Not logged in cyMAEv2: learning robust cell representations in mass cytometry without supervision Kim, Jaesik; Ionita, Matei; Lee, Matthew Eric; Leiby, Jacob S.; Huang, Yidi; Lee, Jonghyun; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Painter, Mark M.; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon Share Save
Representing immune profiles with self-supervised set representation learning Lee, Matthew Eric; Ionita, Matei; Kim, Jaesik; Lee, Jonghyun; Huang, Yidi; Nam, Yonghyun; McKeague, Michelle L.; Fang, Victoria; Apostolidis, Sokratis A.; Mathew, Divij; Shwetank; Pattekar, Ajinkya; Rangwala, Zahabia; Huang, Alexander; Bar-Or, Amit; Abramoff, Benjamin; Meyer, Nuala; Rhee, Rennie; Schuster, Stephen; Maseda, Damian; Greenplate, Allison R.; Kim, Dokyoon; Wherry, E. John Share Save
Durable T cell immunity to COVID-19 vaccines in MS patients on B cell depletion therapy Davis-Porada, Julia; Tozlu, Ceren; Aiello, Claudia; Apostolidis, Sokratis A.; Bar-Or, Amit; Bove, Riley; Espinoza, Diego A.; Ferreira Brito, Sugeidy; Jacobs, Dina; Kakara, Mihir; Onomichi, Kaho; Ricci, Adelle; Sabatino Jr, Joseph J.; Walker, Elizabeth; Wherry, E. John; Zhang, Lili; Zhu, Wen; Xia, Zongqi; De Jager, Philip; Wesley, Sarah Flanagan; Straus Farber, Rebecca; Farber, Donna L. Share Save
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Efficacy and Safety of Anti-CDI9 and Anti-BCMA Chimeric Antigen Receptor (CAR) T-Cell Therapies in Patients with Autoimmune Disease and Lymphoma or Myeloma Paruzzo, Luca; Bouvier, Riemke; Ghilardi, Guido; Fardella, Eugenio; Fulmer, Bria; Cohen, Ivan J.; Chong, Elise A.; Svoboda, Jakub; Nasta, Sunita D.; Landsburg, Daniel J.; Patel, Vrutti; Ziyu, Li; Pajarillo, Raymone; Waxman, Adam; Cohen, Adam D.; Vogl, Dan T.; Barta, Stefan K.; Porazzi, Patrizia; Fraietta, Joseph A.; Bhoj, Vijay; Garfall, Alfred L.; Stadtmauer, Edward A.; Schuster, Stephen J.; Carter, Jordan S.; Apostolidis, Sokratis A.; Susanibar-Adaniya, Sandra; Ruella, Marco Share Save
Cytometry masked autoencoder: An accurate and interpretable automated immunophenotyper Kim, Jaesik; Ionita, Matei; Lee, Matthew; Mckeague, Michelle L.; Pattekar, Ajinkya; Painter, Mark M.; Wagenaar, Joost; Truong, Van; Norton, Dylan T.; Mathew, Divij; Nam, Yonghyun; Apostolidis, Sokratis A.; Clendenin, Cynthia; Orzechowski, Patryk; Jung, Sang-Hyuk; Woerner, Jakob; Ittner, Caroline A. G.; Turner, Alexandra P.; Esperanza, Mika; Dunn, Thomas G.; Mangalmurti, Nilam S.; Reilly, John P.; Meyer, Nuala J.; Calfee, Carolyn S.; Liu, Kathleen D.; Matthy, Michael A.; Swigart, Lamorna Brown; Burnham, Ellen L.; Mckeehan, Jeffrey; Gandotra, Sheetal; Russel, Derek W.; Gibbs, Kevin W.; Thomas, Karl W.; Barot, Harsh; Greenplate, Allison R.; Wherry, E. John; Kim, Dokyoon Share Save
CD8+T cell exhaustion and their DNA damage in BRCA1 mutated TNBC Pueschl, Dana; Nayak, Anupma; Oldridge, Derek A.; Chandler, William; Fulmer, Bria; Apostolidis, Sokratis; Bragen, Danielle; Wubbenhorst, Bradley; Pluta, John; Antoniou, Antonis; Chenevix-Trench, Georgia; Wherry, E. John; Domchek, Susan M.; Nathanson, Katherine L. Share Save
SARS-CoV-2 infections elicit higher levels of original antigenic sin antibodies compared with SARS-CoV-2 mRNA vaccinations Anderson, Elizabeth M.; Li, Shuk Hang; Awofolaju, Moses; Eilola, Theresa; Goodwin, Eileen; Bolton, Marcus J.; Gouma, Sigrid; Manzoni, Tomaz B.; Hicks, Philip; Goel, Rishi R.; Painter, Mark M.; Apostolidis, Sokratis A.; Mathew, Divij; Dunbar, Debora; Fiore, Danielle; Brock, Amanda; Weaver, JoEllen; Millar, John S.; DerOhannessian, Stephanie; Greenplate, Allison R.; Frank, Ian; Rader, Daniel J.; Wherry, E. John; Bates, Paul; Hensley, Scott E. Share Save
PD-1 directed immunotherapy alters Tfh and humoral immune responses to seasonal influenza vaccine Herati, Ramin Sedaghat; Knorr, David A.; Vella, Laura A.; Silva, Luisa Victoria; Chilukuri, Lakshmi; Apostolidis, Sokratis A.; Huang, Alexander C.; Muselman, Alexander; Manne, Sasikanth; Kuthuru, Oliva; Staupe, Ryan P.; Adamski, Sharon A.; Kannan, Senthil; Kurupati, Raj K.; Ertl, Hildegund C. J.; Wong, Jeffrey L.; Bournazos, Stylianos; McGettigan, Suzanne; Schuchter, Lynn M.; Kotecha, Ritesh R.; Funt, Samuel A.; Voss, Martin H.; Motzer, Robert J.; Lee, Chung-Han; Bajorin, Dean F.; Mitchell, Tara C.; Ravetch, Jeffrey, V; Wherry, E. John Share Save
Signaling Through FcγRIIA and the C5a-C5aR Pathway Mediate Platelet Hyperactivation in COVID-19 Apostolidis, Sokratis A.; Sarkar, Amrita; Giannini, Heather M.; Goel, Rishi R.; Mathew, Divij; Suzuki, Aae; Baxter, Amy E.; Greenplate, Allison R.; Alanio, Cecile; Abdel-Hakeem, Mohamed; Oldridge, Derek A.; Giles, Josephine R.; Wu, Jennifer E.; Chen, Zeyu; Huang, Yinghui Jane; Belman, Jonathan; Pattekar, Ajinkya; Manne, Sasikanth; Kuthuru, Oliva; Dougherty, Jeanette; Weiderhold, Brittany; Weisman, Ariel R.; Ittner, Caroline A. G.; Gouma, Sigrid; Dunbar, Debora; Frank, Ian; Huang, Alexander C.; Vella, Laura A.; Reilly, John P.; Hensley, Scott E.; Rauova, Lubica; Zhao, Liang; Meyer, Nuala J.; Poncz, Mortimer; Abrams, Charles S.; Wherry, E. John Share Save
New-onset IgG autoantibodies in hospitalized patients with COVID-19 Chang, Sarah Esther; Feng, Allan; Meng, Wenzhao; Apostolidis, Sokratis A.; Mack, Elisabeth; Artandi, Maja; Barman, Linda; Bennett, Kate; Chakraborty, Saborni; Chang, Iris; Cheung, Peggie; Chinthrajah, Sharon; Dhingra, Shaurya; Do, Evan; Finck, Amanda; Gaano, Andrew; Gessner, Reinhard; Giannini, Heather M.; Gonzalez, Joyce; Greib, Sarah; Guendisch, Margrit; Hsu, Alex Ren; Kuo, Alex; Manohar, Monali; Mao, Rong; Neeli, Indira; Neubauer, Andreas; Oniyide, Oluwatosin; Powell, Abigail Elizabeth; Puri, Rajan; Renz, Harald; Schapiro, Jeffrey M.; Weidenbacher, Payton A.; Wittman, Rich; Ahuja, Neera; Chung, Ho-Ryun; Jagannathan, Pras; James, Judith; Kim, Peter S.; Meyer, Nuala J.; Nadeau, Kari; Radic, Marko; Robinson, William H.; Singh, Upinder; Wang, Taia T.; Wherry, E. John; Skevaki, Chrysanthi; Prak, Eline T. Luning; Utz, Pj Share Save
Cellular and humoral immune responses following SARS-CoV-2 mRNA vaccination in patients with multiple sclerosis on anti-CD20 therapy Apostolidis, Sokratis A.; Kakara, Mihir; Painter, Mark M.; Goel, Rishi R.; Mathew, Divij; Lenzi, Kerry; Rezk, Ayman; Patterson, Kristina R.; Espinoza, Diego A.; Kadri, Jessy C.; Markowitz, Daniel M.; Markowitz, Clyde E.; Mexhitaj, Ina; Jacobs, Dina; Babb, Allison; Betts, Michael R.; Prak, Eline T. Luning; Weiskopf, Daniela; Grifoni, Alba; Lundgreen, Kendall A.; Gouma, Sigrid; Sette, Alessandro; Bates, Paul; Hensley, Scott E.; Greenplate, Allison R.; Wherry, E. John; Li, Rui; Bar-Or, Amit Share Save
Rapid induction of antigen-specific CD4+ T cells is associated with coordinated humoral and cellular immunity to SARS-CoV-2 mRNA vaccination Painter, Mark M.; Mathew, Divij; Goel, Rishi R.; Apostolidis, Sokratis A.; Pattekar, Ajinkya; Kuthuru, Oliva; Baxter, Amy E.; Herati, Ramin S.; Oldridge, Derek A.; Gouma, Sigrid; Hicks, Philip; Dysinger, Sarah; Lundgreen, Kendall A.; Kuri-Cervantes, Leticia; Adamski, Sharon; Hicks, Amanda; Korte, Scott; Giles, Josephine R.; Weirick, Madison E.; McAllister, Christopher M.; Dougherty, Jeanette; Long, Sherea; D'Andrea, Kurt; Hamilton, Jacob T.; Betts, Michael R.; Bates, Paul; Hensley, Scott E.; Grifoni, Alba; Weiskopf, Daniela; Sette, Alessandro; Greenplate, Allison R.; Wherry, E. John Share Save
Distinct antibody and memory B cell responses in SARS-CoV-2 naive and recovered individuals after mRNA vaccination Goel, Rishi R.; Apostolidis, Sokratis A.; Painter, Mark M.; Mathew, Divij; Pattekar, Ajinkya; Kuthuru, Oliva; Gouma, Sigrid; Hicks, Philip; Meng, Wenzhao; Rosenfeld, Aaron M.; Dysinger, Sarah; Lundgreen, Kendall A.; Kuri-Cervantes, Leticia; Adamski, Sharon; Hicks, Amanda; Korte, Scott; Oldridge, Derek A.; Baxter, Amy E.; Giles, Josephine R.; Weirick, Madison E.; McAllister, Christopher M.; Dougherty, Jeanette; Long, Sherea; D'Andrea, Kurt; Hamilton, Jacob T.; Betts, Michael R.; Prak, Eline T. Luning; Bates, Paul; Hensley, Scott E.; Greenplate, Allison R.; Wherry, E. John Share Save
Deep immune profiling of MIS-C demonstrates marked but transient immune activation compared to adult and pediatric COVID-19 Vella, Laura A.; Giles, Josephine R.; Baxter, Amy E.; Oldridge, Derek A.; Diorio, Caroline; Kuri-Cervantes, Leticia; Alanio, Cecile; Pampena, M. Betina; Wu, Jennifer E.; Chen, Zeyu; Huang, Yinghui Jane; Anderson, Elizabeth M.; Gouma, Sigrid; McNerney, Kevin O.; Chase, Julie; Burudpakdee, Chakkapong; Lee, Jessica H.; Apostolidis, Sokratis A.; Huang, Alexander C.; Mathew, Divij; Kuthuru, Oliva; Goodwin, Eileen C.; Weirick, Madison E.; Bolton, Marcus J.; Arevalo, Claudia P.; Ramos, Andre; Jasen, C. J.; Conrey, Peyton E.; Sayed, Samir; Giannini, Heather M.; D'Andrea, Kurt; Meyer, Nuala J.; Behrens, Edward M.; Bassiri, Hamid; Hensley, Scott E.; Henrickson, Sarah E.; Teachey, David T.; Betts, Michael R.; Wherry, E. John Share Save
Protein phosphatase 2A B55β limits CD8+ T cell lifespan following cytokine withdrawal Rodriguez-Rodriguez, Noe; Madera-Salcedo, Iris K.; Alejandro Cisneros-Segura, J.; Benjamin Garcia-Gonzalez, H.; Apostolidis, Sokratis A.; Saint-Martin, Abril; Esquivel-Velazquez, Marcela; Tran Nguyen; Romero-Rodriguez, Damaris P.; Tsokos, George C.; Alcocer-Varela, Jorge; Rosetti, Florencia; Crispin, Jose C. Share Save
Comprehensive mapping of immune perturbations associated with severe COVID-19 Kuri-Cervantes, Leticia; Pampena, Maria Betina; Meng, Wenzhao; Rosenfeld, Aaron M.; Ittner, Caroline A. G.; Weisman, Ariel R.; Agyekum, Roseline S.; Mathew, Divij; Baxter, Amy E.; Vella, Laura A.; Kuthuru, Oliva; Apostolidis, Sokratis A.; Bershaw, Luanne; Dougherty, Jeanette; Greenplate, Allison R.; Pattekar, Ajinkya; Kim, Justin; Han, Nicholas; Gouma, Sigrid; Weirick, Madison E.; Arevalo, Claudia P.; Bolton, Marcus J.; Goodwin, Eileen C.; Anderson, Elizabeth M.; Hensley, Scott E.; Jones, Tiffanie K.; Mangalmurti, Nilam S.; Prak, Eline T. Luning; Wherry, E. John; Meyer, Nuala J.; Betts, Michael R. Share Save
Serine/threonine phosphatase PP2A is essential for optima B cell function Meidan, Esra; Li, Hao; Pan, Wenliang; Kono, Michihito; Yu, Shuilian; Kyttaris, Vasileios C.; Ioannidis, Christina; Rodriguez Rodriguez, Noe; Crispin, Jose C.; Apostolidis, Sokratis A.; Lee, Pui; Manis, John; Sharabi, Amir; Tsokos, Maria G.; Tsokos, George C. Share Save
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