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Albumin reprograms the B cell transcriptional landscape and improves neutrophil antimicrobial function in patients with decompensated cirrhosis Claria, Joan; Aguilar, Ferran; Lozano, Juan-Jose; Jimenez-Gracia, Laura; Nieto, Juan C.; Romero-Grimaldo, Berta; Marcos-Fa, Xavi; Giarracco, Emma; Weiss, Emmanuel; Trebicka, Jonel; Hernandez, Inmaculada; Fernandez, Javier; Casulleras, Mireia; Lopez-Vicario, Cristina; Muldur, Sinan; Hopke, Alex; Vlagea, Alexandru; Aransay, Ana M.; Marchese, Domenica; Bernardi, Mauro; Jalan, Rajiv; Angeli, Paolo; Magri, Giuliana; Cerutti, Andrea; Irimia, Daniel; Heyn, Holger; Arroyo, Vicente; Moreau, Richard Share Save
Integrative single-cell multi-omics of CD19-CARpos and CARneg T cells suggest drivers of immunotherapy response in B cell neoplasias Guerrero-Murillo, Mercedes; Rill-Hinarejos, Aina; Trincado, Juan L.; Bataller, Alex; Ortiz-Maldonado, Valentin; Benitez-Ribas, Daniel; Espanol-Rego, Marta; Gonzalez-Navarro, Eazucena; Martinez-Cibrian, Nuria; Marchese, Domenica; Martin-Martin, Lourdes; Garcia-Sancho, Alejandro Martin; Rives, Susana; Heyn, Holger; Juan, Manel; Urbano-Ispizua, Alvaro; Delgado, Julio; Orfao, Alberto; Mereu, Elisabetta; Bueno, Clara; Menendez, Pablo Share Save
Decoding the muscle transcriptome of patients with late-onset Pompe disease reveals markers of disease progression Monceau, Alexandra; Nath, Rasya Gokul; Suarez-Calvet, Xavier; Musumeci, Olimpia; Toscano, Antonio; Kierdaszuk, Biruta; Kostera-Pruszczyk, Anna; Dominguez-Gonzalez, Cristina; Hernandez-Lain, Aurelio; Paradas, Carmen; Rivas, Eloy; Papadimas, George; Papadopoulos, Constantinos; Chrysanthou-Piterou, Margarita; Gallardo, Eduard; Olive, Montse; Lilleker, James; Roberts, Mark E.; Marchese, Domenica; Lunazzi, Giulia; Heyn, Holger; Fernandez-Simon, Esther; Villalobos, Elisa; Clark, James; Katsikis, Panos; Collins, Catherine; Mehra, Priyanka; Laidler, Zoe; Vincent, Amy; Tasca, Giorgio; Marini-Bettolo, Chiara; Guglieri, Michela; Straub, Volker; Raben, Nina; Diaz-Manera, Jordi Share Save
FixNCut: single-cell genomics through reversible tissue fixation and dissociation Jimenez-Gracia, Laura; Marchese, Domenica; Nieto, Juan C.; Caratu, Ginevra; Melon-Ardanaz, Elisa; Gudino, Victoria; Roth, Sara; Wise, Kellie; Ryan, Natalie K.; Jensen, Kirk B.; Hernando-Momblona, Xavier; Bernardes, Joana P.; Tran, Florian; Sievers, Laura Katharina; Schreiber, Stefan; van den Berge, Maarten; Kole, Tessa; van der Velde, Petra L.; Nawijn, Martijn C.; Rosenstiel, Philip; Batlle, Eduard; Butler, Lisa M.; Parish, Ian A.; Plummer, Jasmine; Gut, Ivo; Salas, Azucena; Heyn, Holger; Martelotto, Luciano G. Share Save
An atlas of cells in the human tonsil Massoni-Badosa, Ramon; Aguilar-Fernandez, Sergio; Nieto, Juan C.; Soler-Vila, Paula; Elosua-Bayes, Marc; Marchese, Domenica; Kulis, Marta; Vilas-Zornoza, Amaia; Buhler, Marco Matteo; Rashmi, Sonal; Alsinet, Clara; Caratu, Ginevra; Moutinho, Catia; Ruiz, Sara; Lorden, Patricia; Lunazzi, Giulia; Colomer, Dolors; Frigola, Gerard; Blevins, Will; Romero-Rivero, Lucia; Jimenez-Martinez, Victor; Vidal, Anna; Mateos-Jaimez, Judith; Maiques-Diaz, Alba; Ovejero, Sara; Moreaux, Jerome; Palomino, Sara; Gomez-Cabrero, David; Agirre, Xabier; Weniger, Marc A.; King, Hamish W.; Garner, Lucy C.; Marini, Federico; Cervera-Paz, Francisco Javier; Baptista, Peter M.; Vilaseca, Isabel; Rosales, Cecilia; Ruiz-Gaspa, Silvia; Talks, Benjamin; Sidhpura, Keval; Pascual-Reguant, Anna; Hauser, Anja E.; Haniffa, Muzlifah; Prosper, Felipe; Kueppers, Ralf; Gut, Ivo Glynne; Campo, Elia; Martin-Subero, Jose Ignacio; Heyn, Holger Share Save
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease (vol 14, 4506, 2023) Garrido-Trigo, Alba; Corraliza, Ana M.; Veny, Marisol; Dotti, Isabella; Melon-Ardanaz, Elisa; Rill, Aina; Crowell, Helena L.; Corbi, Angel; Gudino, Victoria; Esteller, Miriam; Alvarez-Teubel, Iris; Aguilar, Daniel; Masamunt, M. Carme; Killingbeck, Emily; Kim, Youngmi; Leon, Michael; Visvanathan, Sudha; Marchese, Domenica; Caratu, Ginevra; Martin-Cardona, Albert; Esteve, Maria; Ordas, Ingrid; Panes, Julian; Ricart, Elena; Mereu, Elisabetta; Heyn, Holger; Salas, Azucena Share Save
Systematic benchmarking of single-cell ATAC-sequencing protocols De Rop, Florian V.; Hulselmans, Gert; Flerin, Chris; Soler-Vila, Paula; Rafels, Albert; Christiaens, Valerie; Gonzalez-Blas, Carmen Bravo; Marchese, Domenica; Caratu, Ginevra; Poovathingal, Suresh; Rozenblatt-Rosen, Orit; Slyper, Michael; Luo, Wendy; Muus, Christoph; Duarte, Fabiana; Shrestha, Rojesh; Bagdatli, S. Tansu; Corces, M. Ryan; Mamanova, Lira; Knights, Andrew; Meyer, Kerstin B.; Mulqueen, Ryan; Taherinasab, Akram; Maschmeyer, Patrick; Pezoldt, Jörn; Lambert, Camille Lucie Germaine; Iglesias, Marta; Najle, Sebastian R.; Dossani, Zain Y.; Martelotto, Luciano G.; Burkett, Zach; Lebofsky, Ronald; Martin-Subero, Jose Ignacio; Pillai, Satish; Sebe-Pedros, Arnau; Deplancke, Bart; Teichmann, Sarah A.; Ludwig, Leif S.; Braun, Theodore P.; Adey, Andrew C.; Greenleaf, William J.; Buenrostro, Jason D.; Regev, Aviv; Aerts, Stein; Heyn, Holger Share Save
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease Garrido-Trigo, Alba; Corraliza, Ana M.; Veny, Marisol; Dotti, Isabella; Melon-Ardanaz, Elisa; Rill, Aina; Crowell, Helena L.; Corbi, Angel; Gudino, Victoria; Esteller, Miriam; alvarez-Teubel, Iris; Aguilar, Daniel; Masamunt, M. Carme; Killingbeck, Emily; Kim, Youngmi; Leon, Michael; Visvanathan, Sudha; Marchese, Domenica; Caratu, Ginevra; Martin-Cardona, Albert; Esteve, Maria; Panes, Julian; Ricart, Elena; Mereu, Elisabetta; Heyn, Holger; Salas, Azucena Share Save
Detection of early seeding of Richter transformation in chronic lymphocytic leukemia Nadeu, Ferran; Royo, Romina; Massoni-Badosa, Ramon; Garcia-Torre, Beatriz; Duran-Ferrer, Marti; Dawson, Kevin J.; Kulis, Marta; Diaz-Navarro, Ander; Villamor, Neus; Melero, Juan L.; Chapaprieta, Vicente; Dueso-Barroso, Ana; Delgado, Julio; Moia, Riccardo; Ruiz-Gil, Sara; Marchese, Domenica; Verdaguer-Dot, Nuria; Romo, Monica; Rozman, Maria; Frigola, Gerard; Rivas-Delgado, Alfredo; Baumann, Tycho; Alcoceba, Miguel; Gonzalez, Marcos; Climent, Fina; Abrisqueta, Pau; Castellvi, Josep; Bosch, Francesc; Aymerich, Marta; Enjuanes, Anna; Ruiz-Gaspa, Silvia; Lopez-Guillermo, Armando; Jares, Pedro; Bea, Silvia; Colomer, Dolors; Lopez-Bigas, Nuria; LlGelpi, Josep; Torrents, David; Campbell, Peter J.; Gut, Ivo; Garcia-Roves, Pablo M.; Rossi, Davide; Gaidano, Gianluca; Puente, Xose S.; Heyn, Holger; Maura, Francesco; Martin-Subero, Jose, I; Campo, Elias; Playa-Albinyana, Heribert; Giro, Ariadna; Clot, Guillem; Capella-Gutierrez, Salvador; Li Gelp, Josep; Lopez-Bigas, Niiria; Garcia-Roves, Pablo M.; Martin-Subero, Jose, I Share Save
Repression of endogenous retroviruses prevents antiviral immune response and is required for mammary gland development Avgustinova, Alexandra; Laudanna, Carmelo; Pascual-Garcia, Monica; Rovira, Quirze; Djurec, Magdolna; Castellanos, Andres; Urdiroz-Urricelqui, Uxue; Marchese, Domenica; Prats, Neus; Van Keymeulen, Alexandra; Heyn, Holger; Vaquerizas, Juan M.; Benitah, Salvador Aznar Share Save
A single-cell tumor immune atlas for precision oncology Nieto, Paula; Elosua-Bayes, Marc; Trincado, Juan L.; Marchese, Domenica; Massoni-Badosa, Ramon; Salvany, Maria; Henriques, Ana; Nieto, Juan; Aguilar-Fernandez, Sergio; Mereu, Elisabetta; Moutinho, Catia; Ruiz, Sara; Lorden, Patricia; Chin, Vanessa T.; Kaczorowski, Dominik; Chan, Chia-Ling; Gallagher, Richard; Chou, Angela; Planas-Rigol, Ester; Rubio-Perez, Carlota; Gut, Ivo; Piulats, Josep M.; Seoane, Joan; Powell, Joseph E.; Batlle, Eduard; Heyn, Holger Share Save
Immune cell profiling of the cerebrospinal fluid enables the characterization of the brain metastasis microenvironment Rubio-Perez, Carlota; Planas-Rigol, Ester; Trincado, Juan L.; Bonfill-Teixidor, Ester; Arias, Alexandra; Marchese, Domenica; Moutinho, Catia; Serna, Garazi; Pedrosa, Leire; Iurlaro, Raffaella; Martinez-Ricarte, Francisco; Escudero, Laura; Cordero, Esteban; Cicuendez, Marta; Ruiz, Sara; Parra, Genis; Nuciforo, Paolo; Gonzalez, Josep; Pineda, Estela; Sahuquillo, Juan; Tabernero, Josep; Heyn, Holger; Seoane, Joan Share Save
Sampling time-dependent artifacts in single-cell genomics studies Massoni-Badosa, Ramon; Iacono, Giovanni; Moutinho, Catia; Kulis, Marta; Palau, Nuria; Marchese, Domenica; Rodriguez-Ubreva, Javier; Ballestar, Esteban; Rodriguez-Esteban, Gustavo; Marsal, Sara; Aymerich, Marta; Colomer, Dolors; Campo, Elias; Julia, Antonio; Martin-Subero, Jose Ignacio; Heyn, Holger Share Save
Discovering the 3′ UTR-mediated regulation of alpha-synuclein Marchese, Domenica; Botta-Orfila, Teresa; Cirillo, Davide; Antonio Rodriguez, Juan; Maria Livi, Carmen; Fernandez-Santiago, Ruben; Ezquerra, Mario; Marti, Maria J.; Bechara, Elias; Gaetano Tartaglia, Gian Share Save
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