arrow
Back
L

Lee Cooper

northwestern university

51H-index
256Paper Count
1.7WCitation Count
Published Papers 70
Publication Date
An evidence-based workflow for integrating molecular testing with histopathology in the workup of meningiomas
err2026-10-01
err0
errOAAI
errHarrshavasan Congivaram; Vineeth Thirunavu; Lucas Santana-Santos; Pouya Jamshidi; Jared T Arendhsen; Rudolph J Castellani; Daniel J Brat; Lee A D Cooper; Marina A Ayad; William C Chen; Khizar R Nandoliya; Rahul K Chaliparambil; Rishi Jain; Mateo Gomez; Drew Duckett; The Malnati Brain Tumor Consortium; Madina Sukhanova; Heather Smith; Matthew McCord; Alicia Steffens; Jordain Walshon; Kathleen McCortney; Wenxia Wang; Xinyan Lu; Amy B Heimberger; David R Raleigh; Stephen T Magill; Mark W Youngblood; Craig M Horbinski
errShare
errSave
Machine learning identification of maternal inflammatory response and systemic inflammatory response from placental membrane whole slide images
err2026-06-24
err0
PREAI
errSharma, Abhishek; Nateghi, Ramin; Ayad, Marina; Cooper, Lee A. D.; Goldstein, Jeffery A.
errShare
errSave
BraTS-Pathology 2024: Insights and Future Directions Informed by the AI-RANO & RANO-RGP Effort to Assess Glioblastoma Heterogeneity
err2025-11-01
err0
errOAAI
errThakur, Siddhesh; Malec, Sylwia; Pitarc, Carla; Linardos, Akis; Innani, Shubham; Adap, Sanyukta; Faghani, Shahriar; Moassefi, Mana; Nasrallah, Maclean; Ahrendsen, Jared; Barresi, Valeria; Gubbiotti, Maria; Lopez, Giselle; Lucas, Calixto-Hope G.; Chung, Verena; Karargyris, Alexandros; Kassem, Hasan; Miller, Michael; Pati, Sarthak; Baheti, Bhakti; Wodzinski, Marek; Muller, Henning; Zhang, Juexin; Weng, Ying; Chen, Ke; Kumar, Rithik; Vinit, Vinit; Arora, Madhav; Dhingra, Twinkle; Zahra, Syed Rameem; Gupta, Ankur; Sandino, Alvaro; Tiwari, Pallawi; Cooper, Lee; Huse, Jason; Bell, Robert; Bakas, Spyridon
errShare
errSave
AI-driven screening of equivocal prostate IHC cases: development and validation of a screening and cancer detection framework
err2025-10-01
err0
errOAAI
errRamin Nateghi; Ruoji Zhou; Madeline Saft; Marina Schnauss; Clayton Neill; Ridwan Alam; Nicole Handa; Mitchell Huang; Eric V. Li; Jeffery A. Goldstein; Hiten D. Patel; Edward M. Schaeffer; Menatalla Nadim; Fattaneh Pourakpour; Bogdan Isaila; Christopher Felicelli; Vikas Mehta; Behtash G. Nezami; Ashley E. Ross; Ximing J. Yang; Lee A.D. Cooper
errShare
errSave
Landscape of subclinical rejection in a large international cohort of pediatric kidney transplant (kTx) recipients
err2025-08-23
err0
PREAI
errJulien Hogan; Rouba Garro; Charlotte Duneton; Gillian Divard; Olivia Boyer; Marion Rabant; Jody Smith; Katherine Twombley; Brad Warady; Patricia Weng; Rima Zahr; Rachel Patzer; Lee Alex Donald Cooper; David Gutman; Alexandre Loupy; Alton Brad Farris
errShare
errSave
Deep learning for fetal inflammatory response diagnosis in the umbilical cord
err2025-06-01
err0
errOAAI
errAyad, Marina A.; Nateghi, Ramin; Sharma, Abhishek; Chillrud, Lawrence; Seesillapachai, Tilly; Chou, Teresa; Cooper, Lee A. D.; Goldstein, Jeffery A.
errShare
errSave
BRATS-PATH: ASSESSING HETEROGENEOUS HISTOPATHOLOGIC REGIONS IN GLIOBLASTOMA
err2024-11-11
err0
PREAI
errThakur, Siddhesh; Faghani, Shahriar; Moassefi, Mana; Baid, Ujjwal; Chung, Verena; Pati, Sarthak; Innani, Shubham; Baheti, Bhakti; Albrecht, Jacob; Karargyris, Alexandros; Kassem, Hasan; Nasrallah, Maclean; Ahrendsen, Jared; Barresi, Valeria; Gubbiotti, Maria; Lopez, Giselle; Lucas, Calixto-Hope; Miller, Michael; Cooper, Lee; Huse, Jason; Bell, William; Bakas, Spyridon
errShare
errSave
Focused active learning for histopathological image classification *
err2024-07-01
err1
errOAAI
errSchmidt, Arne; Morales-Alvarez, Pablo; Cooper, Lee A. D.; Newberg, Lee A.; Enquobahrie, Andinet; Molina, Rafael; Katsaggelos, Aggelos K.
errShare
errSave
A panoptic segmentation dataset and deep-learning approach for explainable scoring of tumor-infiltrating lymphocytes
err2024-06-28
err1
errOAAI
errLiu, Shangke; Amgad, Mohamed; More, Deeptej; Rathore, Muhammad A.; Salgado, Roberto; Cooper, Lee A. D.
errShare
errSave
Tissue Contamination Challenges the Credibility of Machine Learning Models in Real World Digital Pathology
err2024-03-01
err3
errOAAI
errIrmakci, Ismail; Nateghi, Ramin; Zhou, Rujoi; Vescovo, Mariavittoria; Saft, Madeline; Ross, Ashley E.; Yang, Ximing J.; Cooper, Lee A. D.; Goldstein, Jeffery A.
errShare
errSave
Learning from crowds for automated histopathological image segmentation
err2024-03-01
err0
errOAAI
errLopez-Perez, Miguel; Morales-Alvarez, Pablo; Cooper, Lee A. D.; Felicelli, Christopher; Goldstein, Jeffery; Vadasz, Brian; Molina, Rafael; Katsaggelos, Aggelos K.
errShare
errSave
Image-based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno-oncology Biomarker Working Group on Breast Cancer
err2024-01-17
err3
errOAAI
errJahangir, Chowdhury Arif; Page, David B.; Broeckx, Glenn; Gonzalez, Claudia A.; Burke, Caoimbhe; Murphy, Clodagh; Reis-Filho, Jorge S.; Ly, Amy; Harms, Paul W.; Gupta, Rajarsi R.; Vieth, Michael; Hida, Akira, I; Kahila, Mohamed; Kos, Zuzana; van Diest, Paul J.; Verbandt, Sara; Thagaard, Jeppe; Khiroya, Reena; Abduljabbar, Khalid; Haab, Gabriela Acosta; Acs, Balazs; Adams, Sylvia; Almeida, Jonas S.; Alvarado-Cabrero, Isabel; Azmoudeh-Ardalan, Farid; Badve, Sunil; Baharun, Nurkhairul Bariyah; Bellolio, Enrique R.; Bheemaraju, Vydehi; Blenman, Kim R. M.; Fujimoto, Luciana Botinelly Mendonca; Burgues, Octavio; Chardas, Alexandros; Cheang, Maggie Chon U.; Ciompi, Francesco; Cooper, Lee A. D.; Coosemans, An; Corredor, German; Portela, Flavio Luis Dantas; Deman, Frederik; Demaria, Sandra; Dudgeon, Sarah N.; Elghazawy, Mahmoud; Fernandez-Martin, Claudio; Fineberg, Susan; Fox, Stephen B.; Giltnane, Jennifer M.; Gnjatic, Sacha; Gonzalez-Ericsson, Paula, I; Grigoriadis, Anita; Halama, Niels; Hanna, Matthew G.; Harbhajanka, Aparna; Hart, Steven N.; Hartman, Johan; Hewitt, Stephen; Horlings, Hugo M.; Husain, Zaheed; Irshad, Sheeba; Janssen, Emiel A. M.; Kataoka, Tatsuki R.; Kawaguchi, Kosuke; Khramtsov, Andrey, I; Kiraz, Umay; Kirtani, Pawan; Kodach, Liudmila L.; Korski, Konstanty; Akturk, Guray; Scott, Ely; Kovacs, Aniko; Laenkholm, Anne-Vibeke; Lang-Schwarz, Corinna; Larsimont, Denis; Lennerz, Jochen K.; Lerousseau, Marvin; Li, Xiaoxian; Madabhushi, Anant; Maley, Sai K.; Narasimhamurthy, Vidya Manur; Marks, Douglas K.; McDonald, Elizabeth S.; Mehrotra, Ravi; Michiels, Stefan; Kharidehal, Durga; Minhas, Fayyaz ul Amir Afsar; Mittal, Shachi; Moore, David A.; Mushtaq, Shamim; Nighat, Hussain; Papathomas, Thomas; Penault-Llorca, Frederique; Perera, Rashindrie D.; Pinard, Christopher J.; Pinto-Cardenas, Juan Carlos; Pruneri, Giancarlo; Pusztai, Lajos; Rajpoot, Nasir Mahmood; Rapoport, Bernardo Leon; Rau, Tilman T.; Ribeiro, Joana M.; Rimm, David; Vincent-Salomon, Anne; Saltz, Joel; Sayed, Shahin; Hytopoulos, Evangelos; Mahon, Sarah; Siziopikou, Kalliopi P.; Sotiriou, Christos; Stenzinger, Albrecht; Sughayer, Maher A.; Sur, Daniel; Symmans, Fraser; Tanaka, Sunao; Taxter, Timothy; Tejpar, Sabine; Teuwen, Jonas; Thompson, E. Aubrey; Tramm, Trine; Tran, William T.; van Der Laak, Jeroen; Verghese, Gregory E.; Viale, Giuseppe; Wahab, Noorul; Walter, Thomas; Waumans, Yannick; Wen, Hannah Y.; Yang, Wentao; Yuan, Yinyin; Bartlett, John; Loibl, Sibylle; Denkert, Carsten; Savas, Peter; Loi, Sherene; Stovgaard, Elisabeth Specht; Salgado, Roberto; Gallagher, William M.; Rahman, Arman
errShare
errSave
Automated Deep Learning-Based Diagnosis and Molecular Characterization of Acute Myeloid Leukemia Using Flow Cytometry
err2024-01-01
err5
errOAAI
errLewis, Joshua E.; Cooper, Lee A. D.; Jaye, David L.; Pozdnyakova, Olga
errShare
errSave
A population-level digital histologic biomarker for enhanced prognosis of invasive breast cancer
err2023-11-27
err20
errOAAI
errAmgad, Mohamed; Hodge, James M.; Elsebaie, Maha A. T.; Bodelon, Clara; Puvanesarajah, Samantha; Gutman, David A.; Siziopikou, Kalliopi P.; Goldstein, Jeffery A.; Gaudet, Mia M.; Teras, Lauren R.; Cooper, Lee A. D.
errShare
errSave
Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: a report of the international immuno-oncology biomarker working group
err2023-08-23
err12
errOAAI
errThagaard, Jeppe; Broeckx, Glenn; Page, David B.; Jahangir, Chowdhury Arif; Verbandt, Sara; Kos, Zuzana; Gupta, Rajarsi; Khiroya, Reena; Abduljabbar, Khalid; Acosta Haab, Gabriela; Acs, Balazs; Akturk, Guray; Almeida, Jonas S.; Alvarado-Cabrero, Isabel; Amgad, Mohamed; Azmoudeh-Ardalan, Farid; Badve, Sunil; Baharun, Nurkhairul Bariyah; Balslev, Eva; Bellolio, Enrique R.; Bheemaraju, Vydehi; Blenman, Kim R. M.; Botinelly Mendonca Fujimoto, Luciana; Bouchmaa, Najat; Burgues, Octavio; Chardas, Alexandros; Cheang, Maggie U.; Ciompi, Francesco; Cooper, Lee A. D.; Coosemans, An; Corredor, German; Dahl, Anders B.; Dantas Portela, Flavio Luis; Deman, Frederik; Demaria, Sandra; Dore Hansen, Johan; Dudgeon, Sarah N.; Ebstrup, Thomas; Elghazawy, Mahmoud; Fernandez-Martin, Claudio; Fox, Stephen B.; Gallagher, William M.; Giltnane, Jennifer M.; Gnjatic, Sacha; Gonzalez-Ericsson, Paula, I; Grigoriadis, Anita; Halama, Niels; Hanna, Matthew G.; Harbhajanka, Aparna; Hart, Steven N.; Hartman, Johan; Hauberg, Soren; Hewitt, Stephen; Hida, Akira, I; Horlings, Hugo M.; Husain, Zaheed; Hytopoulos, Evangelos; Irshad, Sheeba; Janssen, Emiel A. M.; Kahila, Mohamed; Kataoka, Tatsuki R.; Kawaguchi, Kosuke; Kharidehal, Durga; Khramtsov, Andrey, I; Kiraz, Umay; Kirtani, Pawan; Kodach, Liudmila L.; Korski, Konstanty; Kovacs, Aniko; Laenkholm, Anne-Vibeke; Lang-Schwarz, Corinna; Larsimont, Denis; Lennerz, Jochen K.; Lerousseau, Marvin; Li, Xiaoxian; Ly, Amy; Madabhushi, Anant; Maley, Sai K.; Manur Narasimhamurthy, Vidya; Marks, Douglas K.; McDonald, Elizabeth S.; Mehrotra, Ravi; Michiels, Stefan; Minhas, Fayyaz ul Amir Afsar; Mittal, Shachi; Moore, David A.; Mushtaq, Shamim; Nighat, Hussain; Papathomas, Thomas; Penault-Llorca, Frederique; Perera, Rashindrie D.; Pinard, Christopher J.; Pinto-Cardenas, Juan Carlos; Pruneri, Giancarlo; Pusztai, Lajos; Rahman, Arman; Rajpoot, Nasir Mahmood; Rapoport, Bernardo Leon; Rau, Tilman T.; Reis-Filho, Jorge S.; Ribeiro, Joana M.; Rimm, David; Roslind, Anne; Vincent-Salomon, Anne; Salto-Tellez, Manuel; Saltz, Joel; Sayed, Shahin; Scott, Ely; Siziopikou, Kalliopi P.; Sotiriou, Christos; Stenzinger, Albrecht; Sughayer, Maher A.; Sur, Daniel; Fineberg, Susan; Symmans, Fraser; Tanaka, Sunao; Taxter, Timothy; Tejpar, Sabine; Teuwen, Jonas; Thompson, E. Aubrey; Tramm, Trine; Tran, William T.; van Der Laak, Jeroen; van Diest, Paul J.; Verghese, Gregory E.; Viale, Giuseppe; Vieth, Michael; Wahab, Noorul; Walter, Thomas; Waumans, Yannick; Wen, Hannah Y.; Yang, Wentao; Yuan, Yinyin; Zin, Reena Md; Adams, Sylvia; Bartlett, John; Loibl, Sibylle; Denkert, Carsten; Savas, Peter; Loi, Sherene; Salgado, Roberto; Specht Stovgaard, Elisabeth
errShare
errSave
A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization
err2023-08-01
err18
errOAAI
errRong, Ruichen; Sheng, Hudanyun; Jin, Kevin W.; Wu, Fangjiang; Luo, Danni; Wen, Zhuoyu; Tang, Chen; Yang, Donghan M.; Jia, Liwei; Amgad, Mohamed; Cooper, Lee A. D.; Xie, Yang; Zhan, Xiaowei; Wang, Shidan; Xiao, Guanghua
errShare
errSave
Machine learning classification of placental villous infarction, perivillous fibrin deposition, and intervillous thrombus
err2023-04-01
err5
errOAAI
errGoldstein, Jeffery A.; Nateghi, Ramin; Irmakci, Ismail; Cooper, Lee A. D.
errShare
errSave
An Automated Pipeline for Differential Cell Counts on Whole-Slide Bone Marrow Aspirate Smears
err2023-02-01
err6
errOAAI
errLewis, Joshua E.; Shebelut, Conrad W.; Drumheller, Bradley R.; Zhang, Xuebao; Shanmugam, Nithya; Attieh, Michel; Horwath, Michael C.; Khanna, Anurag; Smith, Geoffrey H.; Gutman, David A.; Aljudi, Ahmed; Cooper, Lee A. D.; Jaye, David L.
errShare
errSave
Deep Gaussian Processes for Classification With Multiple Noisy Annotators. Application to Breast Cancer Tissue Classification
err2023-01-01
err11
errOAAI
errLopez-Perez, Miguel; Morales-Alvarez, Pablo; Cooper, Lee A. D.; Molina, Rafael; Katsaggelos, Aggelos K.
errShare
errSave
NuCLS: A scalable crowdsourcing approach and dataset for nucleus classification and segmentation in breast cancer
err2022-05-17
err0
errOAAI
errAmgad, Mohamed; Atteya, Lamees A.; Hussein, Hagar; Mohammed, Kareem Hosny; Hafiz, Ehab; Elsebaie, Maha A. T.; Alhusseiny, Ahmed M.; AlMoslemany, Mohamed Atef; Elmatboly, Abdelmagid M.; Pappalardo, Philip A.; Sakr, Rokia Adel; Mobadersany, Pooya; Rachid, Ahmad; Saad, Anas M.; Alkashash, Ahmad M.; Ruhban, Inas A.; Alrefai, Anas; Elgazar, Nada M.; Abdulkarim, Ali; Farag, Abo-Alela; Etman, Amira; Elsaeed, Ahmed G.; Alagha, Yahya; Amer, Yomna A.; Raslan, Ahmed M.; Nadim, Menatalla K.; Elsebaie, Mai A. T.; Ayad, Ahmed; Hanna, Liza E.; Gadallah, Ahmed; Elkady, Mohamed; Drumheller, Bradley; Jaye, David; Manthey, David; Gutman, David A.; Elfandy, Habiba; Cooper, Lee A. D.
errShare
errSave