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Leming Shi

fudan university

60H-index
294Paper Count
2.3WCitation Count
Published Papers 89
Publication Date
Benchmarking RNA-seq with the Quartet and MAQC reference materials to establish best practices for accurate alternative splicing analysis
err2026-08-08
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errDuo Wang; Jiaxin Zhao; Qingwang Chen; Yanxi Han; Yaqing Liu; Yuanfeng Zhang; Cong Liu; Wanwan Hou; Ying Yu; Leming Shi; Yuanting Zheng; Jinming Li; Rui Zhang
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A metrological foundation for absolute transcriptomics using International System of Units-anchored calibrators
err2026-03-26
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errYu Zhang; Bingwen Yang; Ying Yu; Xia Wang; Chunyan Niu; Yongzhuo Zhang; Yang Liu; Jingshu Li; Caihang Zhang; Jiayi Yang; Jiayu Tian; Zheng Liu; Zhiyu Tang; Yunhua Gao; Yuanting Zheng; Yuqin Liu; Ting Xiao; Rui Zhang; Xiang Fang; Leming Shi; Lianhua Dong
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The Influence of Sleep and Diet on Human Peripheral Immunity and Chronic Health Conditions
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IF10.7
err2026-02-19
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errYiran Zhao; Wenran Li; Bingjie Li; Siyu Zhou; Xianlei Zhao; Qi Wang; Yingyu Cheng; Yali Luo; Jingxuan Han; Xuling Han; Helian Li; Jian Gao; Jialin Zhao; Zhonghan Sun; Mengmeng Kong; Xiaofeng Zhou; Ying Yu; Wanwan Hou; Qinsheng Chen; Jingxian Zhang; Xiaofeng Wang; Jingchun Luo; Li Jin; Leming Shi; Yan Zheng; ; ; Huiru Tang; Sijia Wang; Feng Qian
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Integrative clinico-molecular analysis reveals actionable subtypes and biomarkers in lung adenocarcinoma
err2026-01-28
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errJun Shang; He Jiang; Yueren Yan; Yue Zhao; Jingcheng Yang; Han Han; Hui Yuan; Leming Shi; Yuanting Zheng; Haiquan Chen
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Genomic and transcriptomic dynamics in the stepwise progression of lung adenocarcinoma
err2025-12-04
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errFangqiu Fu; Jun Shang; Yueren Yan; He Jiang; Han Han; Hui Yuan; Zhendong Gao; Jingcheng Yang; Jian Gao; Jun Wang; Yunjian Pan; Yicong Lin; Ting Ye; Yiliang Zhang; Yawei Zhang; Jiaqing Xiang; Hong Hu; Zhiwei Cao; Yuanting Zheng; Yuan Li; Yang Zhang; Li Jin; Leming Shi; Haiquan Chen
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The landscape of innovative oncology drug targets
err2025-12-04
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PREAI
errGui Yao; Leming Shi; Yuanting Zheng
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Protein-level batch-effect correction enhances robustness in MS-based proteomics
err2025-11-04
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errQiaochu Chen; Zehui Cao; Yaqing Liu; Naixin Zhang; Yanming Xie; Haonan Chen; Yuanbang Mai; Shumeng Duan; Jiaqi Li; Ying Yu; Yang Zhao; Leming Shi; Yuanting Zheng
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Methylation reference datasets from quartet DNA materials for benchmarking epigenome sequencing
err2025-10-16
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errXiaorou Guo; Qingwang Chen; Yuanfeng Zhang; Yujing Zhang; Yaqing Liu; Shumeng Duan; Yu Ma; Peng Ni; Jianxin Wang; Bo He; Luyao Ren; Ruiwen Ma; Wanwan Hou; Ying Yu; Bingsi Li; Fujun Qiu; Yuan Sun; Zhihong Zhang; Weihong Xu; Xiang Fang; Jinming Li; Leming Shi; Rui Zhang; Yuanting Zheng; Lianhua Dong
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A standardized framework for circulating blood proteomics
err2025-09-23
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PREAI
errXue Cai; Philipp E. Geyer; Yasset Perez-Riverol; Gilbert S. Omenn; Lianhua Dong; Robert Winkler; Sara Ahadi; Philip Lössl; Xiaobo Yu; Cheng Chang; Markus Ralser; Connie R. Jimenez; Yang Zhao; Yu-Ju Chen; Terence C. W. Poon; Nicolai Bache; Leming Shi; Xinhua Dai; Ziyue Wang; Yi Zhu; Xiang Fang; Jochen M. Schwenk; Jennifer E. Van Eyk; Uwe Völker; Tiannan Guo
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Baseline Plasma GPX3 Level Predicts Efficacy of Insulin-Sensitization Drug Chiglitazar in Type 2 Diabetes
err2025-07-29
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PREAI
errZehui Cao; Haonan Chen; Qiaochu Chen; Chen Ding; Leming Shi; Yuanting Zheng
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Molecular subtyping of stage I lung adenocarcinoma via molecular alterations in pre-invasive lesion progression
err2025-03-04
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errShang, Jun; Jiang, He; Zhao, Yue; Yang, Jingcheng; Lin, Yicong; Zhang, Naixin; Ren, Luyao; Chen, Qingwang; Yu, Ying; Shi, Leming; Li, Yuan; Chen, Haiquan; Zheng, Yuanting
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Assessing and mitigating batch effects in large-scale omics studies
err2024-10-03
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errYu, Ying; Mai, Yuanbang; Zheng, Yuanting; Shi, Leming
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A real-world multi-center RNA-seq benchmarking study using the Quartet and MAQC reference materials
err2024-07-22
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errWang, Duo; Liu, Yaqing; Zhang, Yuanfeng; Chen, Qingwang; Han, Yanxi; Hou, Wanwan; Liu, Cong; Yu, Ying; Li, Ziyang; Li, Ziqiang; Zhao, Jiaxin; Shi, Leming; Zheng, Yuanting; Li, Jinming; Zhang, Rui
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Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
err2024-06-20
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errMasood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G.; Zheng, Lily; Zhao, Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross Jr, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A.; Xiao, Wenming; Meerzaman, Daoud M.
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Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits
err2024-04-19
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errPeng, Qianqian; Liu, Xinxuan; Li, Wenran; Jing, Han; Li, Jiarui; Gao, Xingjian; Luo, Qi; Breeze, Charles E.; Pan, Siyu; Zheng, Qiwen; Li, Guochao; Qian, Jiaqiang; Yuan, Liyun; Yuan, Na; You, Chenglong; Du, Siyuan; Zheng, Yuanting; Yuan, Ziyu; Tan, Jingze; Jia, Peilin; Wang, Jiucun; Zhang, Guoqing; Lu, Xianping; Shi, Leming; Guo, Shicheng; Liu, Yun; Ni, Ting; Wen, Bo; Zeng, Changqing; Jin, Li; Teschendorff, Andrew E.; Liu, Fan; Wang, Sijia
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Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
err2024-03-25
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errGong, Binsheng; Li, Dan; Zhang, Yifan; Kusko, Rebecca; Lababidi, Samir; Cao, Zehui; Chen, Mingyang; Chen, Ning; Chen, Qiaochu; Chen, Qingwang; Dai, Jiacheng; Gan, Qiang; Gao, Yuechen; Guo, Mingkun; Hariani, Gunjan; He, Yujie; Hou, Wanwan; Jiang, He; Kushwaha, Garima; Li, Jian-Liang; Li, Jianying; Li, Yulan; Liu, Liang-Chun; Liu, Ruimei; Liu, Shiming; Meriaux, Edwin; Mo, Mengqing; Moore, Mathew; Moss, Tyler J.; Niu, Quanne; Patel, Ananddeep; Ren, Luyao; Saremi, Nedda F.; Shang, Erfei; Shang, Jun; Song, Ping; Sun, Siqi; Urban, Brent J.; Wang, Danke; Wang, Shangzi; Wen, Zhining; Xiong, Xiangyi; Yang, Jingcheng; Yin, Lihui; Zhang, Chao; Zhang, Ruolan; Bhandari, Ambica; Cai, Wanshi; Eterovic, Agda Karina; Megherbi, Dalila B.; Shi, Tieliu; Suo, Chen; Yu, Ying; Zheng, Yuanting; Novoradovskaya, Natalia; Sears, Renee L.; Shi, Leming; Jones, Wendell; Tong, Weida; Xu, Joshua
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Reliable biological and multi-omics research through biometrology
err2024-03-20
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PREAI
errDong, Lianhua; Zhang, Yu; Fu, Boqiang; Swart, Claudia; Jiang, Huayan; Liu, Yahui; Huggett, Jim; Wielgosz, Robert; Niu, Chunyan; Li, Qianyi; Zhang, Yongzhuo; Park, Sang-Ryoul; Sui, Zhiwei; Yu, Lianchao; Liu, Yangyang; Xie, Qing; Zhang, Hongfu; Yang, Yueyuxiao; Dai, Xinhua; Shi, Leming; Yin, Ye; Fang, Xiang
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Reference Materials for Improving Reliability of Multiomics Profiling
err2024-03-06
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errRen, Luyao; Shi, Leming; Zheng, Yuanting
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Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities
err2024-02-12
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PREAI
errJiang, Yi-Zhou; Ma, Ding; Jin, Xi; Xiao, Yi; Yu, Ying; Shi, Jinxiu; Zhou, Yi-Fan; Fu, Tong; Lin, Cai-Jin; Dai, Lei-Jie; Liu, Cheng-Lin; Zhao, Shen; Su, Guan-Hua; Hou, Wanwan; Liu, Yaqing; Chen, Qingwang; Yang, Jingcheng; Zhang, Naixin; Zhang, Wen-Juan; Liu, Wei; Ge, Weigang; Yang, Wen-Tao; You, Chao; Gu, Yajia; Kaklamani, Virginia; Bertucci, Francois; Verschraegen, Claire; Daemen, Anneleen; Shah, Nakul M.; Wang, Ting; Guo, Tiannan; Shi, Leming; Perou, Charles M.; Zheng, Yuanting; Huang, Wei; Shao, Zhi-Ming
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High Intensity Focused Ultrasound-Driven Nanomotor for Effective Ferroptosis-Immunotherapy of TNBC
err2024-02-11
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errYu, Xiangrong; Li, Xuejing; Chen, Qingwang; Wang, Siyu; Xu, Ruizhe; He, Ying; Qin, Xifeng; Zhang, Jun; Yang, Wuli; Shi, Leming; Lu, Ligong; Zheng, Yuanting; Pang, Zhiqing; Peng, Shaojun
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