arrow
Back
B

Beatrice S. Knudsen

University of Utah

59H-index
353Paper Count
1.9WCitation Count
Published Papers 111
Publication Date
Comparison of QuPath and HALO platforms for analysis of the tumor microenvironment in prostate cancer
err2025-09-24
err0
PREAI
errWei Zhang; Qin Zhou; Jonathan V. Nguyen; Erika Egal; Qian Yang; Michael R. Freeman; Siwen Hu-Lieskovan; Gita Suneja; Anna Coghill; Beatrice S. Knudsen
errShare
errSave
Measuring and predicting where and when pathologists focus their visual attention while grading whole slide images of cancer
err2025-08-28
err0
PREAI
errSouradeep Chakraborty; Ruoyu Xue; Rajarsi Gupta; Oksana Yaskiv; Constantin Friedman; Natallia Sheuka; Dana Perez; Paul Friedman; Won-Tak Choi; Waqas Mahmud; Beatrice Knudsen; Gregory Zelinsky; Joel Saltz; Dimitris Samaras
errShare
errSave
CLASS-M: Adaptive stain separation-based contrastive learning with pseudo-labeling for histopathological image classification
err2025-07-08
err0
errOAAI
errBodong Zhang; Hamid Manoochehri; Man Minh Ho; Fahimeh Fooladgar; Yosep Chong; Beatrice S. Knudsen; Deepika Sirohi; Tolga Tasdizen
errShare
errSave
ONECUT2 reprograms neuroendocrine fate and is an actionable therapeutic target in small cell lung cancer
err2025-06-11
err0
errOAAI
errMirian Gutiérrez; Irene Zamora; Raquel Iriarte; María José Pajares; Qian Yang; Chen Qian; Nerea Otegui; Joaquín Fernández-Irigoyen; Enrique Santamaría; Nicolas Alcala; Alexandra Sexton-Oates; Lynnette Fernández-Cuesta; Miguel Barajas; Alfonso Calvo; Luis M. Montuenga; Beatrice Knudsen; Sungyong You; Michael R. Freeman; Ignacio Encío; Mirja Rotinen
errShare
errSave
Comprehensive biobanking strategy with clinical impact at the European Cancer Moonshot Lund Center
err2025-05-01
err0
errOAAI
errOskolas, Henriett; Nogueira, Fabio C. N.; Domont, Gilberto B.; Yu, Kun-Hsing; Semenov, Yevgeniy R.; Sorger, Peter; Steinfelder, Erik; Corps, Les; Schulz, Lesley; Wieslander, Elisabet; Fenyo, David; Karpati, Sarolta; Hollo, Peter; Kemeny, Lajos, V; Dome, Balazs; Megyesfalvi, Zsolt; Pawlowski, Krzysztof; Nishimura, Toshihide; Kwon, Hojeong; Encarnacion-Guevara, Sergio; Szasz, A. Marcell; Vereb, Zoltan; Gyulai, Rolland; Nemeth, Istvan Balazs; Appelqvist, Roger; Rezeli, Melinda; Baldetorp, Bo; Horvatovich, Peter; Malmstrom, Johan; Pla, Indira; Sanchez, Aniel; Knudsen, Beatrice; Kiss, Andras; Malm, Johan; Marko-Varga, Gyorgy; Gil, Jeovanis
errShare
errSave
ONECUT2 acts as a lineage plasticity driver in adenocarcinoma as well as neuroendocrine variants of prostate cancer
err2024-06-27
err5
errOAAI
errQian, Chen; Yang, Qian; Rotinen, Mirja; Huang, Rongrong; Kim, Hyoyoung; Gallent, Brad; Yan, Yiwu; Cadaneanu, Radu M.; Zhang, Baohui; Kaochar, Salma; Freedland, Stephen J.; Posadas, Edwin M.; Ellis, Leigh; Di Vizio, Dolores; Morrissey, Colm; Nelson, Peter S.; Brady, Lauren; Murali, Ramachandran; Campbell, Moray J.; Yang, Wei; Knudsen, Beatrice S.; Mostaghel, Elahe A.; Ye, Huihui; Garraway, Isla P.; You, Sungyong; Freeman, Michael R.
errShare
errSave
A Pipeline for Evaluation of Machine Learning/Artificial Intelligence Models to Quantify Programmed Death Ligand 1 Immunohistochemistry
err2024-06-01
err2
errOAAI
errKnudsen, Beatrice S.; Jadhav, Alok; Perry, Lindsey J.; Thagaard, Jeppe; Deftereos, Georgios; Ying, Jian; Brintz, Ben J.; Zhang, Wei
errShare
errSave
HistoEM: A Pathologist-Guided and Explainable Workflow Using Histogram Embedding for Gland Classification
err2024-04-01
err4
PREAI
errFerrero, Alessandro; Ghelichkhan, Elham; Manoochehri, Hamid; Ho, Man Minh; Albertson, Daniel J.; Brintz, Benjamin J.; Tasdizen, Tolga; Whitaker, Ross T.; Knudsen, Beatrice S.
errShare
errSave
iQC: machine-learning-driven prediction of surgery reveals systematic confounds in cancer whole slide images from hospitals by protocol
err2024-03-22
err0
PREAI
errSchaumberg, Andrew J.; Lewis, Michael S.; Nazarian, Ramin; Wadhwa, Ananta; Kane, Nathanael; Turner, Graham; Karnam, Purushotham; Devineni, Poornima; Wolfe, Nicholas; Kintner, Randall; Rettig, Matthew B.; Knudsen, Beatrice S.; Garraway, Isla P.; Pyarajan, Saiju
errShare
errSave
ONECUT2 activates diverse resistance drivers of androgen receptor-independent heterogeneity in prostate cancer
err2024-03-22
err0
PREAI
errQian, Chen; Yang, Qian; Rotinen, Mirja; Huang, Rongrong; Kim, Hyoyoung; Gallent, Brad; Yan, Yiwu; Cadaneanu, Radu M.; Zhang, Baohui; Kaochar, Salma; Freedland, Stephen J.; Posadas, Edwin M.; Ellis, Leigh; Di Vizio, Dolores; Morrissey, Colm; Nelson, Peter S.; Brady, Lauren; Murali, Ramachandran; Campbell, Moray J.; Yang, Wei; Knudsen, Beatrice S.; Mostaghel, Elahe A.; Ye, Huihui; Garraway, Isla P.; You, Sungyong; Freeman, Michael R.
errShare
errSave
Cyclin D1 induces Akt1 activity in RB deficient prostate cancer
err2024-03-22
err0
PREAI
errJiao, Xuanmao; Ashton, Anthony W.; Li, Zhiping; Harish, Ritika; Li, Danni; Robertson, Gordon; Shen, Duanwen; Ju, Xiaoming; Chen, Ke; Zhang, Wei; Archilefu, Samuel; Iczkowski, Kenneth A.; Rui, Hallgeir; Knudsen, Beatrice; Timpson, Paul; Nobis, Max; Pestell, Richard G.
errShare
errSave
Automating Ground Truth Annotations for Gland Segmentation Through Immunohistochemistry
err2023-12-01
err7
errOAAI
errKataria, Tushar; Rajamani, Saradha; Ayubi, Abdul Bari; Bronner, Mary; Jedrzkiewicz, Jolanta; Knudsen, Beatrice S.; Elhabian, Shireen Y.
errShare
errSave
Biophysical phenotype mixtures reveal advantages for tumor muscle invasion in vivo
err2023-11-01
err2
errOAAI
errMarr, Kendra D.; Gard, Jaime M. C.; Harryman, William L.; Keeswood, Elijah J.; Paxson, Allan I.; Wolgemuth, Charles; Knudsen, Beatrice S.; Nagle, Raymond B.; Hazlehurst, Lori; Sorbellini, Maximiliano; Cress, Anne E.
errShare
errSave
Organ-specific immunity: A tissue analysis framework for investigating local immune responses to SARS-CoV-2
err2023-10-01
err1
errOAAI
errNg, Alphonsus H. C.; Hu, Huiqian; Wang, Kai; Scherler, Kelsey; Warren, Sarah E.; Zollinger, Daniel R.; McKay-Fleisch, Jill; Sorg, Kristina; Beechem, Joseph M.; Ragaglia, Emily; Lacy, J. Matthew; Smith, Kelly D.; Marshall, Desiree A.; Bundesmann, Michael M.; de Castilla, Diego Lopez; Corwin, David; Yarid, Nicole; Knudsen, Beatrice S.; Lu, Yue; Goldman, Jason D.; Heath, James R.
errShare
errSave
ONECUT2 activates diverse drug-resistant phenotypes in prostate cancer
err2023-06-02
err0
PREAI
errQian, Chen; Yang, Qian; Kim, HyoYoung; Yan, Yiwu; Mostaghel, Elahe; Ellis, Leigh; Knudsen, Beatrice; Kaochar, Salma; Ye, Huihui; Garraway, Isla; You, Sungyong; Freeman, Michael
errShare
errSave
Epidermal growth factor receptor-dependent regulation of integrin-mediated signaling and cell cycle entry in epithelial cells
err2023-03-27
err167
errOAAI
errBill, HM; Knudsen, B; Moores, SL; Muthuswamy, SK; Rao, VR; Brugge, JS; Miranti, CK
errShare
errSave
Stromal AR inhibits prostate tumor progression by restraining secretory luminal epithelial cells
err2022-05-01
err11
errOAAI
errLiu, Yueli; Wang, Jiawen; Horton, Corrigan; Yu, Chuan; Knudsen, Beatrice; Stefanson, Joshua; Hu, Kevin; Stefanson, Ofir; Green, Jonathan; Guo, Charlene; Xie, Qing; Wang, Zhu A.
errShare
errSave
Receptor-interacting protein kinase 2 (RIPK2) stabilizes c-Myc and is a therapeutic target in prostate cancer metastasis
err2022-02-03
err30
errOAAI
errYan, Yiwu; Zhou, Bo; Qian, Chen; Vasquez, Alex; Kamra, Mohini; Chatterjee, Avradip; Lee, Yeon-Joo; Yuan, Xiaopu; Ellis, Leigh; Di Vizio, Dolores; Posadas, Edwin M.; Kyprianou, Natasha; Knudsen, Beatrice S.; Shah, Kavita; Murali, Ramachandran; Gertych, Arkadiusz; You, Sungyong; Freeman, Michael R.; Yang, Wei
errShare
errSave
Significant changes in macrophage and CD8 T cell densities in primary prostate tumors 2 weeks after SBRT
err2022-01-20
err8
errOAAI
errKane, Nathanael; Romero, Tahmineh; Diaz-Perez, Silvia; Rettig, Matthew B.; Steinberg, Michael L.; Kishan, Amar U.; Schaue, Dorthe; Reiter, Robert E.; Knudsen, Beatrice S.; Nickols, Nicholas G.
errShare
errSave
The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome
err2021-07-22
err19
errOAAI
errBetancourt, Lazaro Hiram; Gil, Jeovanis; Sanchez, Aniel; Doma, Viktoria; Kuras, Magdalena; Murillo, Jimmy Rodriguez; Velasquez, Erika; Cakir, Ugur; Kim, Yonghyo; Sugihara, Yutaka; Parada, Indira Pla; Szeitz, Beata; Appelqvist, Roger; Wieslander, Elisabet; Welinder, Charlotte; de Almeida, Natalia Pinto; Woldmar, Nicole; Marko-Varga, Matilda; Eriksson, Jonatan; Pawlowski, Krzysztof; Baldetorp, Bo; Ingvar, Christian; Olsson, Hakan; Lundgren, Lotta; Lindberg, Henrik; Oskolas, Henriett; Lee, Boram; Berge, Ethan; Sjogren, Marie; Eriksson, Carina; Kim, Dasol; Kwon, Ho Jeong; Knudsen, Beatrice; Rezeli, Melinda; Malm, Johan; Hong, Runyu; Horvath, Peter; Szasz, A. Marcell; Timar, Jozsef; Karpati, Sarolta; Horvatovich, Peter; Miliotis, Tasso; Nishimura, Toshihide; Kato, Harubumi; Steinfelder, Erik; Oppermann, Madalina; Miller, Ken; Florindi, Francesco; Zhou, Quimin; Domont, Gilberto B.; Pizzatti, Luciana; Nogueira, Fabio C. S.; Szadai, Leticia; Nemeth, Istvan Balazs; Ekedahl, Henrik; Fenyo, David; Marko-Varga, Gyorgy
errShare
errSave