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Robert Homer

Yale School of Medicine

92H-index
611Paper Count
3.7WCitation Count
Published Papers 120
Publication Date
Author Correction: Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
errNature
IF48.5
err2026-08-11
err0
PREAI
errTongwu Zhang; Wei Zhao; Christopher Wirth; Marcos Díaz-Gay; Jinhu Yin; Monia Cecati; Francesca Marchegiani; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Jian Sang; John P. McElderry; Michelle Antony; Alyssa Klein; Azhar Khandekar; Caleb Hartman; Jennifer Rosenbaum; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Neil E. Caporaso; Maria Pik Wong; Kin Chung Leung; Chao Agnes Hsiung; Chih-Yi Chen; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Milan Savic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Lixing Yang; Bin Zhu; Jianxin Shi; Kevin Brown; Nathaniel Rothman; Stephen J. Chanock; Ludmil B. Alexandrov; Jiyeon Choi; Maurizio Cardelli; Qing Lan; Martin A. Nowak; David C. Wedge; Maria Teresa Landi
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Using Fiji as a simplified tool for assessing alveolar chord length and septal thickness in neonatal pulmonary disease research
err2026-04-02
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errOAAI
errPragnya Das; Emanuele Martini; Osama Aloudat; Emily Tran; Divya T. Rajendran; Beamon Agarwal; Robert J. Homer; Vineet Bhandari
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Genomic Characterization of Lung Cancer in Never-Smokers Using Deep Learning
err2026-02-02
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PREAI
errMonjoy Saha; Thi-Van-Trinh Tran; Praphulla MS. Bhawsar; Tongwu Zhang; Wei Zhao; Phuc H. Hoang; Karun Mutreja; Scott M. Lawrence; Nathaniel Rothman; Qing Lan; Robert Homer; Marina K. Baine; Lynette M. Sholl; Philippe Joubert; Charles Leduc; William D. Travis; Stephen J. Chanock; Jianxin Shi; Soo-Ryum Yang; Jonas S. Almeida
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Aberrant cellular communities underlying disease heterogeneity in chronic obstructive pulmonary disease
err2026-01-23
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errOAAI
errYuening Zhang; Huanhuan Wei; Jessica Nouws; Wenhao Jiang; Reginald M. Brewster; Jenny P. Nguyen; SiRu Liang; Samuel M. Pass; Weiwei Wang; Florine Collin; Angela Taravella Oill; Sang-Hun Kim; Saul S. Siller; Jinjiang Liu; Amy Y. Zhao; Phillip Hansbro; Charles Dela Cruz; Clemente Britto; Jose Gomez; Suzanne M. Cloonan; Erica L. Herzog; TuKiet T. Lam; Nicholas E. Banovich; Micha Sam B. Raredon; Xuchen Zhang; Stefano Mangiola; Robert J. Homer; Naftali Kaminski; John McDonough; Francesca Polverino; Xiting Yan; Maor Sauler
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Microbiome analysis of 940 lung cancers in never-smokers reveals lack of clinically relevant associations
err2025-12-12
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errOAAI
errJohn P. McElderry; Tongwu Zhang; Wei Zhao; Phuc H. Hoang; Samuel Anyaso-Samuel; Jian Sang; Azhar Khandekar; Caleb Hartman; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia Lee; Sunandini Sharma; Kristine M. Jones; Bin Zhu; Marcos Díaz-Gay; Luis Mas; Oscar Gerardo Arrieta Rodriguez; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Vladimir Janout; Dana Mates; Simona Ognjanovic; Milan Savic; Milica Kontic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Maria Pik Wong; Kin Chung Leung; Chih-Yi Chen; Chao Agnes Hsiung; Nathaniel Rothman; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Robert Homer; Soo-Ryum Yang; Qing Lan; Martin A. Nowak; David C. Wedge; Ludmil B. Alexandrov; Stephen J. Chanock; Emily Vogtmann; Christian C. Abnet; Jianxin Shi; Maria Teresa Landi
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Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
errNature
IF48.5
err2025-12-10
err0
PREAI
errTongwu Zhang; Wei Zhao; Christopher Wirth; Marcos Díaz-Gay; Jinhu Yin; Monia Cecati; Francesca Marchegiani; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Jian Sang; John P. McElderry; Michelle Antony; Alyssa Klein; Azhar Khandekar; Caleb Hartman; Jennifer Rosenbaum; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Neil E. Caporaso; Maria Pik Wong; Kin Chung Leung; Chao Agnes Hsiung; Chih-Yi Chen; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Milan Savic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Lixing Yang; Bin Zhu; Jianxin Shi; Kevin Brown; Nathaniel Rothman; Stephen J. Chanock; Ludmil B. Alexandrov; Jiyeon Choi; Maurizio Cardelli; Qing Lan; Martin A. Nowak; David C. Wedge; Maria Teresa Landi
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The mutagenic forces shaping the genomes of lung cancer in never smokers
errNature
IF48.5
err2025-07-02
err0
PREAI
errMarcos Díaz-Gay; Tongwu Zhang; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Azhar Khandekar; Wei Zhao; Christopher D. Steele; Burçak Otlu; Shuvro P. Nandi; Raviteja Vangara; Erik N. Bergstrom; Mariya Kazachkova; Oriol Pich; Charles Swanton; Chao Agnes Hsiung; I-Shou Chang; Maria Pik Wong; Kin Chung Leung; Jian Sang; John P. McElderry; Caleb Hartman; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Pilar Gallego-García; Yang Yang; Xiaoming Zhong; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Millica Kontic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Lixing Yang; Martin A. Nowak; Jianxin Shi; Nathaniel Rothman; David C. Wedge; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Qing Lan; Bin Zhu; Stephen J. Chanock; Jiyeon Choi; Ludmil B. Alexandrov; Maria Teresa Landi
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APOBEC affects tumor evolution and age at onset of lung cancer in smokers
err2025-05-21
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errOAAI
errZhang, Tongwu; Sang, Jian; Hoang, Phuc H.; Zhao, Wei; Rosenbaum, Jennifer; Johnson, Kofi Ennu; Klimczak, Leszek J.; McElderry, John; Klein, Alyssa; Wirth, Christopher; Bergstrom, Erik N.; Diaz-Gay, Marcos; Vangara, Raviteja; Colon-Matos, Frank; Hutchinson, Amy; Lawrence, Scott M.; Cole, Nathan; Zhu, Bin; Przytycka, Teresa M.; Shi, Jianxin; Caporaso, Neil E.; Homer, Robert; Pesatori, Angela C.; Consonni, Dario; Imielinski, Marcin; Chanock, Stephen J.; Wedge, David C.; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Harris, Reuben S.; Landi, Maria Teresa
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Mouse model of SARS-CoV-2 reveals inflammatory role of type I interferon signaling (vol 217, e20201241, 2020)
err2025-02-26
err0
errOAAI
errIsraelow, Benjamin; Song, Eric; Mao, Tianyang; Lu, Peiwen; Meir, Amit; Liu, Feimei; Alfajaro, Mia Madel; Wei, Jin; Dong, Huiping; Homer, Robert J.; Ring, Aaron; Wilen, Craig B.
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SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data
err2024-10-14
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errOAAI
errLiu, Yunqing; Li, Ningshan; Qi, Ji; Xu, Gang; Zhao, Jiayi; Wang, Nating; Huang, Xiayuan; Jiang, Wenhao; Wei, Huanhuan; Justet, Aurelien; Adams, Taylor S.; Homer, Robert; Amei, Amei; Rosas, Ivan O.; Kaminski, Naftali; Wang, Zuoheng; Yan, Xiting
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Harnessing the Power of Generative Artificial Intelligence in Pathology Education Opportunities, Challenges, and Future Directions
err2024-09-30
err1
errOAAI
errCecchini, Matthew J.; Borowitz, Michael J.; Glassy, Eric F.; Gullapalli, Rama R.; Hart, Steven N.; Hassell, Lewis A.; Homer, Robert J.; Jackups, Ronald, Jr.; Mcneal, Jeffrey L.; Anderson, Scott R.
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Deciphering lung adenocarcinoma evolution and the role of LINE-1 retrotransposition
err2024-04-05
err0
PREAI
errZhang, Tongwu; Zhao, Wei; Wirth, Christopher; Diaz-Gay, Marcos; Yin, Jinhu; Hoang, Phuc H.; Sang, Jian; McElderry, John; Klein, Alyssa; Khandekar, Azhar; Hartman, Caleb; Rosenbaum, Jennifer; Colon-Matos, Frank; Jones, Kristine M.; Caporaso, Neil E.; Homer, Robert; Pesatori, Angela C.; Consonni, Dario; Yang, Lixing; Zhu, Bin; Shi, Jianxin; Brown, Kevin; Rothman, Nathaniel; Chanock, Stephen J.; Alexandrov, Ludmil B.; Choi, Jiyeon; Cardelli, Maurizio; Lan, Qing; Nowak, Martin A.; Wedge, David C.; Landi, Maria Teresa
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ASCL1 Drives Tolerance to Osimertinib in EGFR Mutant Lung Cancer in Permissive Cellular Contexts
err2024-02-15
err3
PREAI
errHu, Bomiao; Wiesehoefer, Marc; de Miguel, Fernando J.; Liu, Zongzhi; Chan, Lok-Hei; Choi, Jungmin; Melnick, Mary Ann; Arnal Estape, Anna; Walther, Zenta; Zhao, Dejian; Lopez-Giraldez, Francesc; Wurtz, Anna; Cai, Guoping; Fan, Rong; Gettinger, Scott; Xiao, Andrew; Yan, Qin; Homer, Robert; Nguyen, Don X.; Politi, Katerina
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EGFR-Driven Lung Adenocarcinomas Co-opt Alveolar Macrophage Metabolism and Function to Support EGFR Signaling and Growth
err2024-01-25
err8
PREAI
errKuhlmann-Hogan, Alexandra; Cordes, Thekla; Xu, Ziyan; Kuna, Ramya S.; Traina, Kacie A.; Robles-Oteiza, Camila; Ayeni, Deborah; Kwong, Elizabeth M.; Levy, Stellar; Globig, Anna-Maria; Nobari, Matthew M.; Cheng, George Z.; Leibel, Sandra L.; Homer, Robert J.; Shaw, Reuben J.; Metallo, Christian M.; Politi, Katerina; Kaech, Susan M.
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Assessment of Pathology Domain-Specific Knowledge of ChatGPT and Comparison to Human Performance
err2024-01-20
err14
errOAAI
errWang, Andrew Y.; Lin, Sherman; Tran, Christopher; Homer, Robert J.; Wilsdon, Dan; Walsh, Joanna C.; Goebel, Emily A.; Sansano, Irene; Sonawane, Snehal; Cockenpot, Vincent; Mukhopadhyay, Sanjay; Taskin, Toros; Zahra, Nusrat; Cima, Luca; Semerci, Orhan; Ozamrak, Birsen Gizem; Mishra, Pallavi; Vennavalli, Naga Sarika; Chen, Po-Hsuan Cameron; Cecchini, Matthew J.
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Alveolar Vascular Remodeling in Nonspecific Interstitial Pneumonia: Replacement of Normal Lung Capillaries with COL15A1-Positive Endothelial Cells
err2023-10-01
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errOAAI
errSchupp, Jonas C.; Manning, Edward P.; Chioccioli, Maurizio; Kamp, Jan C.; Christian, Leonard; Ryu, Changwan; Herzog, Erica; Kuehnel, Mark P.; Prasse, Antje; Kaminski, Naftali; Jonigk, Danny D.; Homer, Robert J.
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SRC and TKS5 mediated podosome formation in fibroblasts promotes extracellular matrix invasion and pulmonary fibrosis
err2023-09-21
err6
errOAAI
errBarbayianni, Ilianna; Kanellopoulou, Paraskevi; Fanidis, Dionysios; Nastos, Dimitris; Ntouskou, Eleftheria-Dimitra; Galaris, Apostolos; Harokopos, Vaggelis; Hatzis, Pantelis; Tsitoura, Eliza; Homer, Robert; Kaminski, Naftali; Antoniou, Katerina M.; Crestani, Bruno; Tzouvelekis, Argyrios; Aidinis, Vassilis
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