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Ludmil B. Alexandrov

university of california san diego

96H-index
477Paper Count
6.5WCitation Count
Published Papers 151
Publication Date
Biological aging and the hidden architecture of early-onset cancer risk
err2026-08-18
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PREAI
errAmmal Abbasi; Ludmil B. Alexandrov
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Identification and validation of a previously missed mutational signature in colorectal cancer
err2026-08-12
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errOAAI
errMariya Kazachkova; Burçak Otlu; Marcos Díaz-Gay; Ammal Abbasi; Sarah Moody; Zichen Jiang; Sandra Perdomo; David. C. Wedge; Paul Brennan; Michael. R. Stratton; Ludmil. B. Alexandrov
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Author Correction: Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
errNature
IF48.5
err2026-08-11
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PREAI
errTongwu Zhang; Wei Zhao; Christopher Wirth; Marcos Díaz-Gay; Jinhu Yin; Monia Cecati; Francesca Marchegiani; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Jian Sang; John P. McElderry; Michelle Antony; Alyssa Klein; Azhar Khandekar; Caleb Hartman; Jennifer Rosenbaum; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Neil E. Caporaso; Maria Pik Wong; Kin Chung Leung; Chao Agnes Hsiung; Chih-Yi Chen; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Milan Savic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Lixing Yang; Bin Zhu; Jianxin Shi; Kevin Brown; Nathaniel Rothman; Stephen J. Chanock; Ludmil B. Alexandrov; Jiyeon Choi; Maurizio Cardelli; Qing Lan; Martin A. Nowak; David C. Wedge; Maria Teresa Landi
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Prior therapy defines mutation profiles in childhood cancer at relapse
errNature
IF48.5
err2026-07-22
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errOAAI
errMehdi Layeghifard; Marcos Díaz-Gay; Erik N. Bergstrom; Mathepan J. Mahendralingam; Nicholas Light; Sasha Blay; Joshua O. Nash; Nathaniel D. Anderson; Jessica N. Au; Scott Davidson; Pedro L. Ballester; Timmy Wen; Syed Kashif Daud; Lisa-Monique Edward; S. M. Ashiqul Islam; Azhar Khandekar; Burçak Otlu; Ledia Brunga; Rawan Hammad; Shimaa Nassif; Nirav H. Thacker; Tara Feltham; Noemi A. Fuentes-Bolanos; Marie Wong-Erasmus; Max F. Levine; Katherine E. Miller; Neerav N. Shukla; Michael D. Kinnaman; Dominik Glodzik; Carol Portwine; Sabrina Millson; Alexandra P. Zorzi; Mariam Mikhail; Conrad V. Fernandez; Laura Wheaton; Gunes Gundem; Andrew L. Kung; Uri Tabori; Chelsea Mayoh; Elli Papaemmanuil; Mark J. Cowley; David Malkin; Anita Villani; Ludmil B. Alexandrov; Adam Shlien
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DREAM repressive activity links somatic mutation, lifespan and disease
err2026-06-02
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PREAI
errZane Koch; Shuvro P. Nandi; Kate Licon; Arturo Bujarrabal-Dueso; David H. Meyer; Safa Saeed; Pirunthan Perampalam; Frederick A. Dick; Björn Schumacher; Ludmil B. Alexandrov; Trey Ideker
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Ancestry and somatic profile indicate acral melanoma origin and prognosis
errNature
IF48.5
err2026-02-18
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errOAAI
errPatricia Basurto-Lozada; Martha Estefania Vázquez-Cruz; Christian Molina-Aguilar; Amanda Jiang; Dekker C. Deacon; Dennis Cerrato-Izaguirre; Irving Simonin-Wilmer; Fernanda G. Arriaga-González; Kenya L. Contreras-Ramírez; Emiliano Ferro-Rodríguez; Jamie Billington; Eric T. Dawson; J. Rene C. Wong-Ramirez; Johana Itzel Ramos-Galguera; Alethia Álvarez-Cano; Dorian Y. García-Ortega; O. Isaac García-Salinas; Alfredo Hidalgo-Miranda; Mireya Cisneros-Villanueva; Peter A. Johansson; Héctor Martínez-Said; Pilar Gallego-García; Mark J. Arends; Ingrid Ferreira; Mark Tullett; Rebeca Olvera-León; Louise van der Weyden; Martín del Castillo Velasco-Herrera; Rodrigo Roldán-Marín; Helena Vidaurri de la Cruz; Luis Alberto Tavares-de-la-Paz; Diego Hinojosa-Ugarte; Rachel L. Belote; D. Timothy Bishop; Marcos Díaz-Gay; Ludmil B. Alexandrov; Yesennia Sánchez-Pérez; Gino K. In; Richard M. White; Patrícia A. Possik; Robert L. Judson-Torres; David J. Adams; Carla Daniela Robles-Espinoza
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Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types
err2026-02-13
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errOAAI
errAndrew Everall; Avraam Tapinos; Aliah Hawari; Alex J. Cornish; Amit Sud; Daniel Chubb; Ben Kinnersley; Anna Frangou; Miguel Barquin; Josephine Jung; David N. Church; Ludmil B. Alexandrov; Richard S. Houlston; Andreas J. Gruber; David C. Wedge
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CarD-T: an automated pipeline for the nomination and analysis of potential human carcinogens
err2026-01-01
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errOAAI
errO'Neill, Jamey; Reddy, Gudur Ashrith; Dhillon, Nermeeta; Tripathi, Osika; Alexandrov, Ludmil; Katira, Parag
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Microbiome analysis of 940 lung cancers in never-smokers reveals lack of clinically relevant associations
err2025-12-12
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errOAAI
errJohn P. McElderry; Tongwu Zhang; Wei Zhao; Phuc H. Hoang; Samuel Anyaso-Samuel; Jian Sang; Azhar Khandekar; Caleb Hartman; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia Lee; Sunandini Sharma; Kristine M. Jones; Bin Zhu; Marcos Díaz-Gay; Luis Mas; Oscar Gerardo Arrieta Rodriguez; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Vladimir Janout; Dana Mates; Simona Ognjanovic; Milan Savic; Milica Kontic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Maria Pik Wong; Kin Chung Leung; Chih-Yi Chen; Chao Agnes Hsiung; Nathaniel Rothman; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Robert Homer; Soo-Ryum Yang; Qing Lan; Martin A. Nowak; David C. Wedge; Ludmil B. Alexandrov; Stephen J. Chanock; Emily Vogtmann; Christian C. Abnet; Jianxin Shi; Maria Teresa Landi
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Chromothripsis and ecDNA initiated by N4BP2 nuclease fragmentation of cytoplasm-exposed chromosomes
errScience
IF45.8
err2025-12-11
err0
PREAI
errKsenia Krupina; Alexander Goginashvili; Michael W. Baughn; Stephen Moore; Christopher D. Steele; Amy T. Nguyen; Daniel L. Zhang; Jonas Koeppel; Prasad Trivedi; Aarti Malhotra; David Jenkins; Andrew K. Shiau; Yohei Miyake; Tomoyuki Koga; Shunichiro Miki; Frank B. Furnari; Peter J. Campbell; Ludmil B. Alexandrov; Don W. Cleveland
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Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
errNature
IF48.5
err2025-12-10
err0
PREAI
errTongwu Zhang; Wei Zhao; Christopher Wirth; Marcos Díaz-Gay; Jinhu Yin; Monia Cecati; Francesca Marchegiani; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Jian Sang; John P. McElderry; Michelle Antony; Alyssa Klein; Azhar Khandekar; Caleb Hartman; Jennifer Rosenbaum; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Neil E. Caporaso; Maria Pik Wong; Kin Chung Leung; Chao Agnes Hsiung; Chih-Yi Chen; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Milan Savic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Lixing Yang; Bin Zhu; Jianxin Shi; Kevin Brown; Nathaniel Rothman; Stephen J. Chanock; Ludmil B. Alexandrov; Jiyeon Choi; Maurizio Cardelli; Qing Lan; Martin A. Nowak; David C. Wedge; Maria Teresa Landi
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Space-associated stem cell hallmarks of aging and resilience in astronauts
err2025-11-24
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errOAAI
errJessica Pham; Shuvro P. Nandi; Larisa Balaian; Claire Engstrom; Patrick Chang; Karla Mack; Inge van der Werf; Emma Klacking; Jenna Sneifer; Neha Katragadda; Kendale Wirtjes; Antonio Ruiz; Daisy Chilin-Fuentes; Elsa Molina; Pinar Mesci; Jana Stoudemire; Sheldon R. Morris; Thomas Whisenant; Ludmil B. Alexandrov; Catriona H.M. Jamieson
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Nanobioreactor detection of space-associated hematopoietic stem and progenitor cell aging
err2025-09-04
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errOAAI
errJessica Pham; Jane Isquith; Larisa Balaian; Shuvro P. Nandi; Claire Engstrom; Karla Mack; Inge van der Werf; Patrick Chang; Jana Stoudemire; Luisa Ladel; Emma Klacking; Antonio Ruiz; Daisy Chilin-Fuentes; Jenna Sneifer; David Mays; Paul Gamble; Shelby Giza; Jiya Janowitz; Trevor Nienaber; Tejaswini Mishra; Anna A. Khachatrian; Elsa Molina; Michael P. Snyder; Sheldon R. Morris; Twyman Clements; Alysson R. Muotri; Thomas Whisenant; Ludmil B. Alexandrov; Catriona H.M. Jamieson
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Clinical syndromes linked to biallelic germline variants in MCM8 and MCM9
err2025-07-18
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errOAAI
errNoah C. Helderman; Ting Yang; Claire Palles; Diantha Terlouw; Hailiang Mei; Ruben H.P. Vorderman; Davy Cats; Marcos Díaz-Gay; Marjolijn C.J. Jongmans; Ashwin Ramdien; Irma van de Beek; Thomas F. Eleveld; Andrew Green; Frederik J. Hes; Marry M. van den Heuvel-Eibrink; Annelore Van Der Kelen; Sabine Kliesch; Roland P. Kuiper; Inge M.M. Lakeman; Lisa E.E.L.O. Lashley; Leendert H.J. Looijenga; Manon S. Oud; Johanna Steingröver; Yardena Tenenbaum-Rakover; Carli M. Tops; Frank Tüttelmann; Richarda M. de Voer; Dineke Westra; Margot J. Wyrwoll; Mariano Golubicki; Marina Antelo; Laia Bonjoch; Mariona Terradas; Laura Valle; Ludmil B. Alexandrov; Hans Morreau; Tom van Wezel; Sergi Castellví-Bel; Yael Goldberg; Maartje Nielsen
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The mutagenic forces shaping the genomes of lung cancer in never smokers
errNature
IF48.5
err2025-07-02
err0
PREAI
errMarcos Díaz-Gay; Tongwu Zhang; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Azhar Khandekar; Wei Zhao; Christopher D. Steele; Burçak Otlu; Shuvro P. Nandi; Raviteja Vangara; Erik N. Bergstrom; Mariya Kazachkova; Oriol Pich; Charles Swanton; Chao Agnes Hsiung; I-Shou Chang; Maria Pik Wong; Kin Chung Leung; Jian Sang; John P. McElderry; Caleb Hartman; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Pilar Gallego-García; Yang Yang; Xiaoming Zhong; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Millica Kontic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Lixing Yang; Martin A. Nowak; Jianxin Shi; Nathaniel Rothman; David C. Wedge; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Qing Lan; Bin Zhu; Stephen J. Chanock; Jiyeon Choi; Ludmil B. Alexandrov; Maria Teresa Landi
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Self-amplifying NRF2–EZH2 epigenetic loop converts KRAS-initiated progenitors to invasive pancreatic cancer
err2025-06-30
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PREAI
errLaura Antonucci; Na Li; Angeles Duran; Isidoro Cobo; Chiara Nicoletti; Kosuke Watari; Shuvro Prokash Nandi; Feng Zhu; Yongmei Zhao; Irene Riahi; Motoyuki Tsuda; Vidhi M. Shah; Terry Morgan; Trent Waugh; Luca Caputo; Yuan Liu; Alexandra Rundberg Nilsson; Hongxu Xian; Jelena Todoric; Li Gu; Elsa Sanchez-Lopez; Guido Eibl; Emily A. Vucic; Michal Krawczyk; Qianlan Xu; Andrew M. Lowy; Georgia Hatzivassiliou; Merone Roose-Girma; Dorota Skowronska-Krawczyk; David A. Scott; Dafna Bar-Sagi; Pablo Tamayo; Ying Wu; Rosalie C. Sears; Christopher K. Glass; Ludmil B. Alexandrov; Pier Lorenzo Puri; David W. Dawson; Yinling Hu; Maria T. Diaz-Meco; Jorge Moscat; Michael Karin
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APOBEC affects tumor evolution and age at onset of lung cancer in smokers
err2025-05-21
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errOAAI
errZhang, Tongwu; Sang, Jian; Hoang, Phuc H.; Zhao, Wei; Rosenbaum, Jennifer; Johnson, Kofi Ennu; Klimczak, Leszek J.; McElderry, John; Klein, Alyssa; Wirth, Christopher; Bergstrom, Erik N.; Diaz-Gay, Marcos; Vangara, Raviteja; Colon-Matos, Frank; Hutchinson, Amy; Lawrence, Scott M.; Cole, Nathan; Zhu, Bin; Przytycka, Teresa M.; Shi, Jianxin; Caporaso, Neil E.; Homer, Robert; Pesatori, Angela C.; Consonni, Dario; Imielinski, Marcin; Chanock, Stephen J.; Wedge, David C.; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Harris, Reuben S.; Landi, Maria Teresa
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Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception
err2025-05-08
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errOAAI
errBo Zhu; Pingjun Chen; Muhammad Aminu; Jian-Rong Li; Junya Fujimoto; Yanhua Tian; Lingzhi Hong; Hong Chen; Xin Hu; Chenyang Li; Natalie Vokes; Andre L. Moreira; Don L. Gibbons; Luisa M. Solis Soto; Edwin Roger Parra Cuentas; Ou Shi; Songhui Diao; Jie Ye; Frank R. Rojas; Eduardo Vilar; Anirban Maitra; Ken Chen; Nicolas Navin; Monique Nilsson; Beibei Huang; Simon Heeke; Jianhua Zhang; Cara L. Haymaker; Vamsidhar Velcheti; Daniel H. Sterman; Veena Kochat; William I. Padron; Ludmil B. Alexandrov; Zhubo Wei; Xiuning Le; Linghua Wang; Junya Fukuoka; J. Jack Lee; Ignacio I. Wistuba; Harvey I. Pass; Mark Davis; Samir Hanash; Chao Cheng; Steven Dubinett; Avrum Spira; Kunal Rai; Scott M. Lippman; P. Andrew Futreal; John V. Heymach; Alexandre Reuben; Jia Wu; Jianjun Zhang
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The complexity of tobacco smoke-induced mutagenesis in head and neck cancer
err2025-03-31
err1
errOAAI
errTorrens, Laura; Moody, Sarah; de Carvalho, Ana Carolina; Kazachkova, Mariya; Abedi-Ardekani, Behnoush; Cheema, Saamin; Senkin, Sergey; Cattiaux, Thomas; Penha, Ricardo Cortez Cardoso; Atkins, Joshua R.; Gaborieau, Valerie; Chopard, Priscilia; Carreira, Christine; Abbasi, Ammal; Bergstrom, Erik N.; Vangara, Raviteja; Wang, Jingwei; Fitzgerald, Stephen; Latimer, Calli; Diaz-Gay, Marcos; Jones, David; Teague, Jon; Pinto, Felipe Ribeiro; Kowalski, Luiz Paulo; Polesel, Jerry; Giudici, Fabiola; de Oliveira, Jose Carlos; Lagiou, Pagona; Lagiou, Areti; Vilensky, Marta; Mates, Dana; Mates, Ioan N.; Arantes, Lidia M.; Reis, Rui; Podesta, Jose Roberto V.; von Zeidler, Sandra V.; Holcatova, Ivana; Curado, Maria Paula; Canova, Cristina; Fabianova, Elenora; Rodriguez-Urrego, Paula A.; Humphreys, Laura; Alexandrov, Ludmil B.; Brennan, Paul; Stratton, Michael R.; Perdomo, Sandra
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Exploring Atypical Evolution of Clear Cell Renal Cell Carcinoma Without 3p Loss of Heterozygosity
err2025-03-01
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PREAI
errAbedi-Ardekani, Behnoush; Cattiaux, Thomas; Moody, Sarah; Senkin, Sergey; Shibata, Tatsuhiro; Alexandrov, Ludmil; Stratton, Michael; Brennan, Paul
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