislaw; Moszczuk, Barbara; Panczyk-Tomaszewska, Malgorzata; Mizerska-Wasiak, Malgorzata; Perkowska-Ptasinska, Agnieszka; Baczkowska, Teresa; Durlik, Magdalena; Pawlaczyk, Krzysztof; Sikora, Przemyslaw; Zaniew, Marcin; Kaminska, Dorota; Krajewska, Magdalena; Kuzmiuk-Glembin, Izabella; Heleniak, Zbigniew; Bullo-Piontecka, Barbara; Liberek, Tomasz; Debska-Slizien, Alicja; Hryszko, Tomasz; Materna-Kiryluk, Anna; Miklaszewska, Monika; Szczepanska, Maria; Dyga, Katarzyna; Machura, Edyta; Siniewicz-Luzenczyk, Katarzyna; Pawlak-Bratkowska, Monika; Tkaczyk, Marcin; Runowski, Dariusz; Kwella, Norbert; Drozdz, Dorota; Habura, Ireneusz; Kronenberg, Florian; Prikhodina, Larisa; van Heel, David; Fontaine, Bertrand; Cotsapas, Chris; Wijmenga, Cisca; Franke, Andre; Annese, Vito; Gregersen, Peter K.; Parameswaran, Sreeja; Weirauch, Matthew; Kottyan, Leah; Harley, John B.; Suzuki, Hitoshi; Narita, Ichiei; Goto, Shin; Lee, Hajeong; Kim, Dong Ki; Kim, Yon Su; Park, Jin-Ho; Cho, BeLong; Choi, Murim; Van Wijk, Ans; Huerta, Ana; Ars, Elisabet; Ballarin, Jose; Lundberg, Sigrid; Vogt, Bruno; Mani, Laila-Yasmin; Caliskan, Yasar; Barratt, Jonathan; Abeygunaratne, Thilini; Kalra, Philip A.; Gale, Daniel P.; Panzer, Ulf; Rauen, Thomas; Floege, Juergen; Schlosser, Pascal; Ekici, Arif B.; Eckardt, Kai-Uwe; Chen, Nan; Xie, Jingyuan; Lifton, Richard P.; Loos, Ruth J. F.; Kenny, Eimear E.; Ionita-Laza, Iuliana; Koettgen, Anna; Julian, Bruce A.; Novak, Jan; Scolari, Francesco; Zhang, Hong; Gharavi, Ali G. Share Save
Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire Andreu-Sanchez, Sergio; Bourgonje, Arno R.; Vogl, Thomas; Kurilshikov, Alexander; Leviatan, Sigal; Ruiz-Moreno, Angel J.; Hu, Shixian; Sinha, Trishla; Vila, Arnau Vich; Klompus, Shelley; Kalka, Iris N.; de Leeuw, Karina; Arends, Suzanne; Jonkers, Iris; Withoff, Sebo; Brouwer, Elisabeth; Weinberger, Adina; Wijmenga, Cisca; Segal, Eran; Weersma, Rinse K.; Fu, Jingyua; Zhernakova, Alexandra Share Save
Phage-display immunoprecipitation sequencing of the antibody epitope repertoire in inflammatory bowel disease reveals distinct antibody signatures Bourgonje, Arno R.; Andreu-Sanchez, Sergio; Vogl, Thomas; Hu, Shixian; Vila, Arnau Vich; Gacesa, Ranko; Leviatan, Sigal; Kurilshikov, Alexander; Klompus, Shelley; Kalka, Iris N.; van Dullemen, Hendrik M.; Weinberger, Adina; Visschedijk, Marijn C.; Festen, Eleonora A. M.; Faber, Klaas Nico; Wijmenga, Cisca; Dijkstra, Gerard; Segal, Eran; Fu, Jingyuan; Zhernakova, Alexandra; Weersma, Rinse K. Share Save
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Systematic analysis of relationships between plasma branched-chain amino acid concentrations and cardiometabolic parameters: an association and Mendelian randomization study Doestzada, Marwah; Zhernakova, Daria V.; C. L. van den Munckhof, Inge; Wang, Daoming; Kurilshikov, Alexander; Chen, Lianmin; Bloks, Vincent W.; van Faassen, Martijn; Rutten, Joost H. W.; Joosten, Leo A. B.; Netea, Mihai G.; Wijmenga, Cisca; Riksen, Niels P.; Zhernakova, Alexandra; Kuipers, Folkert; Fu, Jingyuan Share Save
Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome Chen, Lianmin; Zhernakova, Daria, V; Kurilshikov, Alexander; Andreu-Sanchez, Sergio; Wang, Daoming; Augustijn, Hannah E.; Vila, Arnau Vich; Weersma, Rinse K.; Medema, Marnix H.; Netea, Mihai G.; Kuipers, Folkert; Wijmenga, Cisca; Zhernakova, Alexandra; Fu, Jingyuan Share Save
Global Biobank Meta-analysis Initiative: Powering genetic discovery across human disease Zhou, Wei; Kanai, Masahiro; Wu, Kuan-Han H.; Rasheed, Humaira; Tsuo, Kristin; Hirbo, Jibril B.; Wang, Ying; Bhattacharya, Arjun; Zhao, Huiling; Namba, Shinichi; Surakka, Ida; Wolford, Brooke N.; Lo Faro, Valeria; Lopera-Maya, Esteban A.; Lall, Kristi; Fave, Marie-Julie; Partanen, Juulia J.; Chapman, Sine ad B.; Karjalainen, Juha; Kurki, Mitja; Maasha, Mutaamba; Brumpton, Ben M.; Chavan, Sameer; Chen, Tzu-Ting; Daya, Michelle; Ding, Yi; Feng, Yen-Chen A.; Guare, Lindsay A.; Gignoux, Christopher R.; Graham, Sarah E.; Hornsby, Whitney E.; Ingold, Nathan; Ismail, Said I.; Johnson, Ruth; Laisk, Triin; Lin, Kuang; Lv, Jun; Millwood, Iona Y.; Moreno-Grau, Sonia; Nam, Kisung; Palta, Priit; Pandit, Anita; Preuss, Michael H.; Saad, Chadi; Setia-Verma, Shefali; Thorsteinsdottir, Unnur; Uzunovic, Jasmina; Verma, Anurag; Zawistowski, Matthew; Zhong, Xue; Afifi, Nahla; Al-Dabhani, Kawthar M.; Al Thani, Asma; Bradford, Yuki; Campbell, Archie; Crooks, Kristy; de Bock, Geertruida H.; Damrauer, Scott M.; Douville, Nicholas J.; Finer, Sarah; Fritsche, Lars G.; Fthenou, Eleni; Gonzalez-Arroyo, Gilberto; Griffiths, Christopher J.; Guo, Yu; Hunt, Karen A.; Ioannidis, Alexander; Jansonius, Nomdo M.; Konuma, Takahiro; Lee, Ming Ta Michael; Lopez-Pineda, Arturo; Matsuda, Yuta; Marioni, Riccardo E.; Moatamed, Babak; Nava-Aguilar, Marco A.; Numakura, Kensuke; Patil, Snehal; Rafaels, Nicholas; Richmond, Anne; Rojas-Munoz, Agustin; Shortt, Jonathan A.; Straub, Peter; Tao, Ran; Vanderwerff, Brett; Vernekar, Manvi; Veturi, Yogasudha; Barnes, Kathleen C.; Boezen, Marike; Chen, Zhengming; Chen, Chia-Yen; Cho, Judy; Smith, George Davey; Finucane, Hilary K.; Franke, Lude; Gamazon, Eric R.; Ganna, Andrea; Gaunt, Tom R.; Ge, Tian; Huang, Hailiang; Huffman, Jennifer; Katsanis, Nicholas; Koskela, Jukka T.; Lajonchere, Clara; Law, Matthew H.; Li, Liming; Lindgren, Cecilia M.; Loos, Ruth J. F.; MacGregor, Stuart; Matsuda, Koichi; Olsen, Catherine M.; Porteous, David J.; Shavit, Jordan A.; Snieder, Harold; Takano, Tomohiro; Trembath, Richard C.; Vonk, Judith M.; Whiteman, David C.; Wicks, Stephen J.; Wijmenga, Cisca; Wright, John; Zheng, Jie; Zhou, Xiang; Awadalla, Philip; Boehnke, Michael; Bustamante, Carlos D.; Cox, Nancy J.; Fatumo, Segun; Geschwind, Daniel H.; Hayward, Caroline; Hveem, Kristian; Kenny, Eimear E.; Lee, Seunggeun; Lin, Yen-Feng; Mbarek, Hamdi; Magi, Reedik; Martin, Hilary C.; Medland, Sarah E.; Okada, Yukinori; Palotie, Aarno, V; Pasaniuc, Bogdan; Rader, Daniel J.; Ritchie, Marylyn D.; Sanna, Serena; Smoller, Jordan W.; Stefansson, Kari; van Heel, David A.; Walters, Robin G.; Zollner, Sebastian; Martin, Alicia R.; Willer, Cristen J.; Daly, Mark J.; Neale, Benjamin M. Share Save
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