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William J. Greenleaf

Chan Zuckerberg Biohub

87H-index
509Paper Count
4.8WCitation Count
Published Papers 139
Publication Date
Single-cell chromatin state transitions during epigenetic memory formation
err2026-07-23
err0
errOAAI
errTaihei Fujimori; Abby R. Thurm; Simon Gaudin; Carolina Rios-Martinez; Benjamin R. Doughty; Michaela M. Hinks; Joydeb Sinha; Derek Le; Antonina Hafner; William J. Greenleaf; Alistair N. Boettiger; Lacramioara Bintu
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An encyclopedia of human enhancer–gene regulatory interactions
errNature
IF48.5
err2026-07-15
err0
errOAAI
errAndreas R. Gschwind; Kristy S. Mualim; Alireza Karbalayghareh; Maya U. Sheth; Kushal K. Dey; Evelyn Jagoda; Ramil N. Nurtdinov; Wang Xi; Anthony S. Tan; James Galante; Hank Jones; X. Rosa Ma; David Yao; Dulguun Amgalan; Judhajeet Ray; Chad J. Munger; Joseph Nasser; Žiga Avsec; Benjamin T. James; Muhammad S. Shamim; Neva C. Durand; Suhas S. P. Rao; Ragini Mahajan; Benjamin R. Doughty; Kalina Andreeva; Jacob C. Ulirsch; Kaili Fan; Elizabeth M. Perez; Tri C. Nguyen; David R. Kelley; Hilary K. Finucane; Jill E. Moore; Zhiping Weng; Manolis Kellis; Michael C. Bassik; Berk Ustun; Alkes L. Price; Michael A. Beer; Roderic Guigó; John A. Stamatoyannopoulos; Erez Lieberman Aiden; William J. Greenleaf; Christina S. Leslie; Lars M. Steinmetz; Anshul Kundaje; Jesse M. Engreitz
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Epigenetic landscape; key transcriptional regulators; and in vivo identification of human Tr1 cells
err2026-07-10
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errOAAI
errAlma-Martina Cepika; Laura Amaya; Colin Waichler; Mansi Narula; Michelle Mantilla; Benjamin C. Thomas; Pauline P. Chen; Robert A. Freeborn; Mara Pavel-Dinu; Jason Nideffer; Matthew Porteus; Rosa Bacchetta; Fabian Müller; William J. Greenleaf; Howard Y. Chang; Maria Grazia Roncarolo
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Prediction and functional interpretation of inter-chromosomal genome architecture from DNA sequence with TwinC
err2026-04-20
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errOAAI
errAnupama Jha; Borislav Hristov; Xiao Wang; Sheng Wang; William J. Greenleaf; Anshul Kundaje; Erez Lieberman Aiden; Alessandro Bertero; William Stafford Noble
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Multiomics and deep learning dissect regulatory syntax in human development
errNature
IF48.5
err2026-04-08
err0
errOAAI
errBetty B. Liu; Selin Jessa; Samuel H. Kim; Yan Ting Ng; Soon Il Higashino; Georgi K. Marinov; Derek C. Chen; Benjamin E. Parks; Li Li; Tri C. Nguyen; Austin T. Wang; Sean K. Wang; Meng How Tan; Serena Y. Tan; Michael Kosicki; Len A. Pennacchio; Eyal Ben-David; Anca M. Pasca; Anshul Kundaje; Kyle K. H. Farh; William J. Greenleaf
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Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells
errCell
IF42.5
err2025-11-26
err0
errOAAI
errJulia M. Schaepe; Torbjörn Fries; Benjamin R. Doughty; Vivekanandan Ramalingam; Betty B. Liu; Olivia J. Crocker; Georgi K. Marinov; Michaela M. Hinks; Emil Marklund; William J. Greenleaf
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Polyclonal origins of human premalignant colorectal lesions
errNature
IF48.5
err2025-11-25
err0
PREAI
errDebra Van Egeren; Ryan O. Schenck; Aziz Khan; Aaron M. Horning; Shanlan Mo; Clemens L. Weiß; Edward D. Esplin; Winston R. Becker; Si Wu; Casey Hanson; Nasim Barapour; Lihua Jiang; Kévin Contrepois; Hayan Lee; Stephanie A. Nevins; Tuhin K. Guha; Hao Zhang; Zhen He; Zhicheng Ma; Emma Monte; Thomas V. Karathanos; Rozelle Laquindanum; Meredith A. Mills; Hassan Chaib; Roxanne Chiu; Ruiqi Jian; Joanne Chan; Mathew Ellenberger; Bahareh Bahmani; Basil Michael; Annika K. Weimer; D. Glen Esplin; Samuel Lancaster; Jeanne Shen; Uri Ladabaum; Teri A. Longacre; Anshul Kundaje; William J. Greenleaf; Zheng Hu; James M. Ford; Michael P. Snyder; Christina Curtis
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Compact RNA sensors for increasingly complex functions of multiple inputs
err2025-11-12
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errOAAI
errChristian A. Choe; Johan O. L. Andreasson; Feriel Melaine; Wipapat Kladwang; Michelle J. Wu; Fernando Portela; Roger Wellington-Oguri; John J. Nicol; Hannah K. Wayment-Steele; Michael Gotrik; Purvesh Khatri; William J. Greenleaf; Rhiju Das
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Innate immune molecular landscape following controlled human influenza virus infection
err2025-09-16
err0
PREAI
errWilliam Thistlethwaite; Sindhu Vangeti; Wan-Sze Cheng; Pankaj Agarwal; Antonio Cappuccio; Wenliang Wang; Bei Wei; Rachel Myers; Aliza B. Rubenstein; Daniel Chawla; Manoj Hariharan; Micah T. McClain; Thomas W. Burke; Steven H. Kleinstein; Joseph R. Ecker; Christopher W. Woods; William J. Greenleaf; Xi Chen; Irene Ramos; Elena Zaslavsky; Thomas G. Evans; Olga G. Troyanskaya; Stuart C. Sealfon
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Thymic epithelial cells amplify epigenetic noise to promote immune tolerance
errNature
IF48.5
err2025-08-20
err0
errOAAI
errNoah Gamble; Jason A. Caldwell; Joshua McKeever; Caroline Kaiser; Alexandra Bradu; Peyton J. Dooley; Sandy Klemm; William J. Greenleaf; Narutoshi Hibino; Aaron R. Dinner; Andrew S. Koh
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Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis
err2024-10-30
err1
errOAAI
errEsplin, Edward D.; Hanson, Casey; Wu, Si; Horning, Aaron M.; Barapour, Nasim; Nevins, Stephanie A.; Jiang, Lihua; Contrepois, Kevin; Lee, Hayan; Guha, Tuhin K.; Hu, Zheng; Laquindanum, Rozelle; Mills, Meredith A.; Chaib, Hassan; Chiu, Roxanne; Jian, Ruiqi; Chan, Joanne; Ellenberger, Mathew; Becker, Winston R.; Bahmani, Bahareh; Khan, Aziz; Michael, Basil; Weimer, Annika K.; Esplin, D. Glen; Shen, Jeanne; Lancaster, Samuel; Monte, Emma; Karathanos, Thomas V.; Ladabaum, Uri; Longacre, Teri A.; Kundaje, Anshul; Curtis, Christina; Greenleaf, William J.; Ford, James M.; Snyder, Michael P.
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Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis
err2024-10-30
err2
errOAAI
errZhu, Yizhou; Lee, Hayan; White, Shannon; Weimer, Annika K.; Monte, Emma; Horning, Aaron; Nevins, Stephanie A.; Esplin, Edward D.; Paul, Kristina; Krieger, Gat; Shipony, Zohar; Chiu, Roxanne; Laquindanum, Rozelle; Karathanos, Thomas V.; Chua, Melissa W. Y.; Mills, Meredith; Ladabaum, Uri; Longacre, Teri; Shen, Jeanne; Jaimovich, Ariel; Lipson, Doron; Kundaje, Anshul; Greenleaf, William J.; Curtis, Christina; Ford, James M.; Snyder, Michael P.
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Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs
errRNA
IF5
err2024-10-03
err0
errOAAI
errShin, John H.; Cuevas, Lena M.; Roy, Rohit; Bonilla, Steve L.; Al-Hashimi, Hashim; Greenleaf, William J.; Herschlag, Daniel
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Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors
err2024-07-13
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errOAAI
errKim, YeEun; Calderon, Ariel A.; Favaro, Patricia; Glass, David R.; Tsai, Albert G.; Ho, Daniel; Borges, Luciene; Greenleaf, William J.; Bendall, Sean C.
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PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape (vol 25, pg 860, 2024)
err2024-05-16
err0
errOAAI
errGamble, Noah; Bradu, Alexandra; Caldwell, Jason A.; McKeever, Joshua; Bolonduro, Olubusayo; Ermis, Ebru; Kaiser, Caroline; Kim, YeEun; Parks, Benjamin; Klemm, Sandy; Greenleaf, William J.; Crabtree, Gerald R.; Koh, Andrew S.
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The killifish germline regulates longevity and somatic repair in a sex-specific manner
err2024-05-15
err3
PREAI
errMoses, Eitan; Atlan, Tehila; Sun, Xue; Franek, Roman; Siddiqui, Atif; Marinov, Georgi K.; Shifman, Sagiv; Zucker, David M.; Oron-Gottesman, Adi; Greenleaf, William J.; Cohen, Ehud; Ram, Oren; Harel, Itamar
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PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape
err2024-04-17
err4
errOAAI
errGamble, Noah; Bradu, Alexandra; Caldwell, Jason A.; McKeever, Joshua; Bolonduro, Olubusayo; Ermis, Ebru; Kaiser, Caroline; Kim, YeEun; Parks, Benjamin; Klemm, Sandy; Greenleaf, William J.; Crabtree, Gerald R.; Koh, Andrew S.
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Multi-ancestral origins of colorectal lesionsMulti-ancestral origins of colorectal lesions
err2024-03-22
err0
PREAI
errSchenck, Ryan O.; Khan, Aziz; Horning, Aaron; Esplin, Edward D.; Van Egeren, Debra; Greenleaf, William; Ford, James M.; Snyder, Michael P.; Curtis, Christina
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Multicenter integrated analysis of noncoding CRISPRi screens
err2024-03-19
err10
errOAAI
errYao, David; Tycko, Josh; Oh, Jin Woo; Bounds, Lexi R.; Gosai, Sager J.; Lataniotis, Lazaros; Mackay-Smith, Ava; Doughty, Benjamin R.; Gabdank, Idan; Schmidt, Henri; Guerrero-Altamirano, Tania; Siklenka, Keith; Guo, Katherine; White, Alexander D.; Youngworth, Ingrid; Andreeva, Kalina; Ren, Xingjie; Barrera, Alejandro; Luo, Yunhai; Yardimci, Galip Gurkan; Tewhey, Ryan; Kundaje, Anshul; Greenleaf, William J.; Sabeti, Pardis C.; Leslie, Christina; Pritykin, Yuri; Moore, Jill E.; Beer, Michael A.; Gersbach, Charles A.; Reddy, Timothy E.; Shen, Yin; Engreitz, Jesse M.; Bassik, Michael C.; Reilly, Steven K.
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